Wall clock time and date at job start Mon Mar 30 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47150 * 2 1 4 4 C 1.53007 * 109.47269 * 119.99621 * 2 1 3 5 5 C 1.52992 * 109.47321 * 185.00256 * 4 2 1 6 6 C 1.54264 * 110.03238 * 292.16654 * 5 4 2 7 7 C 1.54890 * 104.19795 * 217.10514 * 6 5 4 8 8 C 1.54891 * 102.74688 * 37.94141 * 7 6 5 9 9 C 1.53870 * 110.03342 * 175.00021 * 5 4 2 10 10 N 1.46499 * 109.47387 * 239.99642 * 2 1 3 11 11 S 1.65598 * 119.99790 * 94.99931 * 10 2 1 12 12 O 1.42099 * 106.40395 * 311.46262 * 11 10 2 13 13 O 1.42101 * 106.40367 * 178.54131 * 11 10 2 14 14 C 1.76199 * 107.21820 * 65.00132 * 11 10 2 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00013 * 179.72553 * 14 11 10 17 17 N 1.31515 * 119.99887 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99895 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47520 * 89.99933 * 18 16 14 20 20 H 1.48504 * 109.47004 * 209.99685 * 18 16 14 21 21 H 1.48494 * 109.47119 * 329.99385 * 18 16 14 22 22 H 1.09000 * 109.47216 * 60.00432 * 1 2 3 23 23 H 1.09003 * 109.47150 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47246 * 299.99926 * 1 2 3 25 25 H 1.09004 * 109.46599 * 305.00300 * 4 2 1 26 26 H 1.08998 * 109.46988 * 64.99803 * 4 2 1 27 27 H 1.09005 * 110.01858 * 53.60921 * 5 4 2 28 28 H 1.08998 * 110.48834 * 335.78887 * 6 5 4 29 29 H 1.09007 * 110.48702 * 98.42784 * 6 5 4 30 30 H 1.08998 * 110.75426 * 279.62851 * 7 6 5 31 31 H 1.09000 * 110.91485 * 156.33104 * 7 6 5 32 32 H 1.09001 * 110.48609 * 203.37727 * 8 7 6 33 33 H 1.09010 * 110.48304 * 80.73842 * 8 7 6 34 34 H 1.08998 * 110.03692 * 238.56731 * 9 5 4 35 35 H 1.09009 * 110.03242 * 359.95156 * 9 5 4 36 36 H 0.96994 * 120.00078 * 274.99882 * 10 2 1 37 37 H 0.97000 * 119.99443 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.2011 -1.4273 0.1684 7 6 5.4772 -2.0377 0.7995 8 6 5.0137 -2.3897 2.2349 9 6 4.0815 -1.2250 2.6277 10 7 2.0184 -0.6907 -1.1961 11 16 2.4122 0.1771 -2.5504 12 8 1.3247 1.0592 -2.7922 13 8 2.8777 -0.7636 -3.5084 14 6 3.7927 1.1909 -2.1371 15 1 4.2103 1.1551 -1.1418 16 6 4.3438 2.0256 -3.0862 17 7 3.8393 2.0646 -4.3001 18 14 5.8079 3.0999 -2.6481 19 1 7.0653 2.3610 -2.9274 20 1 5.7721 4.3413 -3.4623 21 1 5.7501 3.4516 -1.2066 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6053 -0.2616 2.1370 26 1 1.7516 -1.7714 1.2058 27 1 3.8682 0.4314 1.2437 28 1 3.5242 -2.2154 -0.1614 29 1 4.4623 -0.7743 -0.6645 30 1 6.2845 -1.3058 0.8228 31 1 5.7861 -2.9345 0.2625 32 1 5.8679 -2.4390 2.9102 33 1 4.4680 -3.3333 2.2389 34 1 4.6363 -0.4777 3.1949 35 1 3.2458 -1.5982 3.2199 36 1 2.1110 -1.6562 -1.1947 37 1 4.2273 2.6515 -4.9678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712553783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:46 Heat of formation + Delta-G solvation = -146.168735 kcal Electronic energy + Delta-G solvation = -19191.143593 eV Core-core repulsion = 16285.479948 eV Total energy + Delta-G solvation = -2905.663645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74585 -37.42085 -36.72974 -36.07047 -35.14399 -31.84683 -30.19329 -29.31051 -28.19767 -25.81699 -22.14518 -21.53538 -21.04620 -20.38212 -19.14021 -18.21565 -17.31124 -16.90805 -16.12158 -15.94350 -15.84894 -15.41095 -14.48184 -14.32862 -14.06980 -13.99629 -13.83849 -13.31838 -13.08212 -13.01522 -12.77361 -12.46373 -12.37994 -12.32006 -12.21171 -12.00904 -11.84333 -11.70594 -11.39841 -11.33777 -11.32365 -11.21540 -11.09878 -10.83750 -9.99796 -8.72339 -7.42228 0.44721 1.33455 1.33856 1.49188 2.21450 2.61198 3.07401 3.74878 3.77306 3.88449 3.91397 4.18862 4.35943 4.42114 4.55201 4.65093 4.70343 4.78093 4.80758 4.87660 4.91334 4.97062 5.05418 5.10924 5.19589 5.21617 5.27706 5.31107 5.38079 5.47960 5.54427 5.57282 5.64760 5.72879 5.98353 6.52292 6.82903 8.23987 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.009436 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.792427 B = 2966.551394 C = 3821.769160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.147 3.853 3 H 0.067 0.933 4 C -0.104 4.104 5 C -0.095 4.095 6 C -0.134 4.134 7 C -0.133 4.133 8 C -0.117 4.117 9 C -0.114 4.114 10 N -1.112 6.112 11 S 2.717 3.283 12 O -1.047 7.047 13 O -1.051 7.051 14 C -1.027 5.027 15 H 0.124 0.876 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.984 3.016 19 H -0.257 1.257 20 H -0.266 1.266 21 H -0.246 1.246 22 H 0.036 0.964 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -5.729 15.834 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.142 4.142 5 C -0.113 4.113 6 C -0.171 4.171 7 C -0.171 4.171 8 C -0.155 4.155 9 C -0.152 4.152 10 N -0.872 5.872 11 S 2.818 3.182 12 O -1.036 7.036 13 O -1.042 7.042 14 C -1.161 5.161 15 H 0.142 0.858 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.802 3.198 19 H -0.181 1.181 20 H -0.190 1.190 21 H -0.169 1.169 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.248 0.752 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.310 -5.541 14.824 15.829 hybrid contribution 1.035 0.470 -0.325 1.182 sum 1.345 -5.071 14.499 15.419 Atomic orbital electron populations 1.22314 0.95157 1.02896 1.02386 1.20884 0.94220 0.95934 0.85003 0.91475 1.21967 0.94562 1.01531 0.96163 1.21783 0.95272 0.99256 0.95036 1.22725 0.97019 0.99320 0.98079 1.22572 0.97372 1.00146 0.96964 1.22332 0.99181 0.98581 0.95394 1.22189 0.99413 0.97501 0.96050 1.55540 1.83366 1.18647 1.29671 0.99921 0.74586 0.72637 0.71051 1.93299 1.57904 1.67503 1.84934 1.93301 1.83531 1.65634 1.61692 1.30882 1.36596 1.40600 1.08002 0.85838 1.25946 0.99772 0.95611 0.92751 1.70009 1.41360 1.36729 1.04798 0.85217 0.76951 0.77345 0.80246 1.18149 1.19005 1.16898 0.94520 0.91075 0.89393 0.88514 0.89993 0.92446 0.91354 0.93246 0.92491 0.91785 0.91076 0.91022 0.91780 0.90106 0.75249 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.87 9.52 71.98 0.69 -4.18 16 2 C 0.15 4.67 2.77 44.99 0.12 4.80 16 3 H 0.07 2.40 7.85 -2.39 -0.02 2.38 16 4 C -0.10 -2.38 4.09 30.59 0.13 -2.25 16 5 C -0.09 -2.43 2.93 -10.07 -0.03 -2.46 16 6 C -0.13 -4.02 4.68 31.67 0.15 -3.87 16 7 C -0.13 -3.39 6.91 31.89 0.22 -3.17 16 8 C -0.12 -2.30 6.83 31.67 0.22 -2.08 16 9 C -0.11 -2.23 6.46 31.32 0.20 -2.03 16 10 N -1.11 -42.79 3.50 -169.38 -0.59 -43.38 16 11 S 2.72 146.26 4.80 -56.49 -0.27 145.99 16 12 O -1.05 -62.99 17.28 -128.00 -2.21 -65.20 16 13 O -1.05 -63.73 18.02 -128.00 -2.31 -66.04 16 14 C -1.03 -55.68 8.61 67.73 0.58 -55.10 16 15 H 0.12 6.00 6.77 -2.91 -0.02 5.98 16 16 C 0.07 3.99 5.46 84.66 0.46 4.45 16 17 N -0.90 -54.17 13.19 21.45 0.28 -53.88 16 18 Si 0.98 41.57 29.54 68.60 2.03 43.59 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 21 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 22 H 0.04 1.31 7.64 -2.39 -0.02 1.29 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 25 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 27 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.07 1.94 6.11 -2.39 -0.01 1.92 16 29 H 0.05 1.86 5.50 -2.38 -0.01 1.84 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.28 7.67 -2.38 -0.02 1.26 16 36 H 0.41 13.82 7.10 -96.75 -0.69 13.13 16 37 H 0.30 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -74.87 304.13 0.03 -74.84 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.37 Total: 29.97 kcal Atomic # 6 Polarization: -68.63 SS G_CDS: 2.74 Total: -65.89 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -0.31 Total: -97.26 kcal Atomic # 8 Polarization: -126.72 SS G_CDS: -4.52 Total: -131.24 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 146.26 SS G_CDS: -0.27 Total: 145.99 kcal Total: -74.87 0.03 -74.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712553783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.327 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds