Wall clock time and date at job start Mon Mar 30 2020 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42098 * 110.54669 * 2 1 4 4 O 1.42105 * 110.54132 * 223.24658 * 2 1 3 5 5 N 1.65600 * 104.45135 * 111.62660 * 2 1 3 6 6 C 1.46503 * 120.00205 * 269.99968 * 5 2 1 7 7 C 1.53003 * 109.46969 * 266.90184 * 6 5 2 8 8 C 1.50697 * 109.47177 * 174.45476 * 7 6 5 9 9 H 1.08004 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00397 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99729 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00322 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46949 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47178 * 120.00387 * 12 10 8 15 15 H 1.48498 * 109.47117 * 240.00240 * 12 10 8 16 16 C 1.46504 * 120.00118 * 89.99931 * 5 2 1 17 17 C 1.54260 * 110.03385 * 116.91023 * 16 5 2 18 18 C 1.54963 * 104.16185 * 95.75547 * 17 16 5 19 19 C 1.54885 * 102.77909 * 37.88519 * 18 17 16 20 20 C 1.53880 * 110.03172 * 234.12531 * 16 5 2 21 21 H 1.09003 * 109.46952 * 299.99940 * 1 2 3 22 22 H 1.08993 * 109.47527 * 59.99807 * 1 2 3 23 23 H 1.09006 * 109.47323 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46822 * 26.89832 * 6 5 2 25 25 H 1.08996 * 109.46978 * 146.90080 * 6 5 2 26 26 H 1.09003 * 109.46928 * 294.45311 * 7 6 5 27 27 H 1.09003 * 109.47119 * 54.45387 * 7 6 5 28 28 H 0.97004 * 120.00338 * 179.97438 * 11 10 8 29 29 H 1.08999 * 110.01736 * 355.51129 * 16 5 2 30 30 H 1.08999 * 110.48412 * 214.40270 * 17 16 5 31 31 H 1.08999 * 110.48978 * 337.04333 * 17 16 5 32 32 H 1.09001 * 110.71803 * 279.57313 * 18 17 16 33 33 H 1.09003 * 110.92295 * 156.29477 * 18 17 16 34 34 H 1.08997 * 110.48891 * 203.40290 * 19 18 17 35 35 H 1.09004 * 110.59590 * 80.82178 * 19 18 17 36 36 H 1.09003 * 110.03372 * 359.95336 * 20 16 5 37 37 H 1.09007 * 110.03106 * 121.37997 * 20 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 2.4101 0.3269 2.6178 7 6 3.8854 0.7186 2.7223 8 6 4.0525 1.7658 3.7930 9 1 3.1923 2.1172 4.3436 10 6 5.3033 2.2754 4.0698 11 7 6.3506 1.8479 3.3991 12 14 5.5102 3.5740 5.3965 13 1 4.1880 3.8821 5.9981 14 1 6.4258 3.0649 6.4490 15 1 6.0815 4.8069 4.7976 16 6 2.4100 -2.0319 1.6826 17 6 3.8692 -2.3306 2.0842 18 6 3.8287 -2.4058 3.6314 19 6 2.4761 -3.1088 3.9051 20 6 1.5245 -2.5261 2.8399 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8071 1.2211 2.4595 25 1 2.0980 -0.1633 3.5399 26 1 4.4774 -0.1602 2.9781 27 1 4.2237 1.1190 1.7666 28 1 7.2307 2.2066 3.5935 29 1 2.1583 -2.5652 0.7659 30 1 4.1929 -3.2831 1.6645 31 1 4.5273 -1.5254 1.7576 32 1 3.8396 -1.4064 4.0664 33 1 4.6579 -3.0010 4.0141 34 1 2.1185 -2.8714 4.9070 35 1 2.5726 -4.1875 3.7812 36 1 0.9594 -1.6937 3.2594 37 1 0.8431 -3.2993 2.4848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586106185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:35 Heat of formation + Delta-G solvation = -79.350407 kcal Electronic energy + Delta-G solvation = -19209.612787 eV Core-core repulsion = 16306.846602 eV Total energy + Delta-G solvation = -2902.766185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.69540 -36.76123 -35.52459 -34.20809 -32.73096 -29.88432 -29.31383 -28.34259 -26.83553 -24.35212 -21.12102 -20.37800 -19.87426 -18.23590 -17.52244 -16.27578 -15.91146 -15.76112 -15.04205 -14.79330 -14.43871 -13.57831 -13.28855 -13.21054 -13.00080 -12.64100 -12.37583 -12.18355 -11.86186 -11.67632 -11.54888 -11.11101 -10.94169 -10.85229 -10.77273 -10.68895 -10.62759 -10.57286 -10.34249 -10.07006 -9.78457 -9.66702 -9.00323 -8.26840 -8.25663 -5.93650 -3.95385 0.58236 3.02157 3.34631 3.42397 3.45266 4.24253 4.39804 4.50770 4.77865 4.89448 4.97209 5.08019 5.20363 5.42744 5.46205 5.68367 5.71827 5.86538 5.88381 5.89978 6.05123 6.12333 6.21391 6.34141 6.42790 6.55798 6.67745 6.82544 6.89969 6.95584 7.15614 7.79006 7.93350 8.10913 8.45967 9.11556 9.67255 11.17650 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.019464 B = 0.007966 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.228386 B = 3514.041233 C = 4334.526814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.682 4.682 2 S 2.601 3.399 3 O -0.938 6.938 4 O -0.966 6.966 5 N -0.987 5.987 6 C 0.126 3.874 7 C -0.002 4.002 8 C -0.517 4.517 9 H 0.054 0.946 10 C 0.059 3.941 11 N -0.891 5.891 12 Si 0.890 3.110 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.149 3.851 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.137 4.137 21 H 0.126 0.874 22 H 0.120 0.880 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.026 0.974 28 H 0.259 0.741 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 -9.303 -2.672 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.830 4.830 2 S 2.693 3.307 3 O -0.929 6.929 4 O -0.957 6.957 5 N -0.825 5.825 6 C 0.003 3.997 7 C -0.041 4.041 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.211 1.211 16 C 0.042 3.958 17 C -0.172 4.172 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.176 4.176 21 H 0.144 0.856 22 H 0.138 0.862 23 H 0.140 0.860 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.235 -8.994 -3.376 14.782 hybrid contribution -0.507 0.653 1.033 1.323 sum -11.742 -8.341 -2.343 14.592 Atomic orbital electron populations 1.30697 1.30706 1.10705 1.10873 1.05188 0.77360 0.74503 0.73647 1.93671 1.76398 1.37281 1.85520 1.93559 1.77375 1.62063 1.62667 1.57681 1.83046 1.13668 1.28098 1.21645 1.01673 0.89595 0.86797 1.19740 0.89332 0.97118 0.97861 1.21145 0.93193 1.22268 1.19052 0.92745 1.24963 0.96143 0.96742 0.96397 1.69978 0.98920 1.43264 1.40852 0.86582 0.78015 0.81823 0.81791 1.19830 1.21181 1.21110 1.21417 0.96121 0.79806 0.98455 1.22787 0.96155 1.01924 0.96351 1.22718 0.95883 1.02331 0.95951 1.22314 0.96116 0.99187 0.98255 1.22596 0.98145 1.00477 0.96375 0.85571 0.86170 0.86031 0.91744 0.91427 0.94392 0.95532 0.93137 0.89098 0.91820 0.89302 0.88816 0.92261 0.92007 0.92305 0.90623 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -7.10 10.99 101.05 1.11 -5.99 16 2 S 2.60 41.44 6.00 -107.50 -0.64 40.79 16 3 O -0.94 -19.38 16.56 -57.54 -0.95 -20.33 16 4 O -0.97 -17.36 16.64 -57.54 -0.96 -18.32 16 5 N -0.99 -16.25 2.61 -106.11 -0.28 -16.53 16 6 C 0.13 2.43 4.13 -4.04 -0.02 2.41 16 7 C 0.00 -0.06 4.15 -27.88 -0.12 -0.17 16 8 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 9 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 12 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 C 0.15 2.17 3.24 -66.81 -0.22 1.95 16 17 C -0.13 -2.16 5.78 -25.04 -0.14 -2.31 16 18 C -0.13 -2.06 6.08 -24.70 -0.15 -2.21 16 19 C -0.12 -1.51 6.83 -25.08 -0.17 -1.68 16 20 C -0.14 -1.65 6.00 -25.61 -0.15 -1.81 16 21 H 0.13 1.19 8.14 -51.92 -0.42 0.77 16 22 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.12 1.03 8.14 -51.92 -0.42 0.60 16 24 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 25 H 0.07 1.19 5.84 -51.93 -0.30 0.89 16 26 H 0.04 0.96 4.06 -51.93 -0.21 0.75 16 27 H 0.03 0.76 7.68 -51.93 -0.40 0.36 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 29 H 0.09 1.21 7.01 -51.93 -0.36 0.85 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.75 6.19 -51.93 -0.32 1.43 16 32 H 0.09 1.75 5.26 -51.93 -0.27 1.48 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.91 6.55 -51.93 -0.34 0.57 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -33.93 299.18 -8.41 -42.34 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.53 Total: -0.20 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -0.27 Total: -22.85 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.46 Total: -42.59 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.91 Total: -38.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 41.44 SS G_CDS: -0.64 Total: 40.79 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.93 -8.41 -42.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586106185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.015 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds