Wall clock time and date at job start Mon Mar 30 2020 04:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47395 * 2 1 4 4 C 1.46900 * 110.99732 * 75.71380 * 3 2 1 5 5 H 1.09007 * 109.46979 * 157.84960 * 4 3 2 6 6 C 1.52999 * 109.47041 * 37.85073 * 4 3 2 7 7 C 1.50697 * 109.47677 * 277.84967 * 4 3 2 8 8 H 1.07995 * 120.00488 * 114.38976 * 7 4 3 9 9 C 1.37882 * 119.99956 * 294.39496 * 7 4 3 10 10 N 1.31506 * 119.99919 * 176.07467 * 9 7 4 11 11 Si 1.86808 * 119.99804 * 356.07429 * 9 7 4 12 12 H 1.48503 * 109.46961 * 88.40308 * 11 9 7 13 13 H 1.48496 * 109.46953 * 208.40298 * 11 9 7 14 14 H 1.48492 * 109.47069 * 328.40523 * 11 9 7 15 15 C 1.46896 * 111.00168 * 199.67265 * 3 2 1 16 16 H 1.09000 * 109.64226 * 187.55949 * 15 3 2 17 17 C 1.53880 * 109.64301 * 307.85446 * 15 3 2 18 18 C 1.55052 * 106.62251 * 167.03754 * 17 15 3 19 19 S 1.83291 * 102.56359 * 317.56487 * 18 17 15 20 20 O 1.42101 * 109.35275 * 269.81679 * 19 18 17 21 21 O 1.42096 * 109.35727 * 136.61470 * 19 18 17 22 22 C 1.54164 * 109.64904 * 67.12781 * 15 3 2 23 23 H 1.08998 * 109.46999 * 293.52669 * 1 2 3 24 24 H 1.08998 * 109.46740 * 53.52513 * 1 2 3 25 25 H 1.08998 * 109.47104 * 173.52538 * 1 2 3 26 26 H 1.09003 * 109.46962 * 239.99885 * 2 1 3 27 27 H 1.08996 * 109.47026 * 120.00652 * 2 1 3 28 28 H 1.08997 * 109.47229 * 289.65503 * 6 4 3 29 29 H 1.09004 * 109.47055 * 169.65397 * 6 4 3 30 30 H 1.09000 * 109.47117 * 49.65765 * 6 4 3 31 31 H 0.97004 * 119.99753 * 179.97438 * 10 9 7 32 32 H 1.08996 * 110.02912 * 286.32067 * 17 15 3 33 33 H 1.08991 * 110.02795 * 47.74363 * 17 15 3 34 34 H 1.09001 * 110.78853 * 199.29788 * 18 17 15 35 35 H 1.08996 * 110.79301 * 75.83208 * 18 17 15 36 36 H 1.09001 * 110.31789 * 331.14744 * 22 15 3 37 37 H 1.08997 * 110.31452 * 93.23386 * 22 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8762 1.9940 1.3290 5 1 2.5703 2.8293 1.4228 6 6 2.1856 0.9505 2.4044 7 6 0.4646 2.4920 1.5037 8 1 -0.1800 2.0398 2.2428 9 6 -0.0040 3.5250 0.7198 10 7 -1.2581 3.9082 0.8179 11 14 1.1428 4.3801 -0.4816 12 1 1.1177 3.6661 -1.7834 13 1 0.6973 5.7830 -0.6779 14 1 2.5248 4.3710 0.0614 15 6 3.4127 1.4508 -0.4617 16 1 3.7960 2.4622 -0.3269 17 6 4.2726 0.4627 0.3460 18 6 5.6264 0.3404 -0.4000 19 16 5.1074 0.2467 -2.1554 20 8 4.9082 -1.1134 -2.5155 21 8 5.9551 1.0724 -2.9419 22 6 3.4837 1.0640 -1.9523 23 1 -0.3633 0.4102 0.9422 24 1 -0.3633 0.6109 -0.8264 25 1 -0.3633 -1.0211 -0.1159 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.3871 0.2091 2.4316 29 1 2.2598 1.4404 3.3753 30 1 3.1303 0.4588 2.1724 31 1 -1.5877 4.6351 0.2667 32 1 4.4349 0.8460 1.3533 33 1 3.7818 -0.5094 0.3905 34 1 6.1512 -0.5675 -0.1027 35 1 6.2450 1.2208 -0.2259 36 1 2.6783 0.3735 -2.2029 37 1 3.4258 1.9549 -2.5776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395720129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:23 Heat of formation + Delta-G solvation = -46.859964 kcal Electronic energy + Delta-G solvation = -19484.522355 eV Core-core repulsion = 16583.165062 eV Total energy + Delta-G solvation = -2901.357293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.15982 -37.00649 -36.00322 -34.54025 -32.25013 -30.67864 -30.08348 -27.64648 -25.95665 -24.15736 -22.50397 -20.60645 -18.83676 -18.76884 -17.18970 -16.75350 -16.55464 -15.61476 -15.22325 -14.82551 -14.34447 -14.22113 -13.87657 -13.17160 -12.85172 -12.45737 -12.24985 -12.06990 -12.06467 -12.01826 -11.96077 -11.66655 -11.47379 -11.05359 -10.82924 -10.71286 -10.70248 -10.53931 -10.27146 -10.04293 -9.81895 -9.62023 -9.14128 -8.53884 -7.43749 -6.08082 -4.10458 0.07805 2.52905 3.38360 3.45017 3.49884 3.59630 3.99845 4.38819 4.50801 4.54801 4.66150 4.82843 4.88172 5.08358 5.39895 5.46528 5.53041 5.66596 5.76544 5.92114 5.95049 6.09554 6.12017 6.23947 6.27115 6.39554 6.52959 6.70432 6.92377 6.96225 7.40007 7.61885 7.86120 8.07841 8.48141 8.91715 9.57231 11.02346 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.008052 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.708152 B = 3476.575166 C = 3822.706080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.047 3.953 3 N -0.513 5.513 4 C 0.167 3.833 5 H 0.042 0.958 6 C -0.176 4.176 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.087 3.913 10 N -0.897 5.897 11 Si 0.902 3.098 12 H -0.270 1.270 13 H -0.307 1.307 14 H -0.274 1.274 15 C 0.079 3.921 16 H 0.096 0.904 17 C -0.159 4.159 18 C -0.584 4.584 19 S 2.376 3.624 20 O -0.943 6.943 21 O -0.947 6.947 22 C -0.581 4.581 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.138 -6.815 -1.723 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 N -0.237 5.237 4 C 0.063 3.937 5 H 0.060 0.940 6 C -0.235 4.235 7 C -0.537 4.537 8 H 0.091 0.909 9 C -0.117 4.117 10 N -0.534 5.534 11 Si 0.732 3.268 12 H -0.196 1.196 13 H -0.236 1.236 14 H -0.200 1.200 15 C -0.032 4.032 16 H 0.115 0.885 17 C -0.199 4.199 18 C -0.715 4.715 19 S 2.561 3.439 20 O -0.940 6.940 21 O -0.944 6.944 22 C -0.712 4.712 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.157 -6.800 -2.936 13.392 hybrid contribution 0.568 0.414 0.479 0.850 sum 11.724 -6.387 -2.457 13.575 Atomic orbital electron populations 1.21783 0.94090 0.98504 1.05185 1.22143 0.97451 0.89402 0.99036 1.63209 1.12508 1.17445 1.30576 1.19960 0.98895 0.92502 0.82336 0.93998 1.22619 0.99737 1.00600 1.00515 1.20781 0.95786 1.16854 1.20285 0.90887 1.24932 0.94635 0.96290 0.95839 1.69940 1.14616 1.28616 1.40217 0.86454 0.80925 0.76766 0.82693 1.19551 1.23554 1.19959 1.22269 0.92477 0.99462 0.88989 0.88545 1.23383 0.91372 1.02729 1.02428 1.30550 1.06535 1.11146 1.23222 1.09345 0.79396 0.76139 0.79016 1.93598 1.85828 1.32770 1.81848 1.93587 1.64607 1.69441 1.66815 1.30660 1.20689 1.14325 1.05483 0.89809 0.92521 0.95111 0.93133 0.94011 0.92538 0.93229 0.93893 0.92758 0.87551 0.89110 0.84944 0.84676 0.83680 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.27 37.16 0.34 -2.25 16 2 C 0.05 0.79 3.73 -3.82 -0.01 0.78 16 3 N -0.51 -9.54 2.74 -218.83 -0.60 -10.14 16 4 C 0.17 3.43 1.55 -68.87 -0.11 3.32 16 5 H 0.04 0.89 6.15 -51.93 -0.32 0.57 16 6 C -0.18 -3.03 7.58 37.16 0.28 -2.75 16 7 C -0.50 -12.59 6.64 -34.44 -0.23 -12.82 16 8 H 0.07 2.02 7.64 -52.49 -0.40 1.62 16 9 C 0.09 2.35 5.47 -17.82 -0.10 2.25 16 10 N -0.90 -26.07 13.96 55.43 0.77 -25.29 16 11 Si 0.90 21.51 26.13 -169.99 -4.44 17.07 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.31 -7.57 7.11 56.52 0.40 -7.17 16 14 H -0.27 -6.10 6.12 56.52 0.35 -5.76 16 15 C 0.08 1.19 2.29 -66.65 -0.15 1.04 16 16 H 0.10 1.47 7.37 -51.93 -0.38 1.09 16 17 C -0.16 -1.90 4.01 -25.19 -0.10 -2.00 16 18 C -0.58 -5.72 7.31 38.24 0.28 -5.44 16 19 S 2.38 29.59 6.11 -107.50 -0.66 28.94 16 20 O -0.94 -14.40 18.15 -57.71 -1.05 -15.45 16 21 O -0.95 -14.61 18.14 -57.71 -1.05 -15.66 16 22 C -0.58 -7.82 6.66 37.77 0.25 -7.57 16 23 H 0.08 1.79 5.59 -51.93 -0.29 1.50 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.75 5.99 -51.93 -0.31 0.44 16 27 H 0.04 0.65 4.44 -51.93 -0.23 0.42 16 28 H 0.06 0.99 6.44 -51.93 -0.33 0.66 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.61 4.03 -51.93 -0.21 0.40 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.11 1.23 6.16 -51.93 -0.32 0.91 16 33 H 0.09 1.05 6.08 -51.93 -0.32 0.73 16 34 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.15 1.93 6.13 -51.93 -0.32 1.61 16 37 H 0.14 1.80 8.14 -51.93 -0.42 1.37 16 LS Contribution 283.23 15.07 4.27 4.27 Total: -1.00 -32.33 283.23 -7.45 -39.78 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.16 Total: 1.93 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 0.46 Total: -25.44 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.17 Total: -35.43 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -2.09 Total: -31.11 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.44 Total: 17.07 kcal Atomic # 16 Polarization: 29.59 SS G_CDS: -0.66 Total: 28.94 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.33 -7.45 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395720129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.077 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds