Wall clock time and date at job start Mon Mar 30 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 108.44523 * 2 1 4 4 C 1.47091 * 108.38992 * 117.62259 * 2 1 3 5 5 C 1.54864 * 110.32009 * 183.96967 * 4 2 1 6 6 N 1.44583 * 109.59965 * 288.73234 * 5 4 2 7 7 S 1.65603 * 118.64399 * 270.72447 * 6 5 4 8 8 O 1.42097 * 106.40354 * 203.53873 * 7 6 5 9 9 O 1.42100 * 106.40139 * 336.46300 * 7 6 5 10 10 C 1.76200 * 107.21479 * 90.00224 * 7 6 5 11 11 H 1.08001 * 120.00431 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99905 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00251 * 179.97438 * 12 10 7 14 14 Si 1.86801 * 119.99897 * 359.97438 * 12 10 7 15 15 H 1.48503 * 109.47206 * 90.00203 * 14 12 10 16 16 H 1.48500 * 109.47089 * 210.00406 * 14 12 10 17 17 H 1.48502 * 109.47194 * 330.00189 * 14 12 10 18 18 C 1.47603 * 122.71450 * 90.74940 * 6 5 4 19 19 C 1.53985 * 112.12327 * 317.83592 * 18 6 5 20 20 H 1.09001 * 109.34979 * 79.64991 * 19 18 6 21 21 C 1.52993 * 109.36468 * 199.25870 * 19 18 6 22 22 C 1.50880 * 110.10667 * 319.46147 * 19 18 6 23 23 H 1.09001 * 109.47094 * 177.68946 * 1 2 3 24 24 H 1.09000 * 109.47027 * 297.69023 * 1 2 3 25 25 H 1.09003 * 109.47450 * 57.69196 * 1 2 3 26 26 H 1.08996 * 109.33093 * 304.22845 * 4 2 1 27 27 H 1.08998 * 109.33056 * 63.70902 * 4 2 1 28 28 H 1.09000 * 109.45464 * 48.76877 * 5 4 2 29 29 H 1.09000 * 109.45210 * 168.69506 * 5 4 2 30 30 H 0.96992 * 120.00197 * 179.97438 * 13 12 10 31 31 H 1.09003 * 108.94795 * 78.52964 * 18 6 5 32 32 H 1.09002 * 108.94846 * 197.16104 * 18 6 5 33 33 H 1.09005 * 109.47033 * 180.65120 * 21 19 18 34 34 H 1.08996 * 109.47932 * 300.65030 * 21 19 18 35 35 H 1.09006 * 109.47308 * 60.65464 * 21 19 18 36 36 H 1.09005 * 109.48811 * 331.90799 * 22 19 18 37 37 H 1.09002 * 109.48712 * 211.84429 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8749 1.0340 0.0000 4 6 1.9941 -0.6472 1.2367 5 6 3.5385 -0.5828 1.3305 6 7 4.1213 -1.4777 0.3559 7 16 4.4099 -3.0486 0.7934 8 8 5.4329 -3.5243 -0.0705 9 8 4.5228 -3.0564 2.2099 10 6 2.9610 -3.9728 0.4046 11 1 2.1078 -3.4792 -0.0368 12 6 2.9159 -5.3261 0.6648 13 7 1.8343 -6.0158 0.3752 14 14 4.3913 -6.1798 1.4289 15 1 4.2727 -6.1435 2.9087 16 1 4.4385 -7.5915 0.9705 17 1 5.6357 -5.4831 1.0148 18 6 4.4702 -1.0489 -1.0127 19 6 3.3853 -0.1493 -1.6328 20 1 3.4945 0.8651 -1.2492 21 6 3.5476 -0.1339 -3.1540 22 6 2.0144 -0.6723 -1.2810 23 1 -0.3633 -1.0268 -0.0414 24 1 -0.3633 0.4775 0.9100 25 1 -0.3634 0.5493 -0.8686 26 1 1.5589 -0.1371 2.0960 27 1 1.6756 -1.6896 1.2399 28 1 3.8721 0.4359 1.1328 29 1 3.8541 -0.8800 2.3306 30 1 1.8028 -6.9679 0.5579 31 1 5.4112 -0.4995 -0.9824 32 1 4.5980 -1.9321 -1.6386 33 1 2.7874 0.5118 -3.5940 34 1 4.5374 0.2437 -3.4102 35 1 3.4333 -1.1461 -3.5419 36 1 2.0644 -1.7506 -1.1295 37 1 1.3214 -0.4505 -2.0926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723807776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:26 Heat of formation + Delta-G solvation = -98.489485 kcal Electronic energy + Delta-G solvation = -19605.961161 eV Core-core repulsion = 16702.365043 eV Total energy + Delta-G solvation = -2903.596117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.89640 -35.73881 -34.42148 -34.18805 -33.68261 -32.97450 -28.43924 -26.51087 -26.27580 -25.30700 -22.83157 -20.07546 -19.61269 -18.31867 -17.42932 -16.62404 -15.89233 -15.23855 -14.89752 -14.33300 -13.95627 -13.56819 -13.29092 -12.88921 -12.86615 -12.77772 -12.48882 -12.22029 -11.94134 -11.50761 -11.45230 -11.32717 -11.23458 -10.92615 -10.82273 -10.54179 -10.47976 -10.15162 -10.09414 -10.05670 -9.92837 -9.68554 -9.17853 -9.03760 -8.13465 -6.77478 -5.29921 2.07734 3.08434 3.19052 3.28738 3.97438 4.19449 4.61769 4.89398 5.03411 5.12817 5.30900 5.39412 5.42493 5.56029 5.60397 5.78243 5.83614 5.91900 5.96505 5.99514 6.07889 6.12475 6.14097 6.23863 6.25246 6.26771 6.32726 6.51264 6.60716 6.67159 6.75633 6.81922 6.93423 7.51393 7.54842 8.26972 8.74472 10.34445 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.009162 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.828136 B = 3055.318018 C = 3285.809762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.057 0.943 4 C -0.146 4.146 5 C 0.124 3.876 6 N -0.994 5.994 7 S 2.669 3.331 8 O -1.010 7.010 9 O -1.011 7.011 10 C -1.012 5.012 11 H 0.125 0.875 12 C 0.155 3.845 13 N -0.824 5.824 14 Si 0.798 3.202 15 H -0.247 1.247 16 H -0.256 1.256 17 H -0.220 1.220 18 C 0.132 3.868 19 C -0.099 4.099 20 H 0.068 0.932 21 C -0.146 4.146 22 C -0.114 4.114 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.279 0.721 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 11.785 -2.936 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.186 4.186 5 C -0.003 4.003 6 N -0.829 5.829 7 S 2.772 3.228 8 O -1.000 7.000 9 O -1.001 7.001 10 C -1.146 5.146 11 H 0.142 0.858 12 C -0.065 4.065 13 N -0.453 5.453 14 Si 0.618 3.382 15 H -0.171 1.171 16 H -0.180 1.180 17 H -0.143 1.143 18 C 0.006 3.994 19 C -0.119 4.119 20 H 0.086 0.914 21 C -0.204 4.204 22 C -0.151 4.151 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.498 11.371 -2.563 11.667 hybrid contribution -0.314 -0.590 0.051 0.670 sum 0.184 10.781 -2.511 11.072 Atomic orbital electron populations 1.21988 0.95982 1.02037 1.00730 1.19957 0.95288 0.99226 0.95398 0.92441 1.21470 0.96609 1.03325 0.97155 1.21165 0.92337 0.94291 0.92482 1.57055 1.78311 1.28899 1.18628 1.01594 0.76303 0.71670 0.73223 1.93449 1.59776 1.78848 1.67920 1.93384 1.88839 1.85714 1.32149 1.30580 1.21958 1.05366 1.56708 0.85766 1.24412 0.95618 0.96114 0.90318 1.69989 1.26897 1.09076 1.39316 0.87920 0.84803 0.83055 0.82407 1.17096 1.17985 1.14258 1.21587 0.96019 0.99583 0.82197 1.21307 0.95842 0.99314 0.95456 0.91369 1.21863 1.01265 1.02244 0.95016 1.21300 0.95025 1.02500 0.96309 0.92346 0.93214 0.93359 0.91522 0.89904 0.91464 0.89453 0.91019 0.92789 0.89544 0.92697 0.92810 0.92135 0.90037 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.88 37.16 0.33 -1.63 16 2 C -0.08 -1.14 2.16 -93.68 -0.20 -1.34 16 3 H 0.06 0.73 7.36 -51.93 -0.38 0.34 16 4 C -0.15 -2.35 4.91 -28.58 -0.14 -2.49 16 5 C 0.12 2.09 5.61 -4.08 -0.02 2.07 16 6 N -0.99 -19.47 2.53 -113.28 -0.29 -19.76 16 7 S 2.67 67.15 4.08 -107.50 -0.44 66.71 16 8 O -1.01 -27.23 14.71 -57.17 -0.84 -28.07 16 9 O -1.01 -27.05 15.28 -57.17 -0.87 -27.93 16 10 C -1.01 -27.74 9.77 30.60 0.30 -27.44 16 11 H 0.12 3.40 6.24 -52.49 -0.33 3.08 16 12 C 0.15 4.41 5.47 -17.82 -0.10 4.31 16 13 N -0.82 -23.58 13.96 55.43 0.77 -22.81 16 14 Si 0.80 20.69 26.54 -169.99 -4.51 16.18 16 15 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.22 -5.85 5.61 56.52 0.32 -5.53 16 18 C 0.13 2.23 5.39 -2.92 -0.02 2.21 16 19 C -0.10 -1.37 2.53 -91.17 -0.23 -1.60 16 20 H 0.07 0.85 7.32 -51.93 -0.38 0.47 16 21 C -0.15 -1.73 8.88 37.15 0.33 -1.40 16 22 C -0.11 -1.72 4.45 -28.02 -0.12 -1.84 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 25 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 26 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 27 H 0.08 1.59 7.11 -51.93 -0.37 1.22 16 28 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.09 1.55 6.86 -51.93 -0.36 1.20 16 30 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.59 7.03 -51.93 -0.36 1.22 16 33 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.08 1.51 6.15 -51.93 -0.32 1.19 16 37 H 0.06 0.81 7.40 -51.93 -0.38 0.43 16 LS Contribution 291.67 15.07 4.40 4.40 Total: -1.00 -31.11 291.67 -7.55 -38.66 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.89 Total: 1.79 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 0.12 Total: -29.16 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.49 Total: -42.57 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -1.71 Total: -56.00 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.51 Total: 16.18 kcal Atomic # 16 Polarization: 67.15 SS G_CDS: -0.44 Total: 66.71 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.11 -7.55 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723807776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.832 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds