Wall clock time and date at job start Mon Mar 30 2020 04:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34802 * 116.99888 * 2 1 4 4 O 1.21536 * 119.99955 * 359.97438 * 3 2 1 5 5 C 1.46955 * 119.99661 * 180.27663 * 3 2 1 6 6 C 1.33084 * 119.99793 * 179.72569 * 5 3 2 7 7 C 1.50694 * 119.99919 * 179.97438 * 6 5 3 8 8 N 1.46504 * 109.47486 * 124.99630 * 7 6 5 9 9 C 1.39680 * 120.00451 * 179.97438 * 8 7 6 10 10 C 1.39335 * 119.95012 * 359.73085 * 9 8 7 11 11 C 1.38481 * 120.42700 * 179.72073 * 10 9 8 12 12 C 1.37698 * 120.31795 * 0.54906 * 11 10 9 13 13 C 1.40751 * 119.89253 * 359.72477 * 12 11 10 14 14 C 1.41412 * 120.20447 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99749 * 24.40913 * 14 13 12 16 16 C 1.39924 * 119.99957 * 204.41039 * 14 13 12 17 17 N 1.30826 * 120.00088 * 17.88818 * 16 14 13 18 18 Si 1.86801 * 119.99939 * 197.88796 * 16 14 13 19 19 H 1.48503 * 109.47207 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47295 * 120.00265 * 18 16 14 21 21 H 1.48504 * 109.46770 * 240.00005 * 18 16 14 22 22 C 1.38278 * 119.95358 * 179.97438 * 9 8 7 23 23 H 1.09008 * 109.47109 * 60.00574 * 1 2 3 24 24 H 1.09003 * 109.47313 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47317 * 300.00998 * 1 2 3 26 26 H 1.07996 * 119.99921 * 359.71473 * 5 3 2 27 27 H 1.08007 * 119.99817 * 359.97438 * 6 5 3 28 28 H 1.09006 * 109.47178 * 244.99187 * 7 6 5 29 29 H 1.08996 * 109.47426 * 4.99521 * 7 6 5 30 30 H 0.97002 * 119.99234 * 359.97438 * 8 7 6 31 31 H 1.08003 * 119.78844 * 359.97438 * 10 9 8 32 32 H 1.07997 * 119.84200 * 180.27572 * 11 10 9 33 33 H 1.07994 * 120.05048 * 179.74808 * 12 11 10 34 34 H 0.96998 * 120.00251 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.16177 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5315 1.2780 -0.0061 6 6 4.1356 2.4638 -0.0117 7 6 5.6405 2.5426 -0.0174 8 7 6.0827 3.3561 -1.1528 9 6 7.4456 3.5740 -1.3671 10 6 8.3836 3.0218 -0.4973 11 6 9.7375 3.2268 -0.7038 12 6 10.1712 3.9886 -1.7657 13 6 9.2351 4.5575 -2.6495 14 6 9.6732 5.3405 -3.7425 15 1 10.6654 5.1988 -4.1449 16 6 8.8213 6.2989 -4.3025 17 7 7.7820 6.7228 -3.6305 18 14 9.1679 6.9730 -6.0098 19 1 10.3945 6.3365 -6.5537 20 1 8.0185 6.6764 -6.9019 21 1 9.3668 8.4425 -5.9307 22 6 7.8618 4.3415 -2.4394 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5140 0.8898 26 1 4.1196 0.3722 -0.0060 27 1 3.5474 3.3696 -0.0120 28 1 5.9840 2.9981 0.9115 29 1 6.0566 1.5391 -0.1056 30 1 5.4288 3.7433 -1.7556 31 1 8.0529 2.4268 0.3411 32 1 10.4566 2.7907 -0.0262 33 1 11.2279 4.1490 -1.9203 34 1 7.1916 7.3874 -4.0185 35 1 7.1355 4.7729 -3.1123 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313446799.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:22 Heat of formation + Delta-G solvation = -66.848358 kcal Electronic energy + Delta-G solvation = -17969.257528 eV Core-core repulsion = 14931.589522 eV Total energy + Delta-G solvation = -3037.668006 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42630 -39.66508 -37.82084 -37.05711 -35.40116 -34.09349 -31.32471 -30.36421 -28.77155 -27.13149 -26.61452 -23.62470 -22.72705 -21.67599 -20.64711 -19.16384 -18.89581 -17.83464 -17.55665 -17.38812 -16.55327 -16.45235 -15.94235 -15.37013 -14.79228 -14.66478 -14.38059 -14.33180 -14.12258 -13.82784 -13.34431 -13.16233 -12.93602 -12.74136 -12.61021 -12.48186 -12.07020 -11.85464 -11.75539 -11.53489 -11.32672 -11.12335 -10.83072 -10.42748 -9.23050 -8.61320 -7.92792 -6.30408 -0.07679 1.09218 1.34710 1.39461 1.53877 1.58370 1.68573 1.82830 2.23861 2.81727 2.93793 3.60658 3.87537 3.96919 4.07563 4.28939 4.30502 4.48362 4.54365 4.64689 4.68331 4.82655 5.00489 5.08052 5.21598 5.25808 5.27229 5.32445 5.46087 5.60034 5.96142 6.12513 6.23184 6.26383 6.58927 6.62311 6.94032 7.01867 7.07498 7.23386 8.39156 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.003647 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.402852 B = 7676.632291 C = 8595.935759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.495 3.505 4 O -0.546 6.546 5 C -0.178 4.178 6 C -0.050 4.050 7 C 0.157 3.843 8 N -0.756 5.756 9 C 0.219 3.781 10 C -0.298 4.298 11 C -0.063 4.063 12 C -0.284 4.284 13 C 0.106 3.894 14 C -0.503 4.503 15 H 0.071 0.929 16 C 0.037 3.963 17 N -0.822 5.822 18 Si 0.978 3.022 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.267 1.267 22 C -0.259 4.259 23 H 0.060 0.940 24 H 0.135 0.865 25 H 0.063 0.937 26 H 0.168 0.832 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.393 0.607 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.284 0.716 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 -10.906 5.884 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.343 3.657 4 O -0.438 6.438 5 C -0.197 4.197 6 C -0.069 4.069 7 C 0.033 3.967 8 N -0.389 5.389 9 C 0.118 3.882 10 C -0.321 4.321 11 C -0.082 4.082 12 C -0.305 4.305 13 C 0.103 3.897 14 C -0.533 4.533 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.448 5.448 18 Si 0.800 3.200 19 H -0.183 1.183 20 H -0.190 1.190 21 H -0.192 1.192 22 C -0.283 4.283 23 H 0.078 0.922 24 H 0.153 0.847 25 H 0.082 0.918 26 H 0.186 0.814 27 H 0.141 0.859 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.227 0.773 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.719 -10.600 6.070 16.928 hybrid contribution -0.357 0.921 -0.942 1.365 sum -12.076 -9.680 5.128 16.304 Atomic orbital electron populations 1.23580 0.74525 1.05887 1.02537 1.86591 1.25179 1.31865 1.83759 1.21892 0.90736 0.81272 0.71818 1.90854 1.68072 1.37168 1.47716 1.22073 0.89148 1.00714 1.07805 1.23829 0.96146 0.98188 0.88774 1.20369 0.89222 0.96617 0.90446 1.44396 1.03356 1.59181 1.31949 1.17714 0.83770 0.93128 0.93554 1.20277 0.92391 1.14425 1.05010 1.20685 0.95336 0.96128 0.96000 1.21048 0.97639 1.11065 1.00759 1.17724 0.91879 0.89088 0.90984 1.19821 1.01159 1.17799 1.14507 0.91074 1.26698 0.93667 0.95273 1.02169 1.69920 1.13481 1.23834 1.37614 0.85222 0.79487 0.78208 0.77128 1.18307 1.19004 1.19170 1.20661 0.96235 1.09124 1.02252 0.92158 0.84718 0.91798 0.81421 0.85860 0.90211 0.90099 0.77295 0.86085 0.86122 0.89263 0.90523 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.59 16 2 O -0.36 -7.20 10.58 -57.14 -0.60 -7.80 16 3 C 0.50 11.79 7.91 70.11 0.55 12.35 16 4 O -0.55 -16.30 16.01 19.72 0.32 -15.98 16 5 C -0.18 -3.59 9.76 23.40 0.23 -3.36 16 6 C -0.05 -1.13 9.21 24.53 0.23 -0.91 16 7 C 0.16 4.01 5.35 85.63 0.46 4.47 16 8 N -0.76 -26.74 5.72 -343.30 -1.96 -28.71 16 9 C 0.22 9.82 6.64 38.16 0.25 10.07 16 10 C -0.30 -12.48 9.32 22.59 0.21 -12.27 16 11 C -0.06 -2.75 10.02 22.20 0.22 -2.53 16 12 C -0.28 -14.42 9.79 22.76 0.22 -14.20 16 13 C 0.11 5.92 5.57 -21.31 -0.12 5.80 16 14 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 15 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 16 C 0.04 1.90 5.14 85.25 0.44 2.33 16 17 N -0.82 -44.01 10.96 21.82 0.24 -43.77 16 18 Si 0.98 39.37 29.60 68.60 2.03 41.40 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 20 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 22 C -0.26 -13.71 8.53 22.85 0.20 -13.51 16 23 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.17 2.52 7.87 -2.91 -0.02 2.49 16 27 H 0.12 3.04 7.49 -2.91 -0.02 3.02 16 28 H 0.08 1.99 7.93 -2.38 -0.02 1.97 16 29 H 0.08 1.86 7.63 -2.39 -0.02 1.84 16 30 H 0.39 13.77 8.47 -92.71 -0.79 12.98 16 31 H 0.12 4.17 6.70 -2.91 -0.02 4.15 16 32 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 35 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 Total: -1.00 -66.12 310.03 4.64 -61.49 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.32 Total: 31.44 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 4.30 Total: -38.07 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.73 Total: -72.48 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.29 Total: -23.79 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -66.12 4.64 -61.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313446799.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.359 kcal (2) G-P(sol) polarization free energy of solvation -66.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds