Wall clock time and date at job start Mon Mar 30 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47205 * 2 1 4 4 C 1.35896 * 116.99756 * 180.02562 * 3 2 1 5 5 C 1.38720 * 119.97683 * 0.02562 * 4 3 2 6 6 C 1.38885 * 120.05366 * 180.02562 * 5 4 3 7 7 N 1.39669 * 120.00282 * 179.97438 * 6 5 4 8 8 C 1.38791 * 119.99566 * 359.69969 * 6 5 4 9 9 C 1.38962 * 119.94329 * 0.55278 * 8 6 5 10 10 N 1.39298 * 120.02395 * 179.71783 * 9 8 6 11 11 C 1.36861 * 120.00021 * 359.72952 * 10 9 8 12 12 H 1.08007 * 119.99473 * 32.08872 * 11 10 9 13 13 C 1.38783 * 120.00159 * 212.08711 * 11 10 9 14 14 N 1.31593 * 120.00089 * 39.42749 * 13 11 10 15 15 Si 1.86798 * 119.99815 * 219.15256 * 13 11 10 16 16 H 1.48502 * 109.46883 * 180.27367 * 15 13 11 17 17 H 1.48501 * 109.47257 * 300.27750 * 15 13 11 18 18 H 1.48507 * 109.47337 * 60.27657 * 15 13 11 19 19 C 1.46496 * 119.99841 * 179.72628 * 10 9 8 20 20 C 1.47201 * 109.47251 * 272.88911 * 19 10 9 21 21 N 7.08439 * 112.78996 * 337.92311 * 2 1 3 22 22 C 1.38588 * 119.97421 * 179.97438 * 4 3 2 23 23 H 1.08996 * 109.47450 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47280 * 300.00456 * 1 2 3 25 25 H 1.09004 * 109.46999 * 60.00110 * 1 2 3 26 26 H 1.08996 * 109.47037 * 239.99771 * 2 1 3 27 27 H 1.08998 * 109.46566 * 120.00437 * 2 1 3 28 28 H 1.08006 * 119.97149 * 0.02562 * 5 4 3 29 29 H 0.96998 * 120.00202 * 359.97438 * 7 6 5 30 30 H 0.97001 * 120.00330 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.02560 * 180.27452 * 8 6 5 32 32 H 0.97000 * 119.99956 * 5.79879 * 14 13 11 33 33 H 1.08996 * 109.47182 * 32.89315 * 19 10 9 34 34 H 1.09001 * 109.46788 * 152.89087 * 19 10 9 35 35 H 1.07997 * 119.99768 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 4.1981 0.4247 -0.0016 6 6 5.5752 0.6047 -0.0016 7 7 6.4245 -0.5040 -0.0021 8 6 6.1074 1.8866 -0.0069 9 6 5.2613 2.9889 -0.0005 10 7 5.7937 4.2761 0.0002 11 6 7.1505 4.4555 0.0002 12 1 7.7896 3.7409 -0.4972 13 6 7.7050 5.5556 0.6392 14 7 7.2138 5.9653 1.7892 15 14 9.1537 6.4501 -0.1294 16 1 9.5609 7.5775 0.7471 17 1 10.2911 5.5081 -0.2850 18 1 8.7607 6.9758 -1.4616 19 6 4.9012 5.4378 0.0008 20 6 4.5467 5.7851 -1.3850 21 7 4.2742 6.0524 -2.4548 22 6 3.8828 2.8061 -0.0011 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.7843 -0.5730 -0.0024 29 1 6.0526 -1.3999 -0.0021 30 1 7.3864 -0.3783 -0.0025 31 1 7.1782 2.0271 -0.0114 32 1 6.5208 5.4505 2.2315 33 1 3.9956 5.2000 0.5588 34 1 5.4053 6.2830 0.4696 35 1 3.2245 3.6622 -0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133960575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:44 Heat of formation + Delta-G solvation = 8.870465 kcal Electronic energy + Delta-G solvation = -19121.127808 eV Core-core repulsion = 16119.035968 eV Total energy + Delta-G solvation = -3002.091841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01194 -39.52499 -38.02404 -36.94045 -34.94555 -33.45146 -32.23399 -30.62236 -29.30650 -28.32465 -25.91294 -24.13878 -22.85117 -21.82324 -20.04412 -19.32691 -18.38698 -17.79908 -16.89319 -16.85925 -16.56032 -16.18600 -16.06257 -15.62962 -15.21042 -14.90619 -14.62770 -14.18171 -13.90926 -13.71846 -13.40143 -13.28587 -13.21686 -12.88427 -12.70228 -12.53319 -12.33313 -11.95921 -11.87751 -11.80536 -11.64070 -11.56512 -10.54268 -9.86349 -8.86298 -8.40983 -8.24570 -5.81339 0.93519 1.00176 1.46255 1.62332 1.66663 1.74401 1.84446 2.34708 2.51325 2.76770 3.03838 3.06904 3.30976 3.44845 4.13114 4.18910 4.22777 4.39492 4.49472 4.54965 4.61045 4.67426 4.77664 4.89284 4.99486 5.06932 5.23611 5.43807 5.65620 5.66907 5.81914 5.99118 6.13022 6.49069 6.56254 6.68686 6.87359 7.17731 7.33141 7.63226 8.49188 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.006057 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.300435 B = 4621.406676 C = 5428.662006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.336 6.336 4 C 0.205 3.795 5 C -0.361 4.361 6 C 0.287 3.713 7 N -0.864 5.864 8 C -0.319 4.319 9 C 0.262 3.738 10 N -0.464 5.464 11 C -0.429 4.429 12 H 0.070 0.930 13 C -0.008 4.008 14 N -0.864 5.864 15 Si 1.094 2.906 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.286 1.286 19 C 0.203 3.797 20 C 0.223 3.777 21 N -0.481 5.481 22 C -0.324 4.324 23 H 0.103 0.897 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.137 0.863 29 H 0.406 0.594 30 H 0.402 0.598 31 H 0.106 0.894 32 H 0.273 0.727 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 -11.755 0.469 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.250 6.250 4 C 0.158 3.842 5 C -0.386 4.386 6 C 0.179 3.821 7 N -0.404 5.404 8 C -0.348 4.348 9 C 0.151 3.849 10 N -0.157 5.157 11 C -0.556 4.556 12 H 0.088 0.912 13 C -0.216 4.216 14 N -0.494 5.494 15 Si 0.917 3.083 16 H -0.203 1.203 17 H -0.194 1.194 18 H -0.213 1.213 19 C 0.075 3.925 20 C -0.096 4.096 21 N -0.160 5.160 22 C -0.349 4.349 23 H 0.121 0.879 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.236 0.764 30 H 0.231 0.769 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.866 -9.653 -0.889 11.331 hybrid contribution -0.414 -1.709 0.209 1.771 sum -6.280 -11.363 -0.680 13.001 Atomic orbital electron populations 1.21807 0.91434 1.04142 1.03008 1.22990 0.96691 0.81070 1.01965 1.86001 1.19240 1.31197 1.88540 1.18250 0.81682 0.93056 0.91228 1.20236 0.91716 0.97973 1.28676 1.17153 0.89696 0.87022 0.88221 1.42309 1.08009 1.05491 1.84577 1.19850 0.98735 0.90335 1.25876 1.17648 0.90964 0.85549 0.90714 1.42136 1.04279 0.99948 1.69387 1.19976 0.81654 1.15325 1.38629 0.91245 1.27136 1.04163 0.97300 0.92964 1.70931 1.25414 1.43019 1.10084 0.83173 0.73698 0.76177 0.75282 1.20298 1.19376 1.21268 1.19124 0.96748 0.92633 0.84031 1.30629 0.91184 0.91561 0.96200 1.80981 1.11316 1.10793 1.12955 1.19471 0.92721 0.95470 1.27254 0.87889 0.91873 0.92194 0.91704 0.91352 0.84496 0.76412 0.76920 0.87611 0.91736 0.85499 0.86318 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 1.09 5.46 71.98 0.39 1.48 16 3 O -0.34 -11.16 10.13 -92.38 -0.94 -12.09 16 4 C 0.20 7.68 6.68 22.47 0.15 7.83 16 5 C -0.36 -12.15 8.88 22.54 0.20 -11.95 16 6 C 0.29 10.12 6.75 38.18 0.26 10.38 16 7 N -0.86 -22.17 9.09 -51.46 -0.47 -22.64 16 8 C -0.32 -13.67 9.10 22.58 0.21 -13.47 16 9 C 0.26 11.85 6.50 38.33 0.25 12.10 16 10 N -0.46 -21.74 2.49 -521.84 -1.30 -23.03 16 11 C -0.43 -21.57 8.43 84.04 0.71 -20.86 16 12 H 0.07 3.63 6.72 -2.91 -0.02 3.61 16 13 C -0.01 -0.40 4.42 84.86 0.38 -0.03 16 14 N -0.86 -43.83 12.32 21.64 0.27 -43.56 16 15 Si 1.09 44.82 30.05 68.60 2.06 46.88 16 16 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 18 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 19 C 0.20 8.40 5.00 84.57 0.42 8.82 16 20 C 0.22 9.62 15.72 89.44 1.41 11.02 16 21 N -0.48 -21.85 18.54 20.00 0.37 -21.48 16 22 C -0.32 -13.54 9.13 22.55 0.21 -13.34 16 23 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.38 7.65 -2.39 -0.02 1.36 16 27 H 0.07 1.42 7.66 -2.39 -0.02 1.41 16 28 H 0.14 3.69 6.28 -2.91 -0.02 3.67 16 29 H 0.41 7.83 8.84 -92.71 -0.82 7.01 16 30 H 0.40 9.46 8.84 -92.71 -0.82 8.64 16 31 H 0.11 4.77 6.32 -2.91 -0.02 4.75 16 32 H 0.27 14.03 8.20 -92.71 -0.76 13.27 16 33 H 0.13 4.57 6.35 -2.39 -0.02 4.55 16 34 H 0.12 5.11 5.87 -2.39 -0.01 5.10 16 35 H 0.11 4.53 6.18 -2.91 -0.02 4.51 16 Total: -1.00 -60.67 303.62 4.84 -55.84 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.48 Total: 29.88 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.31 Total: -9.80 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -1.13 Total: -110.71 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.94 Total: -12.09 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.06 Total: 46.88 kcal Total: -60.67 4.84 -55.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133960575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.706 kcal (2) G-P(sol) polarization free energy of solvation -60.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds