Wall clock time and date at job start Mon Mar 30 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47150 * 2 1 4 4 C 1.53007 * 109.47269 * 119.99621 * 2 1 3 5 5 C 1.52992 * 109.47321 * 185.00256 * 4 2 1 6 6 C 1.54264 * 110.03238 * 292.16654 * 5 4 2 7 7 C 1.54890 * 104.19795 * 217.10514 * 6 5 4 8 8 C 1.54891 * 102.74688 * 37.94141 * 7 6 5 9 9 C 1.53870 * 110.03342 * 175.00021 * 5 4 2 10 10 N 1.46499 * 109.47387 * 239.99642 * 2 1 3 11 11 S 1.65598 * 119.99790 * 94.99931 * 10 2 1 12 12 O 1.42099 * 106.40395 * 311.46262 * 11 10 2 13 13 O 1.42101 * 106.40367 * 178.54131 * 11 10 2 14 14 C 1.76199 * 107.21820 * 65.00132 * 11 10 2 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00013 * 179.72553 * 14 11 10 17 17 N 1.31515 * 119.99887 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99895 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47520 * 89.99933 * 18 16 14 20 20 H 1.48504 * 109.47004 * 209.99685 * 18 16 14 21 21 H 1.48494 * 109.47119 * 329.99385 * 18 16 14 22 22 H 1.09000 * 109.47216 * 60.00432 * 1 2 3 23 23 H 1.09003 * 109.47150 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47246 * 299.99926 * 1 2 3 25 25 H 1.09004 * 109.46599 * 305.00300 * 4 2 1 26 26 H 1.08998 * 109.46988 * 64.99803 * 4 2 1 27 27 H 1.09005 * 110.01858 * 53.60921 * 5 4 2 28 28 H 1.08998 * 110.48834 * 335.78887 * 6 5 4 29 29 H 1.09007 * 110.48702 * 98.42784 * 6 5 4 30 30 H 1.08998 * 110.75426 * 279.62851 * 7 6 5 31 31 H 1.09000 * 110.91485 * 156.33104 * 7 6 5 32 32 H 1.09001 * 110.48609 * 203.37727 * 8 7 6 33 33 H 1.09010 * 110.48304 * 80.73842 * 8 7 6 34 34 H 1.08998 * 110.03692 * 238.56731 * 9 5 4 35 35 H 1.09009 * 110.03242 * 359.95156 * 9 5 4 36 36 H 0.96994 * 120.00078 * 274.99882 * 10 2 1 37 37 H 0.97000 * 119.99443 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.2011 -1.4273 0.1684 7 6 5.4772 -2.0377 0.7995 8 6 5.0137 -2.3897 2.2349 9 6 4.0815 -1.2250 2.6277 10 7 2.0184 -0.6907 -1.1961 11 16 2.4122 0.1771 -2.5504 12 8 1.3247 1.0592 -2.7922 13 8 2.8777 -0.7636 -3.5084 14 6 3.7927 1.1909 -2.1371 15 1 4.2103 1.1551 -1.1418 16 6 4.3438 2.0256 -3.0862 17 7 3.8393 2.0646 -4.3001 18 14 5.8079 3.0999 -2.6481 19 1 7.0653 2.3610 -2.9274 20 1 5.7721 4.3413 -3.4623 21 1 5.7501 3.4516 -1.2066 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6053 -0.2616 2.1370 26 1 1.7516 -1.7714 1.2058 27 1 3.8682 0.4314 1.2437 28 1 3.5242 -2.2154 -0.1614 29 1 4.4623 -0.7743 -0.6645 30 1 6.2845 -1.3058 0.8228 31 1 5.7861 -2.9345 0.2625 32 1 5.8679 -2.4390 2.9102 33 1 4.4680 -3.3333 2.2389 34 1 4.6363 -0.4777 3.1949 35 1 3.2458 -1.5982 3.2199 36 1 2.1110 -1.6562 -1.1947 37 1 4.2273 2.6515 -4.9678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712553783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:46 Heat of formation + Delta-G solvation = -122.001417 kcal Electronic energy + Delta-G solvation = -19190.095620 eV Core-core repulsion = 16285.479948 eV Total energy + Delta-G solvation = -2904.615671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.61529 -35.66192 -34.99738 -33.87109 -33.05358 -30.52943 -28.97597 -28.21996 -26.10056 -24.72141 -20.79775 -20.44274 -19.48321 -18.90243 -17.26023 -16.22961 -15.93535 -15.03633 -14.84081 -14.70132 -13.99612 -13.48808 -13.27411 -13.06313 -12.91845 -12.60840 -11.99391 -11.83204 -11.70556 -11.32188 -11.20736 -10.91588 -10.81733 -10.65258 -10.62428 -10.52204 -10.31135 -10.22253 -10.16024 -10.10978 -10.09118 -9.85777 -9.21398 -8.89397 -8.37516 -6.66793 -5.27618 2.43247 3.07940 3.15262 3.21153 4.08822 4.67560 4.73654 4.89485 4.90937 4.94312 5.28325 5.49909 5.56074 5.72001 5.77798 5.85509 5.87454 5.92883 5.96847 5.97026 6.06515 6.09078 6.16611 6.21000 6.34579 6.38292 6.43303 6.53374 6.64794 6.74178 6.77304 6.88449 7.02225 7.37526 7.99067 8.06116 8.92879 10.27313 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.009436 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.792427 B = 2966.551394 C = 3821.769160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.157 3.843 3 H 0.087 0.913 4 C -0.114 4.114 5 C -0.092 4.092 6 C -0.124 4.124 7 C -0.129 4.129 8 C -0.124 4.124 9 C -0.120 4.120 10 N -1.130 6.130 11 S 2.714 3.286 12 O -1.009 7.009 13 O -1.010 7.010 14 C -1.018 5.018 15 H 0.105 0.895 16 C 0.134 3.866 17 N -0.846 5.846 18 Si 0.916 3.084 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.263 1.263 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.400 0.600 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -5.303 12.720 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.049 3.951 3 H 0.105 0.895 4 C -0.153 4.153 5 C -0.111 4.111 6 C -0.162 4.162 7 C -0.167 4.167 8 C -0.161 4.161 9 C -0.158 4.158 10 N -0.885 5.885 11 S 2.813 3.187 12 O -0.999 6.999 13 O -1.001 7.001 14 C -1.151 5.151 15 H 0.123 0.877 16 C -0.083 4.083 17 N -0.476 5.476 18 Si 0.740 3.260 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.187 1.187 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.232 0.768 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.282 -5.093 11.703 12.767 hybrid contribution 1.276 0.392 0.619 1.471 sum 0.994 -4.701 12.322 13.226 Atomic orbital electron populations 1.22333 0.96377 1.01662 1.02545 1.20556 0.93179 0.96552 0.84791 0.89526 1.22001 0.95221 1.00742 0.97355 1.21771 0.94697 1.00332 0.94256 1.22711 0.95553 0.99510 0.98424 1.22554 0.98496 1.00360 0.95303 1.22351 0.98572 0.98188 0.97015 1.22228 0.98676 0.97473 0.97406 1.56170 1.83557 1.18377 1.30419 1.00423 0.74993 0.72970 0.70298 1.93352 1.56741 1.66174 1.83633 1.93370 1.83021 1.64799 1.58892 1.30602 1.36610 1.40803 1.07122 0.87662 1.24716 0.96481 0.94075 0.93058 1.69905 1.39190 1.35150 1.03306 0.86229 0.81034 0.79131 0.79568 1.19273 1.20109 1.18654 0.90993 0.92999 0.92584 0.91518 0.91782 0.90722 0.91705 0.89433 0.91789 0.91984 0.92500 0.92105 0.92357 0.92172 0.76780 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.52 37.16 0.35 -2.24 16 2 C 0.16 2.60 2.77 -67.93 -0.19 2.41 16 3 H 0.09 1.55 7.85 -51.93 -0.41 1.14 16 4 C -0.11 -1.50 4.09 -26.73 -0.11 -1.61 16 5 C -0.09 -1.28 2.93 -89.51 -0.26 -1.55 16 6 C -0.12 -1.93 4.68 -25.07 -0.12 -2.05 16 7 C -0.13 -1.75 6.91 -24.74 -0.17 -1.92 16 8 C -0.12 -1.42 6.83 -25.07 -0.17 -1.59 16 9 C -0.12 -1.40 6.46 -25.62 -0.17 -1.57 16 10 N -1.13 -21.64 3.50 -4.89 -0.02 -21.66 16 11 S 2.71 70.58 4.80 -107.50 -0.52 70.07 16 12 O -1.01 -29.15 17.28 -57.17 -0.99 -30.14 16 13 O -1.01 -29.41 18.02 -57.17 -1.03 -30.44 16 14 C -1.02 -27.03 8.61 30.60 0.26 -26.77 16 15 H 0.11 2.52 6.77 -52.49 -0.36 2.17 16 16 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 17 N -0.85 -24.78 13.19 55.43 0.73 -24.05 16 18 Si 0.92 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 22 H 0.07 1.29 7.64 -51.93 -0.40 0.89 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.78 8.00 -51.93 -0.42 0.36 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.95 6.11 -51.93 -0.32 0.64 16 29 H 0.09 1.63 5.50 -51.93 -0.29 1.34 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.63 7.67 -51.92 -0.40 0.23 16 36 H 0.40 6.75 7.10 -34.47 -0.24 6.51 16 37 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 304.13 15.07 4.58 4.58 Total: -1.00 -33.34 304.13 -8.68 -42.02 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.76 Total: 7.53 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: -0.66 Total: -33.28 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.71 Total: -45.71 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -2.02 Total: -60.58 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 70.58 SS G_CDS: -0.52 Total: 70.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.34 -8.68 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712553783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.981 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds