Wall clock time and date at job start Mon Mar 30 2020 04:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 O 1.42896 * 109.47417 * 59.99790 * 9 7 2 12 12 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47515 * 179.97438 * 12 9 7 14 14 C 1.46796 * 111.00240 * 294.21291 * 13 12 9 15 15 C 1.53005 * 109.87456 * 171.09475 * 14 13 12 16 16 C 1.53330 * 109.19582 * 62.27821 * 15 14 13 17 17 C 1.53237 * 108.50456 * 305.68363 * 16 15 14 18 18 C 1.52791 * 117.74228 * 266.12951 * 17 16 15 19 19 C 1.52762 * 117.78915 * 197.17946 * 17 16 15 20 20 F 1.39901 * 117.50432 * 215.17416 * 19 17 16 21 21 F 1.39898 * 117.50635 * 0.22389 * 19 17 16 22 22 C 1.47051 * 111.00458 * 170.00013 * 13 12 9 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 0.96708 * 114.00101 * 59.99427 * 11 9 7 25 25 H 1.09002 * 109.47153 * 299.99998 * 12 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 12 9 7 27 27 H 1.08996 * 109.39846 * 291.22112 * 14 13 12 28 28 H 1.09004 * 109.40201 * 50.97130 * 14 13 12 29 29 H 1.08999 * 109.51199 * 302.36370 * 15 14 13 30 30 H 1.08999 * 109.55948 * 182.22054 * 15 14 13 31 31 H 1.09001 * 109.63245 * 185.98392 * 16 15 14 32 32 H 1.09000 * 109.63113 * 65.39058 * 16 15 14 33 33 H 1.09006 * 117.50493 * 359.69383 * 18 17 16 34 34 H 1.08994 * 117.50630 * 144.74998 * 18 17 16 35 35 H 1.09002 * 109.56264 * 302.02219 * 22 13 12 36 36 H 1.08994 * 109.56368 * 62.37025 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5106 -4.9343 0.0012 14 6 0.7612 -5.1085 1.2513 15 6 -0.1630 -6.3227 1.1388 16 6 0.6841 -7.5833 0.9283 17 6 1.5973 -7.3591 -0.2816 18 6 1.1040 -7.8428 -1.6444 19 6 2.2347 -8.5867 -0.9300 20 9 3.5274 -8.4468 -1.4463 21 9 1.9374 -9.8370 -0.3773 22 6 2.4178 -6.0668 -0.2372 23 1 -0.4850 0.8401 0.0004 24 1 0.9222 -2.5299 -1.9976 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.4599 -5.2602 2.0741 28 1 0.1653 -4.2163 1.4437 29 1 -0.8361 -6.1906 0.2918 30 1 -0.7454 -6.4240 2.0546 31 1 0.0314 -8.4361 0.7414 32 1 1.2900 -7.7696 1.8150 33 1 0.1284 -8.3276 -1.6836 34 1 1.3673 -7.2445 -2.5165 35 1 2.9324 -5.9283 -1.1881 36 1 3.1480 -6.1256 0.5698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930862027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:16 Heat of formation + Delta-G solvation = -119.965428 kcal Electronic energy + Delta-G solvation = -20387.412318 eV Core-core repulsion = 16929.044548 eV Total energy + Delta-G solvation = -3458.367771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.128 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.67740 -47.35208 -39.21607 -36.35753 -34.53438 -32.30575 -32.05700 -28.65869 -27.39988 -25.30458 -22.93455 -22.79838 -21.95543 -20.00729 -18.86985 -17.62988 -17.13582 -16.54416 -15.96463 -14.93466 -14.73978 -14.62966 -14.44235 -14.12111 -14.01786 -13.82329 -13.62412 -13.47982 -13.19745 -12.80530 -12.59382 -12.43668 -12.11919 -11.24797 -11.06617 -10.96248 -10.87438 -10.80164 -10.62849 -10.35716 -10.33585 -10.06778 -9.64647 -8.97538 -8.57559 -8.11981 -7.69521 -6.01935 -4.20214 2.95488 3.08942 3.25687 3.34227 3.37306 4.14825 4.21977 4.34214 4.46923 4.66717 4.82216 5.12499 5.25450 5.26710 5.43540 5.49671 5.60191 5.71928 5.74096 5.82615 5.84633 5.95473 5.97507 6.10804 6.26284 6.42374 6.44483 6.56352 6.78839 7.48776 7.55237 7.76422 7.86050 8.18796 8.83943 9.45391 9.61504 11.02204 Molecular weight = 261.13amu Principal moments of inertia in cm(-1) A = 0.039441 B = 0.004613 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.757723 B = 6068.451409 C = 6376.614815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.575 4.575 8 H 0.055 0.945 9 C 0.238 3.762 10 H 0.055 0.945 11 O -0.553 6.553 12 C 0.031 3.969 13 N -0.520 5.520 14 C 0.052 3.948 15 C -0.110 4.110 16 C -0.085 4.085 17 C -0.105 4.105 18 C -0.153 4.153 19 C 0.187 3.813 20 F -0.163 7.163 21 F -0.165 7.165 22 C 0.088 3.912 23 H 0.260 0.740 24 H 0.342 0.658 25 H 0.064 0.936 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 -15.249 -0.121 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.180 3.820 10 H 0.073 0.927 11 O -0.355 6.355 12 C -0.097 4.097 13 N -0.244 5.244 14 C -0.076 4.076 15 C -0.148 4.148 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.191 4.191 19 C 0.149 3.851 20 F -0.144 7.144 21 F -0.145 7.145 22 C -0.040 4.040 23 H 0.070 0.930 24 H 0.185 0.815 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.098 0.902 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.916 -15.199 -0.031 15.227 hybrid contribution 1.859 0.726 0.278 2.015 sum 2.775 -14.473 0.247 14.739 Atomic orbital electron populations 1.70088 1.05906 1.26304 1.47100 1.25010 0.94670 0.99060 0.93826 0.86634 0.80218 0.83910 0.77708 1.19751 1.20846 1.20904 1.21695 0.93196 0.91615 1.54814 0.92695 1.19326 0.87747 0.88407 0.86545 0.92732 1.86559 1.37699 1.96284 1.14958 1.23104 0.97374 0.89479 0.99693 1.61960 1.26401 1.01214 1.34855 1.22109 0.96501 0.99127 0.89883 1.21560 0.97833 0.93038 1.02371 1.21252 0.96932 0.98995 0.95049 1.22874 0.98928 0.92787 0.96066 1.24366 0.97282 0.99794 0.97654 1.20351 0.80546 0.80981 1.03183 1.93002 1.38717 1.95517 1.87138 1.92986 1.92679 1.42852 1.86003 1.21635 0.92814 0.88097 1.01435 0.93042 0.81454 0.91722 0.95455 0.95709 0.89229 0.90495 0.91286 0.91115 0.91176 0.86263 0.85794 0.90198 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.04 12.84 55.43 0.71 -24.33 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.57 -15.48 8.76 -34.44 -0.30 -15.78 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 5.84 2.71 -27.88 -0.08 5.77 16 10 H 0.06 1.47 6.37 -51.93 -0.33 1.14 16 11 O -0.55 -14.03 12.60 -35.23 -0.44 -14.47 16 12 C 0.03 0.61 4.56 -3.83 -0.02 0.60 16 13 N -0.52 -8.99 4.53 -234.50 -1.06 -10.06 16 14 C 0.05 0.84 5.24 -3.88 -0.02 0.82 16 15 C -0.11 -1.44 6.11 -26.56 -0.16 -1.60 16 16 C -0.08 -1.00 5.43 -26.44 -0.14 -1.14 16 17 C -0.10 -1.34 2.11 -154.54 -0.33 -1.66 16 18 C -0.15 -1.71 9.89 -26.82 -0.27 -1.98 16 19 C 0.19 2.34 5.15 -26.83 -0.14 2.20 16 20 F -0.16 -2.24 17.07 2.25 0.04 -2.20 16 21 F -0.16 -2.13 17.09 2.25 0.04 -2.09 16 22 C 0.09 1.30 4.89 -3.67 -0.02 1.28 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.34 7.83 9.04 45.56 0.41 8.24 16 25 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 26 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 27 H 0.02 0.39 8.13 -51.93 -0.42 -0.04 16 28 H 0.09 1.67 6.09 -51.93 -0.32 1.36 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.74 8.00 -51.93 -0.42 0.32 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 301.86 15.07 4.55 4.55 Total: -1.00 -29.53 301.86 -7.15 -36.68 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.40 Total: 5.41 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.56 Total: -9.37 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.35 Total: -34.38 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.44 Total: -14.47 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.08 Total: -4.29 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.53 -7.15 -36.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930862027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.282 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds