Wall clock time and date at job start Mon Mar 30 2020 05:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35225 * 119.65620 * 2 1 4 4 C 1.41345 * 119.25557 * 180.02562 * 3 2 1 5 5 N 1.34329 * 120.67043 * 179.97438 * 4 3 2 6 6 C 1.33236 * 119.99962 * 185.35105 * 5 4 3 7 7 O 1.21937 * 120.00120 * 55.47285 * 6 5 4 8 8 N 1.34781 * 120.00110 * 235.47568 * 6 5 4 9 9 C 1.47578 * 134.49348 * 179.97438 * 8 6 5 10 10 C 1.53946 * 86.11470 * 204.63895 * 9 8 6 11 11 C 1.50707 * 113.73946 * 221.94354 * 10 9 8 12 12 H 1.07998 * 119.99547 * 358.07036 * 11 10 9 13 13 C 1.37875 * 120.00087 * 178.07499 * 11 10 9 14 14 N 1.31512 * 119.99767 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00159 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47122 * 59.99985 * 15 13 11 17 17 H 1.48497 * 109.47094 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47177 * 300.00307 * 15 13 11 19 19 C 1.47921 * 134.49777 * 359.97438 * 8 6 5 20 20 C 1.41348 * 118.65705 * 0.27805 * 4 3 2 21 21 C 1.35230 * 119.25533 * 359.44122 * 20 4 3 22 22 N 1.35546 * 120.68892 * 0.57053 * 21 20 4 23 23 H 0.96998 * 119.27375 * 179.73466 * 22 21 20 24 24 H 1.09005 * 109.47307 * 90.00131 * 1 2 3 25 25 H 1.09003 * 109.47380 * 210.00126 * 1 2 3 26 26 H 1.09004 * 109.47473 * 330.00326 * 1 2 3 27 27 H 1.08002 * 120.37049 * 0.04377 * 3 2 1 28 28 H 1.08999 * 113.76727 * 90.33656 * 9 8 6 29 29 H 1.09003 * 113.77018 * 318.93793 * 9 8 6 30 30 H 1.08991 * 113.74545 * 90.73876 * 10 9 8 31 31 H 0.97002 * 120.00119 * 179.97438 * 14 13 11 32 32 H 1.08998 * 113.87456 * 41.10013 * 19 8 6 33 33 H 1.09004 * 113.77025 * 269.60324 * 19 8 6 34 34 H 1.07998 * 120.37747 * 179.72705 * 20 4 3 35 35 H 1.08000 * 119.65972 * 180.27681 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1761 1.1751 0.0000 4 6 3.5895 1.1652 -0.0006 5 7 4.2828 2.3158 -0.0011 6 6 5.6105 2.2935 -0.1092 7 8 6.1360 1.7271 -1.0526 8 7 6.3730 2.8968 0.8242 9 6 7.8256 3.0669 1.0212 10 6 7.4979 3.2286 2.5167 11 6 8.2758 4.3282 3.1927 12 1 9.0068 4.8943 2.6345 13 6 8.0543 4.6114 4.5238 14 7 7.1638 3.9223 5.2033 15 14 9.0189 5.9739 5.3619 16 1 8.7564 7.2626 4.6724 17 1 8.5969 6.0778 6.7819 18 1 10.4700 5.6648 5.2976 19 6 6.0899 3.6544 2.0628 20 6 4.2587 -0.0798 -0.0071 21 6 3.5323 -1.2205 -0.0011 22 7 2.1776 -1.1780 -0.0006 23 1 1.6770 -2.0088 -0.0002 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6365 2.1107 0.0007 28 1 8.2289 3.9683 0.5598 29 1 8.4075 2.1738 0.7930 30 1 7.5150 2.2919 3.0735 31 1 7.0082 4.1213 6.1398 32 1 5.2870 3.2301 2.6657 33 1 5.9845 4.7280 1.9067 34 1 5.3379 -0.1197 -0.0121 35 1 4.0369 -2.1753 -0.0015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596815506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:03 Heat of formation + Delta-G solvation = 61.849551 kcal Electronic energy + Delta-G solvation = -18765.638930 eV Core-core repulsion = 15765.844435 eV Total energy + Delta-G solvation = -2999.794495 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82568 -39.06778 -37.05027 -34.53474 -33.29629 -32.50947 -30.64884 -28.54296 -27.96866 -25.04475 -24.81575 -23.27860 -22.64097 -19.89825 -18.81815 -18.19992 -17.00656 -16.43507 -16.21183 -15.54817 -15.03209 -15.01331 -14.62428 -14.21504 -13.67881 -13.32902 -13.11422 -12.83751 -12.69641 -12.24646 -12.05121 -11.82626 -11.36632 -11.14103 -11.07733 -10.84696 -10.67827 -10.26286 -9.90558 -9.53389 -9.15942 -9.04181 -8.55812 -8.39266 -7.53973 -7.29205 -6.05431 -4.10172 1.02462 1.31855 2.71350 3.33702 3.34999 3.37931 3.40950 3.73962 4.19539 4.28855 4.43697 4.56415 4.75703 5.03454 5.14878 5.20887 5.25810 5.40706 5.44737 5.63956 6.04040 6.15126 6.32902 6.45613 6.53303 6.57924 6.65250 6.76834 6.86977 6.92561 7.03692 7.22397 7.70423 7.92814 8.22177 8.33388 8.92011 9.01596 9.45588 9.55711 11.04510 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.030747 B = 0.004253 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.430546 B = 6581.821362 C = 7010.253141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.147 3.853 3 C -0.193 4.193 4 C 0.308 3.692 5 N -0.614 5.614 6 C 0.679 3.321 7 O -0.622 6.622 8 N -0.637 5.637 9 C 0.113 3.887 10 C 0.032 3.968 11 C -0.517 4.517 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.121 3.879 20 C -0.234 4.234 21 C 0.123 3.877 22 N -0.592 5.592 23 H 0.415 0.585 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.150 0.850 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.149 0.851 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.375 -12.756 -7.023 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.036 3.964 3 C -0.219 4.219 4 C 0.144 3.856 5 N -0.349 5.349 6 C 0.383 3.617 7 O -0.505 6.505 8 N -0.372 5.372 9 C -0.010 4.010 10 C 0.013 3.987 11 C -0.555 4.555 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.002 4.002 20 C -0.262 4.262 21 C -0.006 4.006 22 N -0.198 5.198 23 H 0.250 0.750 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.167 0.833 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.166 0.834 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.218 -12.139 -7.432 20.837 hybrid contribution 0.722 -0.011 0.439 0.845 sum -14.496 -12.149 -6.993 20.165 Atomic orbital electron populations 1.20983 0.87853 1.04715 1.04029 1.20253 0.94562 0.85539 0.96049 1.20400 0.92474 0.97179 1.11894 1.18794 0.92723 0.88429 0.85608 1.68775 1.07524 1.26184 1.32462 1.17007 0.84466 0.78745 0.81528 1.90863 1.75839 1.49903 1.33895 1.50100 1.08727 1.54388 1.23939 1.23390 0.80202 0.99231 0.98222 1.20496 0.91156 0.98009 0.89037 1.20965 1.22163 1.17189 0.95226 0.91978 1.25012 0.95022 0.96316 0.97227 1.69957 1.33170 1.40079 1.09326 0.86607 0.80375 0.82406 0.78333 1.20102 1.21292 1.20127 1.23511 1.01175 0.94827 0.80674 1.21937 1.02140 0.92105 1.09992 1.21679 0.82133 1.00523 0.96283 1.40961 1.06056 1.08405 1.64418 0.74968 0.89542 0.90708 0.88784 0.83274 0.91300 0.92427 0.92153 0.92753 0.92363 0.91348 0.83357 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.07 36.00 0.36 -0.09 16 2 C 0.15 1.20 6.80 -82.02 -0.56 0.64 16 3 C -0.19 -2.48 9.60 -39.47 -0.38 -2.86 16 4 C 0.31 5.51 6.56 -84.41 -0.55 4.96 16 5 N -0.61 -13.94 10.42 -14.59 -0.15 -14.09 16 6 C 0.68 17.18 7.25 -88.28 -0.64 16.54 16 7 O -0.62 -16.80 16.31 4.98 0.08 -16.72 16 8 N -0.64 -16.02 3.62 -184.30 -0.67 -16.69 16 9 C 0.11 2.72 8.39 -2.97 -0.02 2.70 16 10 C 0.03 0.84 3.60 -90.84 -0.33 0.52 16 11 C -0.52 -14.21 8.77 -34.44 -0.30 -14.51 16 12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 15 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.12 3.06 8.40 -2.78 -0.02 3.03 16 20 C -0.23 -3.67 8.92 -39.47 -0.35 -4.02 16 21 C 0.12 1.15 11.17 -16.98 -0.19 0.96 16 22 N -0.59 -3.88 5.24 -9.31 -0.05 -3.93 16 23 H 0.41 0.92 8.77 -40.82 -0.36 0.56 16 24 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 26 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.07 1.61 8.09 -51.93 -0.42 1.19 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.07 1.74 8.09 -51.93 -0.42 1.32 16 34 H 0.15 2.76 6.40 -52.49 -0.34 2.43 16 35 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 307.10 15.07 4.63 4.63 Total: -1.00 -38.13 307.10 -7.99 -46.11 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.46 Total: -0.24 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -3.08 Total: 9.61 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.13 Total: -59.47 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.08 Total: -16.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -38.13 -7.99 -46.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596815506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.962 kcal (2) G-P(sol) polarization free energy of solvation -38.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds