Wall clock time and date at job start Mon Mar 30 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47334 * 2 1 4 4 H 1.09005 * 109.46908 * 54.38336 * 3 2 1 5 5 C 1.50700 * 109.47235 * 174.37636 * 3 2 1 6 6 H 1.08004 * 119.99793 * 120.00180 * 5 3 2 7 7 C 1.37871 * 120.00417 * 300.00479 * 5 3 2 8 8 N 1.31513 * 119.99796 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00309 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47239 * 59.99487 * 9 7 5 11 11 H 1.48492 * 109.47258 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46752 * 299.99882 * 9 7 5 13 13 N 1.46893 * 109.47359 * 294.38267 * 3 2 1 14 14 C 1.46897 * 111.00530 * 155.80322 * 13 3 2 15 15 C 1.53787 * 113.61424 * 253.83974 * 14 13 3 16 16 C 1.53778 * 87.07827 * 220.01254 * 15 14 13 17 17 S 1.81405 * 113.61504 * 139.98005 * 16 15 14 18 18 C 1.81398 * 101.92109 * 82.49897 * 17 16 15 19 19 O 1.42092 * 108.58177 * 196.98917 * 17 16 15 20 20 O 1.42109 * 108.57370 * 328.01761 * 17 16 15 21 21 C 1.53777 * 113.61958 * 156.33739 * 14 13 3 22 22 H 1.08998 * 109.47082 * 305.79045 * 1 2 3 23 23 H 1.09003 * 109.47282 * 65.78829 * 1 2 3 24 24 H 1.08998 * 109.47289 * 185.78898 * 1 2 3 25 25 H 1.09003 * 109.47284 * 240.00214 * 2 1 3 26 26 H 1.09001 * 109.47212 * 120.00127 * 2 1 3 27 27 H 0.96999 * 120.00317 * 180.02562 * 8 7 5 28 28 H 1.00903 * 111.00493 * 31.84536 * 13 3 2 29 29 H 1.09006 * 112.84936 * 25.13802 * 14 13 3 30 30 H 1.08994 * 113.61187 * 334.55953 * 15 14 13 31 31 H 1.08998 * 113.61339 * 105.46868 * 15 14 13 32 32 H 1.09001 * 113.61718 * 270.88057 * 16 15 14 33 33 H 1.09006 * 109.47066 * 60.00197 * 18 17 16 34 34 H 1.09001 * 109.47180 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47294 * 300.00664 * 18 17 16 36 36 H 1.08995 * 113.61634 * 254.52868 * 21 14 13 37 37 H 1.08995 * 113.61165 * 25.43607 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9845 0.8355 5 6 3.5406 1.4447 0.1392 6 1 4.1538 1.8865 -0.6323 7 6 4.1306 0.8828 1.2514 8 7 3.3839 0.3452 2.1911 9 14 5.9906 0.8863 1.4243 10 1 6.4851 2.2864 1.4246 11 1 6.3705 0.2262 2.6991 12 1 6.5948 0.1482 0.2861 13 7 1.6642 2.0948 -1.2614 14 6 1.6023 3.5537 -1.1017 15 6 0.1688 4.1098 -1.0706 16 6 0.6879 5.2788 -1.9243 17 16 -0.4642 5.7949 -3.2270 18 6 -1.5970 6.8807 -2.3168 19 8 0.2470 6.5767 -4.1768 20 8 -1.1877 4.6546 -3.6693 21 6 1.7895 4.3261 -2.4182 22 1 -0.3633 0.6010 0.8336 23 1 -0.3634 0.4215 -0.9373 24 1 -0.3634 -1.0224 0.1037 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.7989 -0.0498 2.9737 28 1 0.7896 1.7317 -1.6097 29 1 2.2309 3.9176 -0.2888 30 1 -0.5551 3.4796 -1.5872 31 1 -0.1621 4.4087 -0.0760 32 1 1.0654 6.1152 -1.3360 33 1 -1.0372 7.7115 -1.8871 34 1 -2.3557 7.2668 -2.9975 35 1 -2.0788 6.3160 -1.5187 36 1 2.7667 4.7997 -2.5114 37 1 1.5084 3.7552 -3.3030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716060822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:46 Heat of formation + Delta-G solvation = -77.107285 kcal Electronic energy + Delta-G solvation = -18311.155799 eV Core-core repulsion = 15408.486884 eV Total energy + Delta-G solvation = -2902.668916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14417 -37.95409 -37.12396 -36.97150 -33.97037 -31.92857 -30.33809 -28.50431 -26.69423 -25.75269 -24.29106 -21.55154 -20.73163 -19.65348 -18.35261 -17.96381 -17.05111 -16.89528 -16.78705 -16.28517 -15.61758 -15.41407 -14.65182 -14.13785 -14.05177 -13.88900 -13.86131 -13.53251 -13.29439 -13.21166 -13.09107 -12.99009 -12.83724 -12.64642 -12.52954 -12.36551 -11.93849 -11.89744 -11.77221 -11.49113 -11.43513 -11.00813 -10.70656 -10.41155 -8.92253 -8.04738 -6.16635 -0.86035 1.42409 1.44103 1.51431 1.89560 2.45057 2.67075 2.96393 3.20237 3.42703 3.52238 3.67597 3.91042 4.14600 4.16339 4.29493 4.52946 4.60192 4.61952 4.67430 4.73806 4.79347 4.98069 5.00599 5.01082 5.16594 5.24708 5.30877 5.40408 5.64099 5.78414 5.93040 6.39944 6.56504 6.97781 7.03466 7.52694 8.97664 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.005032 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.534006 B = 5563.351496 C = 6103.921193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.226 3.774 4 H -0.022 1.022 5 C -0.513 4.513 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.685 5.685 14 C 0.077 3.923 15 C -0.140 4.140 16 C -0.580 4.580 17 S 2.427 3.573 18 C -0.633 4.633 19 O -0.986 6.986 20 O -0.980 6.980 21 C -0.109 4.109 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.181 0.819 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.085 0.915 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.350 12.276 -4.779 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.118 3.882 4 H -0.004 1.004 5 C -0.551 4.551 6 H 0.066 0.934 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.316 5.316 14 C -0.035 4.035 15 C -0.180 4.180 16 C -0.690 4.690 17 S 2.614 3.386 18 C -0.786 4.786 19 O -0.984 6.984 20 O -0.977 6.977 21 C -0.149 4.149 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.198 0.802 33 H 0.173 0.827 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.104 0.896 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.683 11.931 -5.778 16.416 hybrid contribution 0.449 0.025 1.524 1.589 sum -9.234 11.956 -4.255 15.694 Atomic orbital electron populations 1.21753 0.96179 1.01127 1.00652 1.21620 0.94348 0.99273 1.01036 1.18932 0.93806 0.90551 0.84890 1.00446 1.21469 0.93016 1.36630 1.04029 0.93406 1.25624 1.01949 0.95370 0.95665 1.69982 1.36160 1.39883 1.09821 0.85706 0.81163 0.78208 0.77054 1.19914 1.20981 1.20256 1.60443 1.36378 1.03457 1.31288 1.22858 0.95559 0.88107 0.96980 1.23524 0.98674 0.94922 1.00876 1.31462 1.13379 1.07492 1.16624 1.07370 0.77494 0.75965 0.77739 1.30042 1.16288 1.16449 1.15853 1.93521 1.73906 1.71507 1.59420 1.93536 1.72313 1.51572 1.80275 1.22833 0.97912 0.95277 0.98828 0.93963 0.92443 0.92679 0.94915 0.91380 0.93101 0.84866 0.89724 0.88096 0.88198 0.80170 0.82708 0.84201 0.83142 0.89613 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.64 71.98 0.69 -4.44 16 2 C -0.12 -5.80 5.37 30.59 0.16 -5.63 16 3 C 0.23 11.03 1.89 44.17 0.08 11.11 16 4 H -0.02 -1.16 7.87 -2.38 -0.02 -1.18 16 5 C -0.51 -28.13 8.61 25.60 0.22 -27.90 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.01 0.67 5.29 84.65 0.45 1.12 16 8 N -0.92 -51.97 11.29 21.44 0.24 -51.73 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.68 -28.01 6.41 -470.62 -3.01 -31.02 16 14 C 0.08 2.62 3.89 45.44 0.18 2.80 16 15 C -0.14 -3.40 7.24 31.12 0.23 -3.18 16 16 C -0.58 -11.62 4.17 31.12 0.13 -11.49 16 17 S 2.43 47.61 5.34 -56.49 -0.30 47.31 16 18 C -0.63 -5.56 10.62 113.37 1.20 -4.35 16 19 O -0.99 -26.96 18.10 -127.37 -2.30 -29.26 16 20 O -0.98 -27.09 17.19 -127.37 -2.19 -29.28 16 21 C -0.11 -3.14 7.47 31.12 0.23 -2.90 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.06 1.86 6.66 -2.39 -0.02 1.84 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 3.62 5.94 -2.39 -0.01 3.60 16 27 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.33 12.30 6.08 -89.69 -0.55 11.76 16 29 H 0.08 3.22 7.80 -2.38 -0.02 3.21 16 30 H 0.10 2.47 7.04 -2.39 -0.02 2.45 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.18 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.08 2.52 8.10 -2.39 -0.02 2.50 16 Total: -1.00 -73.06 312.25 -1.46 -74.53 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.50 Total: 18.48 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.58 Total: -44.86 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.77 Total: -82.75 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -4.49 Total: -58.54 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 47.61 SS G_CDS: -0.30 Total: 47.31 kcal Total: -73.06 -1.46 -74.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716060822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.582 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds