Wall clock time and date at job start Mon Mar 30 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 108.44523 * 2 1 4 4 C 1.47091 * 108.38992 * 117.62259 * 2 1 3 5 5 C 1.54864 * 110.32009 * 183.96967 * 4 2 1 6 6 N 1.44583 * 109.59965 * 288.73234 * 5 4 2 7 7 S 1.65603 * 118.64399 * 270.72447 * 6 5 4 8 8 O 1.42097 * 106.40354 * 203.53873 * 7 6 5 9 9 O 1.42100 * 106.40139 * 336.46300 * 7 6 5 10 10 C 1.76200 * 107.21479 * 90.00224 * 7 6 5 11 11 H 1.08001 * 120.00431 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99905 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00251 * 179.97438 * 12 10 7 14 14 Si 1.86801 * 119.99897 * 359.97438 * 12 10 7 15 15 H 1.48503 * 109.47206 * 90.00203 * 14 12 10 16 16 H 1.48500 * 109.47089 * 210.00406 * 14 12 10 17 17 H 1.48502 * 109.47194 * 330.00189 * 14 12 10 18 18 C 1.47603 * 122.71450 * 90.74940 * 6 5 4 19 19 C 1.53985 * 112.12327 * 317.83592 * 18 6 5 20 20 H 1.09001 * 109.34979 * 79.64991 * 19 18 6 21 21 C 1.52993 * 109.36468 * 199.25870 * 19 18 6 22 22 C 1.50880 * 110.10667 * 319.46147 * 19 18 6 23 23 H 1.09001 * 109.47094 * 177.68946 * 1 2 3 24 24 H 1.09000 * 109.47027 * 297.69023 * 1 2 3 25 25 H 1.09003 * 109.47450 * 57.69196 * 1 2 3 26 26 H 1.08996 * 109.33093 * 304.22845 * 4 2 1 27 27 H 1.08998 * 109.33056 * 63.70902 * 4 2 1 28 28 H 1.09000 * 109.45464 * 48.76877 * 5 4 2 29 29 H 1.09000 * 109.45210 * 168.69506 * 5 4 2 30 30 H 0.96992 * 120.00197 * 179.97438 * 13 12 10 31 31 H 1.09003 * 108.94795 * 78.52964 * 18 6 5 32 32 H 1.09002 * 108.94846 * 197.16104 * 18 6 5 33 33 H 1.09005 * 109.47033 * 180.65120 * 21 19 18 34 34 H 1.08996 * 109.47932 * 300.65030 * 21 19 18 35 35 H 1.09006 * 109.47308 * 60.65464 * 21 19 18 36 36 H 1.09005 * 109.48811 * 331.90799 * 22 19 18 37 37 H 1.09002 * 109.48712 * 211.84429 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8749 1.0340 0.0000 4 6 1.9941 -0.6472 1.2367 5 6 3.5385 -0.5828 1.3305 6 7 4.1213 -1.4777 0.3559 7 16 4.4099 -3.0486 0.7934 8 8 5.4329 -3.5243 -0.0705 9 8 4.5228 -3.0564 2.2099 10 6 2.9610 -3.9728 0.4046 11 1 2.1078 -3.4792 -0.0368 12 6 2.9159 -5.3261 0.6648 13 7 1.8343 -6.0158 0.3752 14 14 4.3913 -6.1798 1.4289 15 1 4.2727 -6.1435 2.9087 16 1 4.4385 -7.5915 0.9705 17 1 5.6357 -5.4831 1.0148 18 6 4.4702 -1.0489 -1.0127 19 6 3.3853 -0.1493 -1.6328 20 1 3.4945 0.8651 -1.2492 21 6 3.5476 -0.1339 -3.1540 22 6 2.0144 -0.6723 -1.2810 23 1 -0.3633 -1.0268 -0.0414 24 1 -0.3633 0.4775 0.9100 25 1 -0.3634 0.5493 -0.8686 26 1 1.5589 -0.1371 2.0960 27 1 1.6756 -1.6896 1.2399 28 1 3.8721 0.4359 1.1328 29 1 3.8541 -0.8800 2.3306 30 1 1.8028 -6.9679 0.5579 31 1 5.4112 -0.4995 -0.9824 32 1 4.5980 -1.9321 -1.6386 33 1 2.7874 0.5118 -3.5940 34 1 4.5374 0.2437 -3.4102 35 1 3.4333 -1.1461 -3.5419 36 1 2.0644 -1.7506 -1.1295 37 1 1.3214 -0.4505 -2.0926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723807776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:26 Heat of formation + Delta-G solvation = -120.197728 kcal Electronic energy + Delta-G solvation = -19606.902501 eV Core-core repulsion = 16702.365043 eV Total energy + Delta-G solvation = -2904.537457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14807 -37.78634 -36.49238 -35.55484 -35.12280 -34.90848 -29.67991 -28.54862 -27.45358 -26.63591 -24.14420 -21.44750 -20.84882 -20.17716 -19.28497 -18.54659 -17.33771 -17.19770 -16.23109 -15.89012 -15.56272 -15.25941 -14.93059 -14.86370 -14.20381 -13.93014 -13.70311 -13.65356 -13.41169 -13.28074 -12.93301 -12.79861 -12.65508 -12.63057 -12.48143 -12.37421 -12.15599 -11.74911 -11.38643 -11.34823 -11.26286 -11.20289 -11.05943 -11.03148 -9.67842 -8.94983 -7.47825 0.15068 1.01735 1.10871 1.18568 1.87442 2.42703 2.46058 3.37959 3.69823 3.87287 3.94786 4.04925 4.20515 4.28642 4.29923 4.44749 4.67569 4.71055 4.79027 4.79684 4.88474 4.94322 4.96688 5.05770 5.09206 5.21630 5.23065 5.36735 5.37398 5.43633 5.50279 5.53459 5.60066 5.70114 6.05258 6.12221 6.56890 8.22247 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.009162 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.828136 B = 3055.318018 C = 3285.809762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 H 0.090 0.910 4 C -0.145 4.145 5 C 0.115 3.885 6 N -0.986 5.986 7 S 2.683 3.317 8 O -1.031 7.031 9 O -1.030 7.030 10 C -1.026 5.026 11 H 0.110 0.890 12 C 0.111 3.889 13 N -0.853 5.853 14 Si 0.818 3.182 15 H -0.241 1.241 16 H -0.220 1.220 17 H -0.232 1.232 18 C 0.120 3.880 19 C -0.091 4.091 20 H 0.098 0.902 21 C -0.144 4.144 22 C -0.116 4.116 23 H 0.030 0.970 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.038 0.962 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.289 0.711 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.180 14.334 -3.268 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.108 0.892 4 C -0.184 4.184 5 C -0.011 4.011 6 N -0.824 5.824 7 S 2.785 3.215 8 O -1.022 7.022 9 O -1.020 7.020 10 C -1.159 5.159 11 H 0.128 0.872 12 C -0.105 4.105 13 N -0.484 5.484 14 Si 0.636 3.364 15 H -0.164 1.164 16 H -0.142 1.142 17 H -0.155 1.155 18 C -0.005 4.005 19 C -0.111 4.111 20 H 0.116 0.884 21 C -0.202 4.202 22 C -0.154 4.154 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.057 0.943 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.882 13.886 -2.900 14.213 hybrid contribution -0.484 -1.292 0.125 1.385 sum 0.398 12.595 -2.775 12.903 Atomic orbital electron populations 1.21962 0.95351 1.00784 1.02385 1.19977 0.95885 1.00368 0.93680 0.89161 1.21479 0.96253 1.01213 0.99494 1.21484 0.92749 0.95681 0.91178 1.56714 1.78443 1.26827 1.20421 1.00952 0.75124 0.72980 0.72492 1.93409 1.60011 1.80419 1.68317 1.93346 1.88792 1.86725 1.33174 1.31047 1.22936 1.05866 1.56036 0.87237 1.25107 0.97482 0.97020 0.90922 1.70015 1.28020 1.09964 1.40397 0.87593 0.82116 0.84354 0.82348 1.16446 1.14226 1.15455 1.21929 0.98615 0.99586 0.80350 1.21314 0.93532 0.99640 0.96598 0.88371 1.21866 1.03017 1.01845 0.93489 1.21322 0.96606 0.99818 0.97622 0.95091 0.91804 0.91449 0.89106 0.94310 0.86959 0.90727 0.90041 0.90210 0.91969 0.90620 0.91179 0.93888 0.94579 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.88 71.98 0.64 -2.93 16 2 C -0.08 -2.08 2.16 -12.77 -0.03 -2.11 16 3 H 0.09 1.80 7.36 -2.39 -0.02 1.79 16 4 C -0.15 -4.49 4.91 29.39 0.14 -4.35 16 5 C 0.11 3.65 5.61 87.37 0.49 4.14 16 6 N -0.99 -37.95 2.53 -512.31 -1.30 -39.25 16 7 S 2.68 137.20 4.08 -56.49 -0.23 136.97 16 8 O -1.03 -56.45 14.71 -128.00 -1.88 -58.33 16 9 O -1.03 -55.82 15.28 -128.00 -1.96 -57.77 16 10 C -1.03 -58.51 9.77 67.73 0.66 -57.85 16 11 H 0.11 6.40 6.24 -2.91 -0.02 6.38 16 12 C 0.11 6.49 5.47 84.65 0.46 6.96 16 13 N -0.85 -50.11 13.96 21.45 0.30 -49.81 16 14 Si 0.82 42.11 26.54 68.60 1.82 43.93 16 15 H -0.24 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.22 -9.99 7.11 99.48 0.71 -9.28 16 17 H -0.23 -12.34 5.61 99.48 0.56 -11.78 16 18 C 0.12 3.86 5.39 86.50 0.47 4.33 16 19 C -0.09 -2.25 2.53 -11.15 -0.03 -2.28 16 20 H 0.10 1.90 7.32 -2.39 -0.02 1.89 16 21 C -0.14 -3.01 8.88 71.98 0.64 -2.38 16 22 C -0.12 -3.34 4.45 29.76 0.13 -3.21 16 23 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 1.35 8.07 -2.39 -0.02 1.33 16 25 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 26 H 0.09 2.33 8.06 -2.39 -0.02 2.31 16 27 H 0.04 1.54 7.11 -2.39 -0.02 1.52 16 28 H 0.11 2.61 8.07 -2.39 -0.02 2.59 16 29 H 0.07 2.57 6.86 -2.39 -0.02 2.56 16 30 H 0.29 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.06 2.30 7.03 -2.39 -0.02 2.28 16 33 H 0.07 1.29 8.09 -2.38 -0.02 1.27 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.04 8.13 -2.38 -0.02 1.02 16 36 H 0.04 1.37 6.15 -2.38 -0.01 1.35 16 37 H 0.07 1.89 7.40 -2.39 -0.02 1.87 16 Total: -1.00 -69.25 291.67 1.22 -68.02 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.89 Total: 15.91 kcal Atomic # 6 Polarization: -63.25 SS G_CDS: 3.58 Total: -59.67 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.00 Total: -89.06 kcal Atomic # 8 Polarization: -112.26 SS G_CDS: -3.84 Total: -116.10 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.82 Total: 43.93 kcal Atomic # 16 Polarization: 137.20 SS G_CDS: -0.23 Total: 136.97 kcal Total: -69.25 1.22 -68.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723807776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.175 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds