Wall clock time and date at job start Mon Mar 30 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00029 * 2 1 4 4 H 1.48497 * 109.47680 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47288 * 300.00521 * 3 2 1 6 6 H 1.48503 * 109.47044 * 60.00189 * 3 2 1 7 7 C 1.37879 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99689 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46791 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47090 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47465 * 180.02562 * 12 11 10 14 14 N 1.40164 * 126.21089 * 270.02537 * 13 12 11 15 15 C 1.31270 * 107.88877 * 179.97438 * 14 13 12 16 16 C 1.41784 * 132.01036 * 180.02562 * 15 14 13 17 17 C 1.35525 * 119.32577 * 179.97438 * 16 15 14 18 18 C 1.40999 * 119.86012 * 0.02562 * 17 16 15 19 19 C 1.34454 * 120.59927 * 359.97438 * 18 17 16 20 20 N 1.37469 * 120.68031 * 0.02562 * 19 18 17 21 21 C 1.34816 * 131.80575 * 180.02562 * 20 19 18 22 22 O 1.21895 * 126.05599 * 359.97438 * 21 20 19 23 23 H 0.96998 * 120.00054 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46873 * 60.00194 * 9 7 2 25 25 H 1.08998 * 109.47227 * 300.00820 * 9 7 2 26 26 H 1.08995 * 109.47133 * 60.00199 * 10 9 7 27 27 H 1.08995 * 109.46958 * 299.99515 * 10 9 7 28 28 H 1.09000 * 109.46856 * 60.00346 * 11 10 9 29 29 H 1.08998 * 109.47265 * 300.00053 * 11 10 9 30 30 H 1.09000 * 109.47249 * 59.99890 * 12 11 10 31 31 H 1.09007 * 109.47018 * 300.00254 * 12 11 10 32 32 H 1.08000 * 120.33928 * 359.95948 * 16 15 14 33 33 H 1.08002 * 120.07130 * 179.72359 * 17 16 15 34 34 H 1.07996 * 119.69910 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.65779 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7421 -7.4188 -0.0031 14 7 1.3274 -8.1365 1.1272 15 6 0.7041 -9.2152 0.7134 16 6 0.0871 -10.2822 1.4142 17 6 -0.4941 -11.2873 0.7151 18 6 -0.4788 -11.2622 -0.6946 19 6 0.1076 -10.2482 -1.3547 20 7 0.7040 -9.2167 -0.6692 21 6 1.3445 -8.1083 -1.0920 22 8 1.5308 -7.7861 -2.2527 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8540 -5.0445 -0.8914 29 1 0.8533 -5.0451 0.8885 30 1 3.1013 -6.0928 0.8881 31 1 3.1012 -6.0918 -0.8918 32 1 0.0804 -10.2941 2.4941 33 1 -0.9636 -12.1083 1.2366 34 1 -0.9423 -12.0647 -1.2491 35 1 0.1101 -10.2441 -2.4347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395302147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:32 Heat of formation + Delta-G solvation = 38.835643 kcal Electronic energy + Delta-G solvation = -18433.143663 eV Core-core repulsion = 15432.351210 eV Total energy + Delta-G solvation = -3000.792453 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.07280 -39.58193 -38.30686 -36.96865 -35.17477 -34.31757 -33.11959 -30.66626 -29.74408 -27.43851 -25.34571 -24.12679 -23.64906 -22.61076 -21.93838 -19.50515 -18.53491 -18.46752 -18.06090 -17.47494 -16.67286 -16.47258 -16.29499 -15.91940 -15.55756 -14.92809 -14.50393 -14.21861 -14.07804 -13.83059 -13.64530 -12.99090 -12.92938 -12.90893 -12.67503 -12.37874 -12.35998 -12.33030 -11.60130 -11.58177 -11.48664 -11.44761 -11.21845 -10.58856 -10.48164 -8.75534 -8.22136 -6.34106 -0.39396 0.50125 0.53652 1.31005 1.38868 1.39763 1.53483 1.90088 2.39777 2.42234 2.98617 3.10869 3.66259 3.78340 3.87337 3.92481 4.08128 4.20490 4.23877 4.37910 4.45850 4.70113 4.72308 4.86527 4.98967 5.01182 5.11097 5.14903 5.23205 5.28455 5.42427 5.49354 5.68914 5.70741 5.82054 6.20979 6.36566 6.68848 6.83349 7.35523 8.90405 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.046104 B = 0.003226 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.172120 B = 8676.657355 C = 8778.087448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.022 3.978 10 C -0.092 4.092 11 C -0.120 4.120 12 C 0.162 3.838 13 N -0.432 5.432 14 N -0.321 5.321 15 C 0.285 3.715 16 C -0.139 4.139 17 C -0.021 4.021 18 C -0.152 4.152 19 C 0.083 3.917 20 N -0.483 5.483 21 C 0.623 3.377 22 O -0.583 6.583 23 H 0.264 0.736 24 H -0.016 1.016 25 H -0.010 1.010 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.179 0.821 33 H 0.197 0.803 34 H 0.198 0.802 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -28.580 2.499 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.130 4.130 11 C -0.158 4.158 12 C 0.042 3.958 13 N -0.249 5.249 14 N -0.148 5.148 15 C 0.022 3.978 16 C -0.161 4.161 17 C -0.045 4.045 18 C -0.174 4.174 19 C -0.035 4.035 20 N -0.197 5.197 21 C 0.323 3.677 22 O -0.459 6.459 23 H 0.072 0.928 24 H 0.002 0.998 25 H 0.009 0.991 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.197 0.803 33 H 0.214 0.786 34 H 0.215 0.785 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.205 -27.439 2.457 27.549 hybrid contribution -0.136 1.096 -0.895 1.421 sum -0.341 -26.343 1.562 26.392 Atomic orbital electron populations 1.70128 1.08008 1.27764 1.51830 1.26080 0.95819 1.03715 0.94678 0.85319 0.79130 0.78344 0.77768 1.18254 1.20472 1.20212 1.21756 0.93765 0.92155 1.50351 0.91636 1.19014 0.94505 0.93469 0.94481 1.21354 0.98037 0.91901 1.01728 1.21859 0.98433 0.94433 1.01107 1.21773 0.92742 0.75585 1.05674 1.49221 1.51499 1.21706 1.02501 1.77758 1.23085 1.05769 1.08233 1.22396 0.97874 0.96476 0.81100 1.20740 1.02077 0.91132 1.02130 1.21821 0.92120 0.97018 0.93590 1.21435 1.01670 0.98773 0.95526 1.22281 0.95221 0.86137 0.99819 1.43681 1.46459 1.20332 1.09256 1.16863 0.82946 0.81932 0.85956 1.91079 1.64566 1.73400 1.16863 0.92774 0.99801 0.99144 0.91242 0.92246 0.94188 0.92364 0.86220 0.88113 0.80343 0.78594 0.78470 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.32 13.29 21.45 0.28 -59.04 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.95 5.15 30.59 0.16 -3.79 16 11 C -0.12 -4.62 5.54 30.60 0.17 -4.45 16 12 C 0.16 5.20 6.37 86.38 0.55 5.75 16 13 N -0.43 -14.59 3.62 -478.02 -1.73 -16.32 16 14 N -0.32 -9.79 12.62 -54.72 -0.69 -10.48 16 15 C 0.29 6.86 7.87 134.31 1.06 7.92 16 16 C -0.14 -1.76 10.12 22.52 0.23 -1.53 16 17 C -0.02 -0.11 10.06 22.32 0.22 0.11 16 18 C -0.15 -1.02 9.97 22.08 0.22 -0.80 16 19 C 0.08 1.33 10.90 82.94 0.90 2.24 16 20 N -0.48 -12.57 2.93 -482.33 -1.41 -13.98 16 21 C 0.62 21.70 8.70 179.01 1.56 23.26 16 22 O -0.58 -23.83 17.86 -4.97 -0.09 -23.92 16 23 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 24 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.10 3.12 8.09 -2.38 -0.02 3.10 16 32 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.20 -0.75 8.06 -2.91 -0.02 -0.78 16 34 H 0.20 -0.34 8.06 -2.91 -0.02 -0.37 16 35 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -82.95 308.75 5.38 -77.57 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: 1.08 Total: 0.17 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.91 Total: -1.59 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -3.55 Total: -99.82 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.09 Total: -23.92 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -82.95 5.38 -77.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395302147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.408 kcal (2) G-P(sol) polarization free energy of solvation -82.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds