Wall clock time and date at job start Mon Mar 30 2020 04:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00021 * 2 1 4 4 C 1.50701 * 109.47336 * 66.04563 * 3 2 1 5 5 H 1.07999 * 119.99986 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00128 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99568 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00121 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.47009 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47262 * 119.99935 * 8 6 4 11 11 H 1.48502 * 109.47285 * 240.00448 * 8 6 4 12 12 C 1.46900 * 110.99918 * 236.04491 * 2 1 3 13 13 H 1.08995 * 108.24203 * 181.68542 * 12 2 1 14 14 C 1.53291 * 108.33456 * 64.58103 * 12 2 1 15 15 C 1.51264 * 105.01398 * 145.12074 * 14 12 2 16 16 C 1.54525 * 109.62093 * 105.11846 * 15 14 12 17 17 S 1.82282 * 111.19734 * 320.70721 * 16 15 14 18 18 O 1.42105 * 107.93954 * 203.56600 * 17 16 15 19 19 O 1.42102 * 107.93915 * 74.18982 * 17 16 15 20 20 C 1.79148 * 105.72444 * 318.87792 * 17 16 15 21 21 C 1.44549 * 108.33680 * 298.95665 * 12 2 1 22 22 H 1.08994 * 109.47284 * 183.95341 * 1 2 3 23 23 H 1.09005 * 109.46842 * 303.95667 * 1 2 3 24 24 H 1.09003 * 109.47263 * 63.95469 * 1 2 3 25 25 H 1.09003 * 109.46860 * 186.04825 * 3 2 1 26 26 H 1.09003 * 109.46899 * 306.04387 * 3 2 1 27 27 H 0.97008 * 119.99561 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.32936 * 263.99338 * 14 12 2 29 29 H 1.09000 * 110.32971 * 26.09553 * 14 12 2 30 30 H 1.08999 * 109.45600 * 225.25493 * 15 14 12 31 31 H 1.09002 * 109.45864 * 345.22095 * 15 14 12 32 32 H 1.08996 * 109.21782 * 200.19289 * 16 15 14 33 33 H 1.09000 * 109.00975 * 81.08304 * 16 15 14 34 34 H 1.08997 * 109.44964 * 209.37151 * 20 17 16 35 35 H 1.09004 * 109.44572 * 329.30922 * 20 17 16 36 36 H 1.09007 * 109.22700 * 65.07103 * 21 12 2 37 37 H 1.09003 * 109.19296 * 305.68900 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0747 1.5113 2.0488 6 6 2.0277 3.3492 1.5289 7 7 2.7129 4.0015 0.6153 8 14 1.5840 4.1865 3.1386 9 1 0.8156 3.2443 3.9913 10 1 2.8259 4.5930 3.8439 11 1 0.7569 5.3881 2.8600 12 6 1.9954 -0.7660 -1.1376 13 1 3.0837 -0.7621 -1.0772 14 6 1.5851 -0.0523 -2.4307 15 6 2.7435 -0.2647 -3.3800 16 6 2.3603 -1.3245 -4.4373 17 16 1.3933 -2.6785 -3.6929 18 8 1.5435 -3.8274 -4.5157 19 8 0.0834 -2.1911 -3.4361 20 6 2.1729 -3.0226 -2.1171 21 6 1.5382 -2.1319 -1.0166 22 1 -0.3633 -1.0251 0.0708 23 1 -0.3633 0.5741 0.8525 24 1 -0.3634 0.4512 -0.9233 25 1 3.0798 1.3443 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 2.9875 4.9176 0.7773 28 1 0.6765 -0.4970 -2.8367 29 1 1.4349 1.0112 -2.2450 30 1 2.9828 0.6755 -3.8769 31 1 3.6125 -0.6112 -2.8206 32 1 3.2682 -1.7347 -4.8795 33 1 1.7670 -0.8487 -5.2180 34 1 2.0286 -4.0725 -1.8623 35 1 3.2396 -2.8091 -2.1856 36 1 0.4530 -2.1573 -1.1158 37 1 1.8182 -2.5181 -0.0365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694222956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:52 Heat of formation + Delta-G solvation = -79.037176 kcal Electronic energy + Delta-G solvation = -19016.297717 eV Core-core repulsion = 16113.545115 eV Total energy + Delta-G solvation = -2902.752602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61749 -37.94244 -37.05527 -36.01867 -34.61505 -33.71783 -29.74806 -29.04440 -26.95527 -26.19809 -23.22858 -23.05718 -20.66693 -19.56469 -18.64887 -17.89334 -17.63044 -16.83969 -16.65314 -16.17972 -15.67430 -15.44527 -15.02271 -14.59237 -14.47229 -14.18898 -14.04414 -13.57133 -13.26761 -13.19745 -13.07042 -13.01953 -12.74569 -12.62112 -12.45137 -12.21345 -12.04959 -11.90928 -11.78360 -11.38697 -11.34228 -11.17924 -11.01853 -10.56811 -8.89374 -8.17930 -6.26085 -0.90267 1.41230 1.42561 1.55228 1.92022 2.41737 2.74004 2.90742 3.15114 3.32160 3.52205 3.71211 3.84958 3.93589 4.11137 4.20574 4.42480 4.49495 4.56714 4.69261 4.71922 4.82183 4.84661 4.91566 5.10422 5.13829 5.18866 5.24709 5.31885 5.41464 5.55931 5.69842 6.11447 6.37674 6.70608 6.90989 7.43123 8.92679 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.045789 B = 0.005145 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.348779 B = 5441.375612 C = 5709.598252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.542 5.542 3 C 0.205 3.795 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.963 3.037 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.281 1.281 12 C 0.066 3.934 13 H 0.086 0.914 14 C -0.220 4.220 15 C -0.099 4.099 16 C -0.587 4.587 17 S 2.424 3.576 18 O -0.988 6.988 19 O -0.978 6.978 20 C -0.605 4.605 21 C -0.096 4.096 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.013 0.987 25 H 0.008 0.992 26 H -0.024 1.024 27 H 0.263 0.737 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.081 0.919 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 -12.736 -8.228 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.265 5.265 3 C 0.079 3.921 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.194 4.194 7 N -0.574 5.574 8 Si 0.789 3.211 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.207 1.207 12 C -0.043 4.043 13 H 0.104 0.896 14 C -0.259 4.259 15 C -0.137 4.137 16 C -0.719 4.719 17 S 2.612 3.388 18 O -0.986 6.986 19 O -0.975 6.975 20 C -0.737 4.737 21 C -0.134 4.134 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.026 0.974 26 H -0.006 1.006 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.181 0.819 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.099 0.901 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.937 -13.242 -8.166 15.586 hybrid contribution 0.163 1.749 0.220 1.770 sum 1.101 -11.493 -7.947 14.016 Atomic orbital electron populations 1.22285 0.88391 1.01338 0.99718 1.62413 1.07724 1.15598 1.40766 1.19433 0.93794 0.84044 0.94813 1.21566 1.34437 0.97465 1.02658 0.92221 1.25817 0.95186 0.98086 1.00355 1.70072 1.39558 1.11796 1.35942 0.85420 0.78007 0.78208 0.79488 1.18968 1.20441 1.20699 1.20837 1.00901 0.93849 0.88700 0.89593 1.23012 1.01246 1.03645 0.97955 1.21482 0.98324 0.99035 0.94908 1.30533 1.16368 1.14679 1.10274 1.07513 0.77197 0.76187 0.77909 1.93506 1.87564 1.49434 1.68054 1.93463 1.37470 1.81003 1.85558 1.30361 1.15415 1.10992 1.16931 1.20150 1.01537 0.92269 0.99485 0.90309 0.92809 0.96820 0.97411 1.00631 0.92827 0.87799 0.91514 0.89982 0.88251 0.81896 0.84112 0.81973 0.81634 0.90073 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 8.72 127.69 1.11 2.31 16 2 N -0.54 -22.00 4.68 -916.29 -4.29 -26.29 16 3 C 0.21 10.40 4.14 85.56 0.35 10.76 16 4 C -0.52 -29.05 8.46 25.60 0.22 -28.83 16 5 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 6 C 0.00 0.19 5.46 84.66 0.46 0.65 16 7 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 8 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.07 2.00 1.54 42.46 0.07 2.07 16 13 H 0.09 2.46 6.62 -2.39 -0.02 2.45 16 14 C -0.22 -6.61 3.89 30.12 0.12 -6.49 16 15 C -0.10 -2.10 5.59 30.55 0.17 -1.93 16 16 C -0.59 -9.38 6.48 72.50 0.47 -8.91 16 17 S 2.42 50.18 4.90 -56.49 -0.28 49.91 16 18 O -0.99 -25.98 18.05 -127.29 -2.30 -28.28 16 19 O -0.98 -28.26 14.10 -127.29 -1.80 -30.05 16 20 C -0.61 -9.77 5.83 72.72 0.42 -9.35 16 21 C -0.10 -2.32 4.21 28.78 0.12 -2.20 16 22 H 0.08 2.54 6.35 -2.39 -0.02 2.53 16 23 H 0.05 2.25 6.76 -2.38 -0.02 2.23 16 24 H 0.01 0.52 7.11 -2.39 -0.02 0.51 16 25 H 0.01 0.42 8.01 -2.39 -0.02 0.40 16 26 H -0.02 -1.30 6.19 -2.39 -0.01 -1.31 16 27 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 28 H 0.10 3.10 4.47 -2.39 -0.01 3.09 16 29 H 0.07 2.52 5.49 -2.39 -0.01 2.51 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 1.73 6.41 -2.39 -0.02 1.71 16 32 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.16 1.94 8.14 -2.51 -0.02 1.92 16 35 H 0.17 1.63 7.68 -2.50 -0.02 1.61 16 36 H 0.08 2.12 5.39 -2.38 -0.01 2.11 16 37 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -73.55 286.84 -1.77 -75.32 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.06 Total: 10.03 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 3.52 Total: -41.92 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -4.01 Total: -80.91 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -4.09 Total: -58.33 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 50.18 SS G_CDS: -0.28 Total: 49.91 kcal Total: -73.55 -1.77 -75.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694222956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.719 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds