Wall clock time and date at job start Mon Mar 30 2020 05:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38839 * 120.34723 * 2 1 4 4 C 1.38342 * 118.49606 * 180.29748 * 3 2 1 5 5 C 1.39050 * 119.10237 * 359.47451 * 4 3 2 6 6 N 1.39392 * 119.69944 * 180.24873 * 5 4 3 7 7 C 1.34776 * 120.00165 * 174.89932 * 6 5 4 8 8 O 1.21582 * 119.99816 * 5.10313 * 7 6 5 9 9 N 1.34774 * 120.00061 * 185.10689 * 7 6 5 10 10 C 1.47063 * 136.05782 * 359.62367 * 9 7 6 11 11 C 1.53752 * 87.88836 * 152.97046 * 10 9 7 12 12 C 1.50705 * 114.27084 * 139.79117 * 11 10 9 13 13 H 1.07997 * 119.99929 * 266.47275 * 12 11 10 14 14 C 1.37878 * 119.99573 * 86.47187 * 12 11 10 15 15 N 1.31509 * 120.00468 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99625 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47418 * 60.00025 * 16 14 12 18 18 H 1.48502 * 109.46949 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47038 * 300.00156 * 16 14 12 20 20 C 1.47067 * 136.05670 * 180.02562 * 9 7 6 21 21 N 1.32345 * 120.60222 * 0.53900 * 5 4 3 22 22 C 1.31943 * 121.63759 * 359.71497 * 21 5 4 23 23 H 1.09000 * 109.47114 * 89.99679 * 1 2 3 24 24 H 1.08992 * 109.47513 * 210.00040 * 1 2 3 25 25 H 1.09001 * 109.46847 * 329.99972 * 1 2 3 26 26 H 1.08003 * 120.75183 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.45362 * 179.70452 * 4 3 2 28 28 H 0.96999 * 119.99800 * 354.91010 * 6 5 4 29 29 H 1.08999 * 113.46679 * 267.70123 * 10 9 7 30 30 H 1.09000 * 113.47055 * 38.13733 * 10 9 7 31 31 H 1.08999 * 114.39302 * 272.67928 * 11 10 9 32 32 H 0.96996 * 120.00082 * 179.97438 * 15 14 12 33 33 H 1.09001 * 113.46692 * 321.85470 * 20 9 7 34 34 H 1.08995 * 113.47105 * 92.23484 * 20 9 7 35 35 H 1.08001 * 119.57461 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1982 0.0000 4 6 3.5912 1.1535 -0.0063 5 6 4.2279 -0.0827 -0.0013 6 7 5.6206 -0.1422 -0.0023 7 6 6.2443 -1.3319 0.1063 8 8 5.5956 -2.3602 0.1118 9 7 7.5872 -1.3819 0.2090 10 6 8.6845 -0.4031 0.2330 11 6 9.4962 -1.4182 1.0543 12 6 10.9522 -1.5001 0.6739 13 1 11.2817 -2.2347 -0.0459 14 6 11.8634 -0.6371 1.2450 15 7 11.4622 0.2570 2.1219 16 14 13.6680 -0.7382 0.7729 17 1 13.8124 -0.4988 -0.6854 18 1 14.4339 0.2902 1.5221 19 1 14.1924 -2.0867 1.1075 20 6 8.6007 -2.4396 0.3393 21 7 3.5238 -1.2032 -0.0013 22 6 2.2044 -1.1916 -0.0005 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6865 2.1437 0.0004 27 1 4.1683 2.0663 -0.0113 28 1 6.1407 0.6728 -0.0810 29 1 9.1088 -0.2025 -0.7508 30 1 8.4425 0.5071 0.7816 31 1 9.3348 -1.3582 2.1306 32 1 12.1033 0.8638 2.5238 33 1 8.2871 -3.2648 0.9788 34 1 9.0021 -2.7764 -0.6164 35 1 1.6631 -2.1261 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596828704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:20 Heat of formation + Delta-G solvation = 36.476722 kcal Electronic energy + Delta-G solvation = -18603.955926 eV Core-core repulsion = 15603.061183 eV Total energy + Delta-G solvation = -3000.894744 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89442 -40.78036 -38.95882 -36.10809 -34.66145 -33.89284 -32.45932 -30.72715 -27.78812 -26.74239 -26.55796 -24.90816 -23.13252 -22.20976 -20.64296 -19.37658 -18.73162 -18.34792 -17.10984 -16.85485 -16.40930 -16.17455 -16.05536 -15.63929 -15.12873 -14.90439 -14.35584 -14.05674 -13.88071 -13.72457 -13.26332 -13.19976 -13.15396 -12.74877 -12.63200 -12.57361 -12.17212 -11.66904 -11.60993 -11.07317 -11.03699 -10.74028 -10.54101 -10.05294 -9.62840 -9.01860 -8.16036 -6.27211 0.15183 0.42833 1.35134 1.49957 1.51349 1.58494 2.08319 2.45926 2.74901 2.95688 3.14550 3.57087 3.91592 4.07084 4.11398 4.18748 4.24944 4.38965 4.51100 4.63467 4.70708 4.71518 4.88407 4.92241 4.94851 4.97637 5.02559 5.18425 5.38981 5.42985 5.60017 5.81878 5.89126 6.00536 6.23615 6.81299 6.93489 7.17521 7.42268 7.57683 8.93788 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.055442 B = 0.003614 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.910370 B = 7745.121938 C = 8101.501006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.170 4.170 3 C -0.046 4.046 4 C -0.199 4.199 5 C 0.341 3.659 6 N -0.661 5.661 7 C 0.712 3.288 8 O -0.587 6.587 9 N -0.664 5.664 10 C 0.113 3.887 11 C 0.026 3.974 12 C -0.528 4.528 13 H 0.068 0.932 14 C 0.022 3.978 15 N -0.918 5.918 16 Si 0.959 3.041 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.128 3.872 21 N -0.524 5.524 22 C 0.107 3.893 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.177 0.823 27 H 0.163 0.837 28 H 0.425 0.575 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.283 6.249 -4.878 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.174 4.174 3 C -0.071 4.071 4 C -0.223 4.223 5 C 0.110 3.890 6 N -0.310 5.310 7 C 0.415 3.585 8 O -0.464 6.464 9 N -0.403 5.403 10 C -0.010 4.010 11 C 0.007 3.993 12 C -0.567 4.567 13 H 0.086 0.914 14 C -0.178 4.178 15 N -0.556 5.556 16 Si 0.784 3.216 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.198 1.198 20 C 0.005 3.995 21 N -0.238 5.238 22 C -0.051 4.051 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.194 0.806 27 H 0.180 0.820 28 H 0.263 0.737 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.361 4.821 -4.759 18.636 hybrid contribution 1.094 0.931 -0.048 1.437 sum -16.267 5.752 -4.807 17.911 Atomic orbital electron populations 1.20691 0.87547 1.04048 1.03324 1.21211 0.99386 0.93357 1.03418 1.21700 0.92241 0.99620 0.93572 1.21748 0.96611 0.96265 1.07655 1.18610 0.83416 0.90889 0.96049 1.42551 1.04322 1.09189 1.74922 1.15642 0.80480 0.84036 0.78300 1.90935 1.64315 1.33556 1.57593 1.49164 1.01632 1.14534 1.74966 1.23412 0.82983 0.94011 1.00556 1.20237 0.93051 0.91420 0.94595 1.21177 0.91964 1.18242 1.25272 0.91429 1.25754 1.03030 0.94745 0.94302 1.70047 1.36310 1.20454 1.28818 0.85595 0.79568 0.77770 0.78624 1.19175 1.21285 1.19784 1.23144 0.84047 0.92168 1.00126 1.67539 1.09738 1.30475 1.16091 1.22906 0.87903 0.99366 0.94932 0.90099 0.90878 0.89735 0.80602 0.81956 0.73704 0.89995 0.92028 0.94322 0.92622 0.92766 0.89814 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.03 71.24 0.71 -0.38 16 2 C -0.17 -3.29 5.90 -19.76 -0.12 -3.40 16 3 C -0.05 -0.79 9.85 22.44 0.22 -0.57 16 4 C -0.20 -4.44 9.94 22.49 0.22 -4.21 16 5 C 0.34 11.12 7.42 132.93 0.99 12.11 16 6 N -0.66 -22.82 5.39 -322.20 -1.74 -24.55 16 7 C 0.71 30.86 8.75 179.06 1.57 32.43 16 8 O -0.59 -29.73 15.38 -3.97 -0.06 -29.79 16 9 N -0.66 -28.11 3.69 -876.05 -3.23 -31.34 16 10 C 0.11 4.66 7.87 83.26 0.66 5.32 16 11 C 0.03 1.26 3.79 -11.11 -0.04 1.21 16 12 C -0.53 -26.69 8.83 25.60 0.23 -26.46 16 13 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 14 C 0.02 1.13 5.46 84.66 0.46 1.59 16 15 N -0.92 -49.86 13.26 21.45 0.28 -49.57 16 16 Si 0.96 40.50 29.54 68.60 2.03 42.52 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 C 0.13 5.51 8.17 83.18 0.68 6.19 16 21 N -0.52 -19.25 7.89 -193.04 -1.52 -20.78 16 22 C 0.11 2.90 10.85 84.63 0.92 3.82 16 23 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 25 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 26 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 27 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.42 11.86 8.42 -92.71 -0.78 11.08 16 29 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.04 2.06 8.11 -2.39 -0.02 2.04 16 32 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.08 3.38 8.10 -2.39 -0.02 3.37 16 35 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -69.93 306.98 2.58 -67.35 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.32 Total: 18.51 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 6.50 Total: 27.64 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -6.21 Total: -126.24 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.06 Total: -29.79 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -69.93 2.58 -67.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596828704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.831 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds