Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47395 * 2 1 4 4 C 1.46900 * 110.99732 * 75.71380 * 3 2 1 5 5 H 1.09007 * 109.46979 * 157.84960 * 4 3 2 6 6 C 1.52999 * 109.47041 * 37.85073 * 4 3 2 7 7 C 1.50697 * 109.47677 * 277.84967 * 4 3 2 8 8 H 1.07995 * 120.00488 * 114.38976 * 7 4 3 9 9 C 1.37882 * 119.99956 * 294.39496 * 7 4 3 10 10 N 1.31506 * 119.99919 * 176.07467 * 9 7 4 11 11 Si 1.86808 * 119.99804 * 356.07429 * 9 7 4 12 12 H 1.48503 * 109.46961 * 88.40308 * 11 9 7 13 13 H 1.48496 * 109.46953 * 208.40298 * 11 9 7 14 14 H 1.48492 * 109.47069 * 328.40523 * 11 9 7 15 15 C 1.46896 * 111.00168 * 199.67265 * 3 2 1 16 16 H 1.09000 * 109.64226 * 187.55949 * 15 3 2 17 17 C 1.53880 * 109.64301 * 307.85446 * 15 3 2 18 18 C 1.55052 * 106.62251 * 167.03754 * 17 15 3 19 19 S 1.83291 * 102.56359 * 317.56487 * 18 17 15 20 20 O 1.42101 * 109.35275 * 269.81679 * 19 18 17 21 21 O 1.42096 * 109.35727 * 136.61470 * 19 18 17 22 22 C 1.54164 * 109.64904 * 67.12781 * 15 3 2 23 23 H 1.08998 * 109.46999 * 293.52669 * 1 2 3 24 24 H 1.08998 * 109.46740 * 53.52513 * 1 2 3 25 25 H 1.08998 * 109.47104 * 173.52538 * 1 2 3 26 26 H 1.09003 * 109.46962 * 239.99885 * 2 1 3 27 27 H 1.08996 * 109.47026 * 120.00652 * 2 1 3 28 28 H 1.08997 * 109.47229 * 289.65503 * 6 4 3 29 29 H 1.09004 * 109.47055 * 169.65397 * 6 4 3 30 30 H 1.09000 * 109.47117 * 49.65765 * 6 4 3 31 31 H 0.97004 * 119.99753 * 179.97438 * 10 9 7 32 32 H 1.08996 * 110.02912 * 286.32067 * 17 15 3 33 33 H 1.08991 * 110.02795 * 47.74363 * 17 15 3 34 34 H 1.09001 * 110.78853 * 199.29788 * 18 17 15 35 35 H 1.08996 * 110.79301 * 75.83208 * 18 17 15 36 36 H 1.09001 * 110.31789 * 331.14744 * 22 15 3 37 37 H 1.08997 * 110.31452 * 93.23386 * 22 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8762 1.9940 1.3290 5 1 2.5703 2.8293 1.4228 6 6 2.1856 0.9505 2.4044 7 6 0.4646 2.4920 1.5037 8 1 -0.1800 2.0398 2.2428 9 6 -0.0040 3.5250 0.7198 10 7 -1.2581 3.9082 0.8179 11 14 1.1428 4.3801 -0.4816 12 1 1.1177 3.6661 -1.7834 13 1 0.6973 5.7830 -0.6779 14 1 2.5248 4.3710 0.0614 15 6 3.4127 1.4508 -0.4617 16 1 3.7960 2.4622 -0.3269 17 6 4.2726 0.4627 0.3460 18 6 5.6264 0.3404 -0.4000 19 16 5.1074 0.2467 -2.1554 20 8 4.9082 -1.1134 -2.5155 21 8 5.9551 1.0724 -2.9419 22 6 3.4837 1.0640 -1.9523 23 1 -0.3633 0.4102 0.9422 24 1 -0.3633 0.6109 -0.8264 25 1 -0.3633 -1.0211 -0.1159 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.3871 0.2091 2.4316 29 1 2.2598 1.4404 3.3753 30 1 3.1303 0.4588 2.1724 31 1 -1.5877 4.6351 0.2667 32 1 4.4349 0.8460 1.3533 33 1 3.7818 -0.5094 0.3905 34 1 6.1512 -0.5675 -0.1027 35 1 6.2450 1.2208 -0.2259 36 1 2.6783 0.3735 -2.2029 37 1 3.4258 1.9549 -2.5776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395720129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -72.130527 kcal Electronic energy + Delta-G solvation = -19485.618169 eV Core-core repulsion = 16583.165062 eV Total energy + Delta-G solvation = -2902.453107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47052 -38.08201 -37.08096 -35.85637 -34.07942 -32.15003 -31.25128 -28.96041 -27.63184 -25.26365 -23.97605 -21.92180 -20.23546 -19.81186 -18.97401 -17.87927 -17.66437 -16.64541 -16.48854 -16.39366 -15.82746 -15.43044 -15.03067 -14.76785 -14.20896 -13.70945 -13.59208 -13.44921 -13.27283 -13.17264 -13.10246 -12.92436 -12.80393 -12.72776 -12.41898 -12.14839 -11.91694 -11.86940 -11.67720 -11.44631 -11.36646 -11.15523 -10.80309 -10.57929 -8.82816 -8.15082 -6.18161 -0.88320 1.44944 1.53374 1.56887 1.59640 2.52899 2.64391 2.96265 3.11518 3.44815 3.57623 3.67568 3.83042 4.00639 4.07592 4.35109 4.52964 4.59154 4.64414 4.70621 4.73870 4.78987 4.80842 4.97015 5.04529 5.10392 5.15129 5.22704 5.40618 5.50774 5.76897 5.81691 6.23478 6.52711 6.67246 6.92327 7.52344 8.98870 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.008052 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.708152 B = 3476.575166 C = 3822.706080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.047 3.953 3 N -0.538 5.538 4 C 0.171 3.829 5 H 0.043 0.957 6 C -0.171 4.171 7 C -0.484 4.484 8 H 0.033 0.967 9 C 0.031 3.969 10 N -0.952 5.952 11 Si 0.951 3.049 12 H -0.270 1.270 13 H -0.323 1.323 14 H -0.243 1.243 15 C 0.070 3.930 16 H 0.097 0.903 17 C -0.161 4.161 18 C -0.553 4.553 19 S 2.394 3.606 20 O -0.972 6.972 21 O -0.979 6.979 22 C -0.588 4.588 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.258 0.742 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.534 -8.234 -1.501 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 N -0.262 5.262 4 C 0.065 3.935 5 H 0.061 0.939 6 C -0.229 4.229 7 C -0.523 4.523 8 H 0.051 0.949 9 C -0.167 4.167 10 N -0.593 5.593 11 Si 0.780 3.220 12 H -0.195 1.195 13 H -0.252 1.252 14 H -0.167 1.167 15 C -0.041 4.041 16 H 0.115 0.885 17 C -0.201 4.201 18 C -0.687 4.687 19 S 2.582 3.418 20 O -0.970 6.970 21 O -0.977 6.977 22 C -0.718 4.718 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.182 0.818 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.573 -8.241 -2.740 16.964 hybrid contribution -0.499 0.773 0.477 1.037 sum 14.073 -7.467 -2.263 16.092 Atomic orbital electron populations 1.21684 0.96240 0.99262 1.01953 1.22196 0.95597 0.89037 1.01187 1.62696 1.15735 1.18595 1.29187 1.19757 0.95377 0.93740 0.84619 0.93908 1.22548 1.01411 0.99656 0.99309 1.21074 0.97661 1.15524 1.18005 0.94861 1.25659 0.95591 0.97573 0.97910 1.70094 1.16830 1.30043 1.42370 0.85638 0.80727 0.74769 0.80879 1.19491 1.25195 1.16725 1.22389 0.90676 1.00865 0.90124 0.88451 1.23352 0.91911 1.02238 1.02551 1.30412 1.05902 1.14019 1.18321 1.08737 0.78169 0.74667 0.80270 1.93560 1.86010 1.34021 1.83370 1.93545 1.64985 1.69992 1.69135 1.30686 1.21871 1.14620 1.04605 0.93250 0.95389 0.92401 0.90653 0.91932 0.93417 0.93333 0.89925 0.93358 0.86241 0.88149 0.81834 0.82241 0.83825 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.27 71.98 0.67 -4.34 16 2 C 0.05 1.46 3.73 86.31 0.32 1.78 16 3 N -0.54 -18.73 2.74 -846.26 -2.31 -21.05 16 4 C 0.17 6.68 1.55 44.17 0.07 6.74 16 5 H 0.04 1.68 6.15 -2.38 -0.01 1.67 16 6 C -0.17 -5.40 7.58 71.98 0.55 -4.85 16 7 C -0.48 -24.93 6.64 25.60 0.17 -24.76 16 8 H 0.03 1.93 7.64 -2.91 -0.02 1.91 16 9 C 0.03 1.69 5.47 84.66 0.46 2.16 16 10 N -0.95 -58.13 13.96 21.45 0.30 -57.83 16 11 Si 0.95 44.52 26.13 68.60 1.79 46.32 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.32 -15.79 7.11 99.48 0.71 -15.08 16 14 H -0.24 -10.02 6.12 99.48 0.61 -9.41 16 15 C 0.07 1.85 2.29 45.61 0.10 1.95 16 16 H 0.10 2.55 7.37 -2.39 -0.02 2.54 16 17 C -0.16 -2.95 4.01 31.59 0.13 -2.82 16 18 C -0.55 -7.55 7.31 72.68 0.53 -7.02 16 19 S 2.39 51.53 6.11 -56.49 -0.34 51.19 16 20 O -0.97 -26.85 18.15 -127.49 -2.31 -29.16 16 21 O -0.98 -27.68 18.14 -127.49 -2.31 -30.00 16 22 C -0.59 -14.17 6.66 72.38 0.48 -13.69 16 23 H 0.05 2.17 5.59 -2.39 -0.01 2.16 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.08 2.00 5.99 -2.39 -0.01 1.98 16 27 H 0.06 1.71 4.44 -2.39 -0.01 1.70 16 28 H 0.05 1.59 6.44 -2.39 -0.02 1.57 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.08 1.93 4.03 -2.39 -0.01 1.92 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.12 1.99 6.16 -2.39 -0.01 1.97 16 33 H 0.10 1.72 6.08 -2.39 -0.01 1.70 16 34 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.14 3.48 6.13 -2.39 -0.01 3.47 16 37 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -73.24 283.23 -0.74 -73.98 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.97 Total: 11.42 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 3.48 Total: -44.86 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -2.02 Total: -78.88 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -4.63 Total: -59.16 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.79 Total: 46.32 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.34 Total: 51.19 kcal Total: -73.24 -0.74 -73.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395720129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.846 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds