Wall clock time and date at job start Mon Mar 30 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47334 * 2 1 4 4 H 1.09005 * 109.46908 * 54.38336 * 3 2 1 5 5 C 1.50700 * 109.47235 * 174.37636 * 3 2 1 6 6 H 1.08004 * 119.99793 * 120.00180 * 5 3 2 7 7 C 1.37871 * 120.00417 * 300.00479 * 5 3 2 8 8 N 1.31513 * 119.99796 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00309 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47239 * 59.99487 * 9 7 5 11 11 H 1.48492 * 109.47258 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46752 * 299.99882 * 9 7 5 13 13 N 1.46893 * 109.47359 * 294.38267 * 3 2 1 14 14 C 1.46897 * 111.00530 * 155.80322 * 13 3 2 15 15 C 1.53787 * 113.61424 * 253.83974 * 14 13 3 16 16 C 1.53778 * 87.07827 * 220.01254 * 15 14 13 17 17 S 1.81405 * 113.61504 * 139.98005 * 16 15 14 18 18 C 1.81398 * 101.92109 * 82.49897 * 17 16 15 19 19 O 1.42092 * 108.58177 * 196.98917 * 17 16 15 20 20 O 1.42109 * 108.57370 * 328.01761 * 17 16 15 21 21 C 1.53777 * 113.61958 * 156.33739 * 14 13 3 22 22 H 1.08998 * 109.47082 * 305.79045 * 1 2 3 23 23 H 1.09003 * 109.47282 * 65.78829 * 1 2 3 24 24 H 1.08998 * 109.47289 * 185.78898 * 1 2 3 25 25 H 1.09003 * 109.47284 * 240.00214 * 2 1 3 26 26 H 1.09001 * 109.47212 * 120.00127 * 2 1 3 27 27 H 0.96999 * 120.00317 * 180.02562 * 8 7 5 28 28 H 1.00903 * 111.00493 * 31.84536 * 13 3 2 29 29 H 1.09006 * 112.84936 * 25.13802 * 14 13 3 30 30 H 1.08994 * 113.61187 * 334.55953 * 15 14 13 31 31 H 1.08998 * 113.61339 * 105.46868 * 15 14 13 32 32 H 1.09001 * 113.61718 * 270.88057 * 16 15 14 33 33 H 1.09006 * 109.47066 * 60.00197 * 18 17 16 34 34 H 1.09001 * 109.47180 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47294 * 300.00664 * 18 17 16 36 36 H 1.08995 * 113.61634 * 254.52868 * 21 14 13 37 37 H 1.08995 * 113.61165 * 25.43607 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9845 0.8355 5 6 3.5406 1.4447 0.1392 6 1 4.1538 1.8865 -0.6323 7 6 4.1306 0.8828 1.2514 8 7 3.3839 0.3452 2.1911 9 14 5.9906 0.8863 1.4243 10 1 6.4851 2.2864 1.4246 11 1 6.3705 0.2262 2.6991 12 1 6.5948 0.1482 0.2861 13 7 1.6642 2.0948 -1.2614 14 6 1.6023 3.5537 -1.1017 15 6 0.1688 4.1098 -1.0706 16 6 0.6879 5.2788 -1.9243 17 16 -0.4642 5.7949 -3.2270 18 6 -1.5970 6.8807 -2.3168 19 8 0.2470 6.5767 -4.1768 20 8 -1.1877 4.6546 -3.6693 21 6 1.7895 4.3261 -2.4182 22 1 -0.3633 0.6010 0.8336 23 1 -0.3634 0.4215 -0.9373 24 1 -0.3634 -1.0224 0.1037 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.7989 -0.0498 2.9737 28 1 0.7896 1.7317 -1.6097 29 1 2.2309 3.9176 -0.2888 30 1 -0.5551 3.4796 -1.5872 31 1 -0.1621 4.4087 -0.0760 32 1 1.0654 6.1152 -1.3360 33 1 -1.0372 7.7115 -1.8871 34 1 -2.3557 7.2668 -2.9975 35 1 -2.0788 6.3160 -1.5187 36 1 2.7667 4.7997 -2.5114 37 1 1.5084 3.7552 -3.3030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716060822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:46 Heat of formation + Delta-G solvation = -52.220404 kcal Electronic energy + Delta-G solvation = -18310.076623 eV Core-core repulsion = 15408.486884 eV Total energy + Delta-G solvation = -2901.589739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.90722 -36.96696 -36.02666 -35.39092 -31.99550 -30.38289 -29.72222 -26.65651 -25.59514 -24.36090 -22.60063 -19.87353 -19.38981 -18.73054 -17.02299 -16.27867 -16.08712 -15.93380 -15.37964 -14.69212 -14.17916 -13.78730 -13.46928 -13.35274 -12.83601 -12.66984 -12.58716 -12.43578 -12.11124 -11.97489 -11.74657 -11.63838 -11.29190 -11.09049 -10.95605 -10.86291 -10.66936 -10.53636 -10.09310 -9.97813 -9.68267 -9.40733 -9.08531 -8.37299 -7.28218 -5.99091 -4.03651 -0.02793 2.69362 3.32432 3.37012 3.40594 3.54746 3.84408 4.32300 4.42599 4.51717 4.62136 4.83123 4.92838 5.05647 5.28080 5.44396 5.51334 5.70342 5.79947 5.85188 6.12558 6.15321 6.16903 6.21903 6.41318 6.57481 6.84158 7.05953 7.15275 7.47665 7.76058 7.89880 8.25674 8.36719 8.71940 9.04475 9.61719 11.06034 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.005032 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.534006 B = 5563.351496 C = 6103.921193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.677 5.677 14 C 0.099 3.901 15 C -0.149 4.149 16 C -0.596 4.596 17 S 2.420 3.580 18 C -0.658 4.658 19 O -0.947 6.947 20 O -0.938 6.938 21 C -0.100 4.100 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.099 0.901 27 H 0.260 0.740 28 H 0.324 0.676 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 10.539 -4.951 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.307 5.307 14 C -0.014 4.014 15 C -0.190 4.190 16 C -0.707 4.707 17 S 2.604 3.396 18 C -0.807 4.807 19 O -0.944 6.944 20 O -0.935 6.935 21 C -0.139 4.139 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.103 0.897 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.445 10.213 -5.918 14.513 hybrid contribution 0.087 0.506 1.569 1.651 sum -8.359 10.719 -4.349 14.271 Atomic orbital electron populations 1.21890 0.99554 0.99810 0.99592 1.21775 0.91284 1.00337 1.03152 1.19199 0.95448 0.90069 0.84185 0.97877 1.21195 0.91278 1.36723 1.04256 0.92066 1.24952 0.98071 0.95588 0.95857 1.69859 1.34788 1.39408 1.09555 0.86609 0.85784 0.78111 0.77149 1.20479 1.21493 1.20286 1.60548 1.35560 1.01420 1.33129 1.22758 0.92624 0.89890 0.96118 1.23661 1.01471 0.94586 0.99282 1.31513 1.14815 1.07517 1.16870 1.07852 0.77549 0.76269 0.77949 1.30265 1.17520 1.17052 1.15823 1.93567 1.72368 1.71085 1.57369 1.93589 1.71826 1.49084 1.79020 1.22866 0.96180 0.94511 1.00378 0.93889 0.94482 0.94358 0.93974 0.88234 0.93021 0.85692 0.87513 0.88173 0.90208 0.83470 0.85579 0.85771 0.85349 0.89712 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.64 37.15 0.36 -2.48 16 2 C -0.13 -2.91 5.37 -26.73 -0.14 -3.05 16 3 C 0.22 5.18 1.89 -68.87 -0.13 5.05 16 4 H 0.00 0.09 7.87 -51.93 -0.41 -0.32 16 5 C -0.50 -13.23 8.61 -34.44 -0.30 -13.52 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -13.61 6.41 -100.10 -0.64 -14.25 16 14 C 0.10 1.68 3.89 -66.90 -0.26 1.42 16 15 C -0.15 -1.95 7.24 -25.92 -0.19 -2.14 16 16 C -0.60 -6.62 4.17 -25.92 -0.11 -6.73 16 17 S 2.42 26.34 5.34 -107.50 -0.57 25.76 16 18 C -0.66 -4.50 10.62 101.05 1.07 -3.43 16 19 O -0.95 -13.54 18.10 -57.83 -1.05 -14.59 16 20 O -0.94 -13.51 17.19 -57.83 -0.99 -14.50 16 21 C -0.10 -1.44 7.47 -25.92 -0.19 -1.64 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.62 6.66 -51.93 -0.35 0.28 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.10 2.57 5.94 -51.93 -0.31 2.27 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.32 6.01 6.08 -39.29 -0.24 5.77 16 29 H 0.11 1.98 7.80 -51.93 -0.41 1.57 16 30 H 0.10 1.31 7.04 -51.93 -0.37 0.94 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.15 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.12 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -32.67 312.25 -8.77 -41.44 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.84 Total: 4.70 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 0.02 Total: -25.11 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.02 Total: -38.48 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -2.04 Total: -29.09 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 26.34 SS G_CDS: -0.57 Total: 25.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.67 -8.77 -41.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716060822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.783 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds