Wall clock time and date at job start Mon Mar 30 2020 04:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34802 * 116.99888 * 2 1 4 4 O 1.21536 * 119.99955 * 359.97438 * 3 2 1 5 5 C 1.46955 * 119.99661 * 180.27663 * 3 2 1 6 6 C 1.33084 * 119.99793 * 179.72569 * 5 3 2 7 7 C 1.50694 * 119.99919 * 179.97438 * 6 5 3 8 8 N 1.46504 * 109.47486 * 124.99630 * 7 6 5 9 9 C 1.39680 * 120.00451 * 179.97438 * 8 7 6 10 10 C 1.39335 * 119.95012 * 359.73085 * 9 8 7 11 11 C 1.38481 * 120.42700 * 179.72073 * 10 9 8 12 12 C 1.37698 * 120.31795 * 0.54906 * 11 10 9 13 13 C 1.40751 * 119.89253 * 359.72477 * 12 11 10 14 14 C 1.41412 * 120.20447 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99749 * 24.40913 * 14 13 12 16 16 C 1.39924 * 119.99957 * 204.41039 * 14 13 12 17 17 N 1.30826 * 120.00088 * 17.88818 * 16 14 13 18 18 Si 1.86801 * 119.99939 * 197.88796 * 16 14 13 19 19 H 1.48503 * 109.47207 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47295 * 120.00265 * 18 16 14 21 21 H 1.48504 * 109.46770 * 240.00005 * 18 16 14 22 22 C 1.38278 * 119.95358 * 179.97438 * 9 8 7 23 23 H 1.09008 * 109.47109 * 60.00574 * 1 2 3 24 24 H 1.09003 * 109.47313 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47317 * 300.00998 * 1 2 3 26 26 H 1.07996 * 119.99921 * 359.71473 * 5 3 2 27 27 H 1.08007 * 119.99817 * 359.97438 * 6 5 3 28 28 H 1.09006 * 109.47178 * 244.99187 * 7 6 5 29 29 H 1.08996 * 109.47426 * 4.99521 * 7 6 5 30 30 H 0.97002 * 119.99234 * 359.97438 * 8 7 6 31 31 H 1.08003 * 119.78844 * 359.97438 * 10 9 8 32 32 H 1.07997 * 119.84200 * 180.27572 * 11 10 9 33 33 H 1.07994 * 120.05048 * 179.74808 * 12 11 10 34 34 H 0.96998 * 120.00251 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.16177 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5315 1.2780 -0.0061 6 6 4.1356 2.4638 -0.0117 7 6 5.6405 2.5426 -0.0174 8 7 6.0827 3.3561 -1.1528 9 6 7.4456 3.5740 -1.3671 10 6 8.3836 3.0218 -0.4973 11 6 9.7375 3.2268 -0.7038 12 6 10.1712 3.9886 -1.7657 13 6 9.2351 4.5575 -2.6495 14 6 9.6732 5.3405 -3.7425 15 1 10.6654 5.1988 -4.1449 16 6 8.8213 6.2989 -4.3025 17 7 7.7820 6.7228 -3.6305 18 14 9.1679 6.9730 -6.0098 19 1 10.3945 6.3365 -6.5537 20 1 8.0185 6.6764 -6.9019 21 1 9.3668 8.4425 -5.9307 22 6 7.8618 4.3415 -2.4394 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5140 0.8898 26 1 4.1196 0.3722 -0.0060 27 1 3.5474 3.3696 -0.0120 28 1 5.9840 2.9981 0.9115 29 1 6.0566 1.5391 -0.1056 30 1 5.4288 3.7433 -1.7556 31 1 8.0529 2.4268 0.3411 32 1 10.4566 2.7907 -0.0262 33 1 11.2279 4.1490 -1.9203 34 1 7.1916 7.3874 -4.0185 35 1 7.1355 4.7729 -3.1123 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313446799.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:22 Heat of formation + Delta-G solvation = -49.798022 kcal Electronic energy + Delta-G solvation = -17968.518170 eV Core-core repulsion = 14931.589522 eV Total energy + Delta-G solvation = -3036.928648 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46700 -37.96631 -36.81145 -35.67199 -33.69117 -32.66883 -29.44795 -29.03562 -27.76848 -25.45119 -25.14653 -22.46287 -21.03917 -19.93027 -19.62070 -18.01371 -17.26253 -16.84408 -16.49267 -15.86585 -14.93800 -14.75745 -14.38935 -14.24954 -13.61296 -13.51619 -13.18248 -12.73521 -12.58945 -12.35118 -12.17158 -11.72722 -11.59530 -11.15975 -11.02501 -11.00849 -10.74155 -10.61627 -10.40440 -9.93740 -9.62155 -9.44858 -9.25255 -8.80046 -7.32672 -6.73850 -6.23053 -4.31759 0.90932 2.54434 2.79020 2.85277 3.10812 3.16255 3.20904 3.31887 3.97989 4.31620 4.59201 4.71524 4.85264 4.88652 4.93073 5.04460 5.27029 5.51442 5.72964 5.82248 5.99926 6.18611 6.23568 6.26698 6.54747 6.85494 7.06629 7.13252 7.35252 7.40525 7.57071 7.76319 7.93546 8.07544 8.16181 8.46796 8.62396 8.81185 9.00341 9.09399 10.25111 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.003647 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.402852 B = 7676.632291 C = 8595.935759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.497 3.503 4 O -0.514 6.514 5 C -0.194 4.194 6 C -0.047 4.047 7 C 0.156 3.844 8 N -0.759 5.759 9 C 0.214 3.786 10 C -0.300 4.300 11 C -0.066 4.066 12 C -0.256 4.256 13 C 0.138 3.862 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.904 3.096 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.229 4.229 23 H 0.063 0.937 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.143 0.857 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.393 0.607 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.277 0.723 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 -9.384 5.210 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.343 3.657 4 O -0.404 6.404 5 C -0.214 4.214 6 C -0.066 4.066 7 C 0.031 3.969 8 N -0.394 5.394 9 C 0.116 3.884 10 C -0.323 4.323 11 C -0.085 4.085 12 C -0.276 4.276 13 C 0.135 3.865 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.140 4.140 17 N -0.417 5.417 18 Si 0.729 3.271 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.253 4.253 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.160 0.840 27 H 0.150 0.850 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.966 -9.042 5.367 15.193 hybrid contribution -0.455 0.588 -0.875 1.149 sum -11.421 -8.454 4.492 14.903 Atomic orbital electron populations 1.23260 0.76279 1.03643 1.02595 1.86600 1.23419 1.32911 1.84380 1.21638 0.90221 0.81258 0.72584 1.90863 1.67270 1.36057 1.46190 1.21906 0.89622 1.00139 1.09751 1.24126 0.97312 0.97962 0.87158 1.20223 0.88109 0.96648 0.91941 1.44277 1.04954 1.59272 1.30887 1.17613 0.81573 0.94556 0.94686 1.19874 0.92793 1.15004 1.04616 1.20291 0.94104 0.97433 0.96646 1.20883 0.97723 1.09452 0.99567 1.17332 0.90755 0.88274 0.90146 1.19589 1.00621 1.16160 1.12956 0.90491 1.25884 0.94125 0.95481 0.98524 1.69865 1.12615 1.23248 1.35976 0.86336 0.79614 0.78764 0.82416 1.18443 1.19828 1.20118 1.20725 0.96820 1.07055 1.00661 0.91859 0.88069 0.91903 0.83953 0.85012 0.90878 0.91768 0.77370 0.89586 0.89536 0.89320 0.91193 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.98 10.58 -40.77 -0.43 -4.41 16 3 C 0.50 6.33 7.91 34.26 0.27 6.60 16 4 O -0.51 -7.87 16.01 -19.29 -0.31 -8.18 16 5 C -0.19 -2.21 9.76 -37.85 -0.37 -2.58 16 6 C -0.05 -0.57 9.21 -36.10 -0.33 -0.90 16 7 C 0.16 2.20 5.35 -5.19 -0.03 2.17 16 8 N -0.76 -13.89 5.72 -59.86 -0.34 -14.23 16 9 C 0.21 4.86 6.64 -83.86 -0.56 4.30 16 10 C -0.30 -6.62 9.32 -39.08 -0.36 -6.99 16 11 C -0.07 -1.50 10.02 -39.69 -0.40 -1.89 16 12 C -0.26 -6.39 9.79 -38.83 -0.38 -6.77 16 13 C 0.14 3.72 5.57 -106.85 -0.60 3.13 16 14 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 15 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 16 C 0.08 1.96 5.14 -17.35 -0.09 1.87 16 17 N -0.79 -20.56 10.96 55.55 0.61 -19.95 16 18 Si 0.90 18.83 29.60 -169.99 -5.03 13.80 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 22 C -0.23 -5.91 8.53 -38.68 -0.33 -6.24 16 23 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.14 1.35 7.87 -52.49 -0.41 0.93 16 27 H 0.13 1.68 7.49 -52.48 -0.39 1.28 16 28 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 29 H 0.06 0.87 7.63 -51.93 -0.40 0.47 16 30 H 0.39 6.92 8.47 -40.82 -0.35 6.58 16 31 H 0.09 1.67 6.70 -52.48 -0.35 1.31 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 34 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 35 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -29.88 310.03 -7.58 -37.45 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.30 Total: 9.55 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -2.45 Total: -18.71 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.27 Total: -34.18 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.74 Total: -12.59 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.88 -7.58 -37.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313446799.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.343 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds