Wall clock time and date at job start Mon Mar 30 2020 05:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38839 * 120.34723 * 2 1 4 4 C 1.38342 * 118.49606 * 180.29748 * 3 2 1 5 5 C 1.39050 * 119.10237 * 359.47451 * 4 3 2 6 6 N 1.39392 * 119.69944 * 180.24873 * 5 4 3 7 7 C 1.34776 * 120.00165 * 174.89932 * 6 5 4 8 8 O 1.21582 * 119.99816 * 5.10313 * 7 6 5 9 9 N 1.34774 * 120.00061 * 185.10689 * 7 6 5 10 10 C 1.47063 * 136.05782 * 359.62367 * 9 7 6 11 11 C 1.53752 * 87.88836 * 152.97046 * 10 9 7 12 12 C 1.50705 * 114.27084 * 139.79117 * 11 10 9 13 13 H 1.07997 * 119.99929 * 266.47275 * 12 11 10 14 14 C 1.37878 * 119.99573 * 86.47187 * 12 11 10 15 15 N 1.31509 * 120.00468 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99625 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47418 * 60.00025 * 16 14 12 18 18 H 1.48502 * 109.46949 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47038 * 300.00156 * 16 14 12 20 20 C 1.47067 * 136.05670 * 180.02562 * 9 7 6 21 21 N 1.32345 * 120.60222 * 0.53900 * 5 4 3 22 22 C 1.31943 * 121.63759 * 359.71497 * 21 5 4 23 23 H 1.09000 * 109.47114 * 89.99679 * 1 2 3 24 24 H 1.08992 * 109.47513 * 210.00040 * 1 2 3 25 25 H 1.09001 * 109.46847 * 329.99972 * 1 2 3 26 26 H 1.08003 * 120.75183 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.45362 * 179.70452 * 4 3 2 28 28 H 0.96999 * 119.99800 * 354.91010 * 6 5 4 29 29 H 1.08999 * 113.46679 * 267.70123 * 10 9 7 30 30 H 1.09000 * 113.47055 * 38.13733 * 10 9 7 31 31 H 1.08999 * 114.39302 * 272.67928 * 11 10 9 32 32 H 0.96996 * 120.00082 * 179.97438 * 15 14 12 33 33 H 1.09001 * 113.46692 * 321.85470 * 20 9 7 34 34 H 1.08995 * 113.47105 * 92.23484 * 20 9 7 35 35 H 1.08001 * 119.57461 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1982 0.0000 4 6 3.5912 1.1535 -0.0063 5 6 4.2279 -0.0827 -0.0013 6 7 5.6206 -0.1422 -0.0023 7 6 6.2443 -1.3319 0.1063 8 8 5.5956 -2.3602 0.1118 9 7 7.5872 -1.3819 0.2090 10 6 8.6845 -0.4031 0.2330 11 6 9.4962 -1.4182 1.0543 12 6 10.9522 -1.5001 0.6739 13 1 11.2817 -2.2347 -0.0459 14 6 11.8634 -0.6371 1.2450 15 7 11.4622 0.2570 2.1219 16 14 13.6680 -0.7382 0.7729 17 1 13.8124 -0.4988 -0.6854 18 1 14.4339 0.2902 1.5221 19 1 14.1924 -2.0867 1.1075 20 6 8.6007 -2.4396 0.3393 21 7 3.5238 -1.2032 -0.0013 22 6 2.2044 -1.1916 -0.0005 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6865 2.1437 0.0004 27 1 4.1683 2.0663 -0.0113 28 1 6.1407 0.6728 -0.0810 29 1 9.1088 -0.2025 -0.7508 30 1 8.4425 0.5071 0.7816 31 1 9.3348 -1.3582 2.1306 32 1 12.1033 0.8638 2.5238 33 1 8.2871 -3.2648 0.9788 34 1 9.0021 -2.7764 -0.6164 35 1 1.6631 -2.1261 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596828704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:20 Heat of formation + Delta-G solvation = 55.832839 kcal Electronic energy + Delta-G solvation = -18603.116582 eV Core-core repulsion = 15603.061183 eV Total energy + Delta-G solvation = -3000.055399 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.63165 -39.34155 -37.37065 -34.76103 -32.94445 -32.63784 -31.41902 -29.09776 -26.62608 -25.02871 -24.95135 -23.82916 -22.02894 -20.65921 -19.09147 -18.03176 -17.11192 -16.61938 -15.90331 -15.26946 -15.23064 -14.71191 -14.62477 -14.28832 -13.96854 -13.59032 -13.07172 -12.76707 -12.64588 -12.54968 -12.23324 -11.81348 -11.54621 -11.34007 -10.97567 -10.83916 -10.41708 -10.32512 -9.97856 -9.77683 -9.33810 -9.19339 -8.80802 -8.60067 -8.12168 -7.72124 -6.20423 -4.26123 1.16932 1.37135 2.76818 3.24157 3.29636 3.32160 3.57022 4.09454 4.13805 4.32776 4.60955 4.77316 4.89381 4.98549 5.08772 5.13419 5.37784 5.44437 5.74525 5.75119 5.86420 6.00653 6.15231 6.21317 6.23012 6.40652 6.43702 6.46664 6.59372 6.70270 6.94450 7.36650 7.54383 7.77672 8.16093 8.22355 8.64097 8.78035 9.10598 9.40870 10.89286 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.055442 B = 0.003614 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.910370 B = 7745.121938 C = 8101.501006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.189 4.189 3 C -0.047 4.047 4 C -0.213 4.213 5 C 0.385 3.615 6 N -0.669 5.669 7 C 0.715 3.285 8 O -0.547 6.547 9 N -0.663 5.663 10 C 0.095 3.905 11 C 0.037 3.963 12 C -0.518 4.518 13 H 0.064 0.936 14 C 0.069 3.931 15 N -0.886 5.886 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.123 3.877 21 N -0.471 5.471 22 C 0.135 3.865 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.413 0.587 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.265 0.735 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.967 4.518 -4.014 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C -0.073 4.073 4 C -0.237 4.237 5 C 0.152 3.848 6 N -0.316 5.316 7 C 0.418 3.582 8 O -0.421 6.421 9 N -0.402 5.402 10 C -0.027 4.027 11 C 0.018 3.982 12 C -0.556 4.556 13 H 0.082 0.918 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C 0.001 3.999 21 N -0.185 5.185 22 C -0.024 4.024 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.249 0.751 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.004 3.060 -3.882 16.750 hybrid contribution 0.869 1.463 -0.333 1.734 sum -15.135 4.523 -4.215 16.349 Atomic orbital electron populations 1.20591 0.90486 1.02643 1.02048 1.20781 0.97401 0.94244 1.06823 1.21152 0.92910 0.98066 0.95188 1.21414 0.95540 0.96971 1.09786 1.18260 0.84005 0.89565 0.92947 1.42790 1.03508 1.10246 1.75028 1.15466 0.80818 0.83267 0.78677 1.90975 1.63640 1.31750 1.55721 1.49233 1.01440 1.14826 1.74677 1.23653 0.83794 0.94578 1.00712 1.20372 0.92936 0.89003 0.95890 1.20880 0.90984 1.18361 1.25361 0.91809 1.25029 0.99138 0.95022 0.94320 1.69937 1.35098 1.19604 1.27678 0.86584 0.84375 0.77967 0.78680 1.20068 1.21239 1.20006 1.23245 0.84250 0.92511 0.99938 1.67752 1.07590 1.28494 1.14654 1.22591 0.88838 0.97428 0.93561 0.91508 0.91534 0.91801 0.84838 0.84776 0.75123 0.90927 0.92568 0.91279 0.92568 0.92371 0.91029 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.03 36.01 0.36 -0.38 16 2 C -0.19 -2.07 5.90 -104.46 -0.62 -2.68 16 3 C -0.05 -0.50 9.85 -39.32 -0.39 -0.88 16 4 C -0.21 -2.62 9.94 -39.24 -0.39 -3.01 16 5 C 0.38 6.31 7.42 -154.72 -1.15 5.16 16 6 N -0.67 -11.48 5.39 -15.81 -0.09 -11.57 16 7 C 0.71 15.14 8.75 -86.92 -0.76 14.38 16 8 O -0.55 -13.37 15.38 5.29 0.08 -13.28 16 9 N -0.66 -13.83 3.69 -190.87 -0.70 -14.54 16 10 C 0.10 1.97 7.87 -8.38 -0.07 1.90 16 11 C 0.04 0.87 3.79 -91.11 -0.35 0.53 16 12 C -0.52 -13.05 8.83 -34.44 -0.30 -13.35 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -23.88 13.26 55.43 0.74 -23.14 16 16 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 20 C 0.12 2.60 8.17 -8.50 -0.07 2.53 16 21 N -0.47 -8.49 7.89 -12.37 -0.10 -8.59 16 22 C 0.13 1.86 10.85 -17.57 -0.19 1.67 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 25 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.41 5.86 8.42 -40.82 -0.34 5.52 16 29 H 0.07 1.47 8.10 -51.93 -0.42 1.04 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.77 8.11 -51.93 -0.42 1.35 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 35 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -31.51 306.98 -9.01 -40.51 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.53 Total: 3.58 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -4.01 Total: 7.53 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.15 Total: -57.83 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.51 -9.01 -40.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596828704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.345 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds