Wall clock time and date at job start Mon Mar 30 2020 04:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00021 * 2 1 4 4 C 1.50701 * 109.47336 * 66.04563 * 3 2 1 5 5 H 1.07999 * 119.99986 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00128 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99568 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00121 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.47009 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47262 * 119.99935 * 8 6 4 11 11 H 1.48502 * 109.47285 * 240.00448 * 8 6 4 12 12 C 1.46900 * 110.99918 * 236.04491 * 2 1 3 13 13 H 1.08995 * 108.24203 * 181.68542 * 12 2 1 14 14 C 1.53291 * 108.33456 * 64.58103 * 12 2 1 15 15 C 1.51264 * 105.01398 * 145.12074 * 14 12 2 16 16 C 1.54525 * 109.62093 * 105.11846 * 15 14 12 17 17 S 1.82282 * 111.19734 * 320.70721 * 16 15 14 18 18 O 1.42105 * 107.93954 * 203.56600 * 17 16 15 19 19 O 1.42102 * 107.93915 * 74.18982 * 17 16 15 20 20 C 1.79148 * 105.72444 * 318.87792 * 17 16 15 21 21 C 1.44549 * 108.33680 * 298.95665 * 12 2 1 22 22 H 1.08994 * 109.47284 * 183.95341 * 1 2 3 23 23 H 1.09005 * 109.46842 * 303.95667 * 1 2 3 24 24 H 1.09003 * 109.47263 * 63.95469 * 1 2 3 25 25 H 1.09003 * 109.46860 * 186.04825 * 3 2 1 26 26 H 1.09003 * 109.46899 * 306.04387 * 3 2 1 27 27 H 0.97008 * 119.99561 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.32936 * 263.99338 * 14 12 2 29 29 H 1.09000 * 110.32971 * 26.09553 * 14 12 2 30 30 H 1.08999 * 109.45600 * 225.25493 * 15 14 12 31 31 H 1.09002 * 109.45864 * 345.22095 * 15 14 12 32 32 H 1.08996 * 109.21782 * 200.19289 * 16 15 14 33 33 H 1.09000 * 109.00975 * 81.08304 * 16 15 14 34 34 H 1.08997 * 109.44964 * 209.37151 * 20 17 16 35 35 H 1.09004 * 109.44572 * 329.30922 * 20 17 16 36 36 H 1.09007 * 109.22700 * 65.07103 * 21 12 2 37 37 H 1.09003 * 109.19296 * 305.68900 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0747 1.5113 2.0488 6 6 2.0277 3.3492 1.5289 7 7 2.7129 4.0015 0.6153 8 14 1.5840 4.1865 3.1386 9 1 0.8156 3.2443 3.9913 10 1 2.8259 4.5930 3.8439 11 1 0.7569 5.3881 2.8600 12 6 1.9954 -0.7660 -1.1376 13 1 3.0837 -0.7621 -1.0772 14 6 1.5851 -0.0523 -2.4307 15 6 2.7435 -0.2647 -3.3800 16 6 2.3603 -1.3245 -4.4373 17 16 1.3933 -2.6785 -3.6929 18 8 1.5435 -3.8274 -4.5157 19 8 0.0834 -2.1911 -3.4361 20 6 2.1729 -3.0226 -2.1171 21 6 1.5382 -2.1319 -1.0166 22 1 -0.3633 -1.0251 0.0708 23 1 -0.3633 0.5741 0.8525 24 1 -0.3634 0.4512 -0.9233 25 1 3.0798 1.3443 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 2.9875 4.9176 0.7773 28 1 0.6765 -0.4970 -2.8367 29 1 1.4349 1.0112 -2.2450 30 1 2.9828 0.6755 -3.8769 31 1 3.6125 -0.6112 -2.8206 32 1 3.2682 -1.7347 -4.8795 33 1 1.7670 -0.8487 -5.2180 34 1 2.0286 -4.0725 -1.8623 35 1 3.2396 -2.8091 -2.1856 36 1 0.4530 -2.1573 -1.1158 37 1 1.8182 -2.5181 -0.0365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694222956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:53 Heat of formation + Delta-G solvation = -53.269661 kcal Electronic energy + Delta-G solvation = -19015.180353 eV Core-core repulsion = 16113.545115 eV Total energy + Delta-G solvation = -2901.635239 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.32968 -36.88993 -36.05624 -34.59552 -33.19946 -32.16398 -28.47816 -27.34783 -25.73112 -24.56629 -22.18582 -21.42536 -19.32971 -18.64917 -17.04613 -16.88074 -16.18942 -15.82166 -15.10485 -14.61891 -14.41954 -14.05616 -13.87174 -13.55822 -13.14453 -12.93861 -12.67591 -12.21091 -12.03514 -12.01340 -11.92502 -11.61148 -11.36658 -11.01949 -10.93764 -10.82311 -10.60636 -10.43775 -10.38589 -10.22558 -10.05318 -9.73092 -9.21342 -8.45824 -7.23776 -6.06157 -4.06662 -0.03183 2.75833 3.29014 3.36750 3.41514 3.59473 3.86697 4.33762 4.44318 4.50172 4.61703 4.76846 4.91247 5.12581 5.28551 5.30839 5.41850 5.50213 5.58710 5.70178 5.87880 5.90052 6.17964 6.20373 6.24690 6.40165 6.50348 6.62885 6.81182 7.25576 7.35752 7.77391 8.04700 8.16414 8.51484 9.01419 9.57655 11.04726 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.045789 B = 0.005145 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.348779 B = 5441.375612 C = 5709.598252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.534 5.534 3 C 0.189 3.811 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.067 3.933 13 H 0.078 0.922 14 C -0.219 4.219 15 C -0.098 4.098 16 C -0.603 4.603 17 S 2.422 3.578 18 O -0.960 6.960 19 O -0.936 6.936 20 C -0.619 4.619 21 C -0.093 4.093 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.029 0.971 26 H -0.001 1.001 27 H 0.260 0.740 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -11.504 -8.275 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.257 5.257 3 C 0.064 3.936 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.042 4.042 13 H 0.096 0.904 14 C -0.258 4.258 15 C -0.136 4.136 16 C -0.732 4.732 17 S 2.606 3.394 18 O -0.957 6.957 19 O -0.933 6.933 20 C -0.750 4.750 21 C -0.132 4.132 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.017 0.983 27 H 0.070 0.930 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.108 0.892 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.060 -11.977 -8.200 14.515 hybrid contribution 0.425 1.377 0.254 1.463 sum 0.485 -10.600 -7.946 13.256 Atomic orbital electron populations 1.22322 0.88887 0.99963 1.00972 1.62515 1.07215 1.18034 1.37959 1.19803 0.95279 0.81815 0.96657 1.21219 1.34634 0.96902 1.01742 0.91807 1.24977 0.95309 0.97365 0.96974 1.69961 1.38523 1.11400 1.34038 0.86456 0.78129 0.79334 0.83580 1.19662 1.21067 1.21139 1.20619 1.00497 0.93053 0.90074 0.90444 1.23099 0.99406 1.06236 0.97053 1.21503 0.99297 0.98003 0.94813 1.30678 1.15068 1.16559 1.10936 1.07791 0.77595 0.76431 0.77612 1.93538 1.87161 1.48003 1.66985 1.93514 1.34452 1.80466 1.84903 1.30492 1.14047 1.10320 1.20117 1.20231 1.01727 0.93426 0.97799 0.93211 0.90801 0.96179 0.95329 0.98350 0.93016 0.87909 0.87825 0.90050 0.90206 0.85486 0.85013 0.84410 0.84904 0.89201 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 8.72 60.07 0.52 1.04 16 2 N -0.53 -10.77 4.68 -240.97 -1.13 -11.90 16 3 C 0.19 4.66 4.14 -4.98 -0.02 4.64 16 4 C -0.51 -13.80 8.46 -34.44 -0.29 -14.10 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.07 1.05 1.54 -71.50 -0.11 0.94 16 13 H 0.08 1.18 6.62 -51.93 -0.34 0.84 16 14 C -0.22 -3.32 3.89 -27.46 -0.11 -3.42 16 15 C -0.10 -1.14 5.59 -26.81 -0.15 -1.29 16 16 C -0.60 -5.72 6.48 37.96 0.25 -5.47 16 17 S 2.42 27.64 4.90 -107.50 -0.53 27.12 16 18 O -0.96 -13.60 18.05 -57.92 -1.05 -14.65 16 19 O -0.94 -13.83 14.10 -57.92 -0.82 -14.65 16 20 C -0.62 -6.06 5.83 38.29 0.22 -5.84 16 21 C -0.09 -1.23 4.21 -29.54 -0.12 -1.35 16 22 H 0.05 0.82 6.35 -51.93 -0.33 0.49 16 23 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 24 H 0.02 0.38 7.11 -51.93 -0.37 0.01 16 25 H 0.03 0.75 8.01 -51.93 -0.42 0.33 16 26 H 0.00 -0.03 6.19 -51.93 -0.32 -0.35 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 28 H 0.10 1.53 4.47 -51.93 -0.23 1.30 16 29 H 0.10 1.87 5.49 -51.93 -0.28 1.58 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.82 6.41 -51.93 -0.33 0.49 16 32 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.14 1.10 8.14 -51.74 -0.42 0.68 16 35 H 0.13 0.98 7.68 -51.74 -0.40 0.58 16 36 H 0.09 1.24 5.39 -51.93 -0.28 0.96 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 286.84 15.07 4.32 4.32 Total: -1.00 -33.38 286.84 -8.67 -42.05 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.28 Total: 0.17 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 0.09 Total: -23.43 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.39 Total: -37.20 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.86 Total: -29.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 27.64 SS G_CDS: -0.53 Total: 27.12 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.38 -8.67 -42.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694222956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.221 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds