Wall clock time and date at job start Mon Mar 30 2020 04:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 O 1.42896 * 109.47417 * 59.99790 * 9 7 2 12 12 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47515 * 179.97438 * 12 9 7 14 14 C 1.46796 * 111.00240 * 294.21291 * 13 12 9 15 15 C 1.53005 * 109.87456 * 171.09475 * 14 13 12 16 16 C 1.53330 * 109.19582 * 62.27821 * 15 14 13 17 17 C 1.53237 * 108.50456 * 305.68363 * 16 15 14 18 18 C 1.52791 * 117.74228 * 266.12951 * 17 16 15 19 19 C 1.52762 * 117.78915 * 197.17946 * 17 16 15 20 20 F 1.39901 * 117.50432 * 215.17416 * 19 17 16 21 21 F 1.39898 * 117.50635 * 0.22389 * 19 17 16 22 22 C 1.47051 * 111.00458 * 170.00013 * 13 12 9 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 0.96708 * 114.00101 * 59.99427 * 11 9 7 25 25 H 1.09002 * 109.47153 * 299.99998 * 12 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 12 9 7 27 27 H 1.08996 * 109.39846 * 291.22112 * 14 13 12 28 28 H 1.09004 * 109.40201 * 50.97130 * 14 13 12 29 29 H 1.08999 * 109.51199 * 302.36370 * 15 14 13 30 30 H 1.08999 * 109.55948 * 182.22054 * 15 14 13 31 31 H 1.09001 * 109.63245 * 185.98392 * 16 15 14 32 32 H 1.09000 * 109.63113 * 65.39058 * 16 15 14 33 33 H 1.09006 * 117.50493 * 359.69383 * 18 17 16 34 34 H 1.08994 * 117.50630 * 144.74998 * 18 17 16 35 35 H 1.09002 * 109.56264 * 302.02219 * 22 13 12 36 36 H 1.08994 * 109.56368 * 62.37025 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5106 -4.9343 0.0012 14 6 0.7612 -5.1085 1.2513 15 6 -0.1630 -6.3227 1.1388 16 6 0.6841 -7.5833 0.9283 17 6 1.5973 -7.3591 -0.2816 18 6 1.1040 -7.8428 -1.6444 19 6 2.2347 -8.5867 -0.9300 20 9 3.5274 -8.4468 -1.4463 21 9 1.9374 -9.8370 -0.3773 22 6 2.4178 -6.0668 -0.2372 23 1 -0.4850 0.8401 0.0004 24 1 0.9222 -2.5299 -1.9976 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.4599 -5.2602 2.0741 28 1 0.1653 -4.2163 1.4437 29 1 -0.8361 -6.1906 0.2918 30 1 -0.7454 -6.4240 2.0546 31 1 0.0314 -8.4361 0.7414 32 1 1.2900 -7.7696 1.8150 33 1 0.1284 -8.3276 -1.6836 34 1 1.3673 -7.2445 -2.5165 35 1 2.9324 -5.9283 -1.1881 36 1 3.1480 -6.1256 0.5698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930862027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:16 Heat of formation + Delta-G solvation = -140.223127 kcal Electronic energy + Delta-G solvation = -20388.290758 eV Core-core repulsion = 16929.044548 eV Total energy + Delta-G solvation = -3459.246210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.67230 -48.35374 -40.40889 -37.96146 -36.02994 -34.20070 -33.46640 -30.35474 -28.64023 -27.02147 -24.42505 -23.80810 -23.18854 -21.62645 -19.94702 -19.07959 -18.60626 -17.72369 -16.98598 -16.66218 -16.41504 -16.09744 -16.03613 -15.34116 -15.24988 -15.02166 -14.80997 -14.62818 -14.49826 -14.32262 -13.92361 -13.59775 -13.29967 -13.05237 -12.85031 -12.75678 -12.47882 -12.07574 -11.99008 -11.96019 -11.50202 -11.34024 -10.99758 -10.70121 -10.59141 -10.05817 -9.13309 -8.12222 -6.37722 1.40196 1.42067 1.53530 1.94448 2.15319 2.39734 3.03355 3.14510 3.26365 3.31001 3.65009 3.78127 4.06720 4.15359 4.24293 4.33565 4.46550 4.52039 4.56182 4.66207 4.70027 4.72123 4.81995 4.89184 4.94949 5.01747 5.05564 5.19742 5.39491 5.62768 5.77371 6.01405 6.20514 6.25832 6.75876 7.36820 7.65568 8.92313 Molecular weight = 261.13amu Principal moments of inertia in cm(-1) A = 0.039441 B = 0.004613 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.757723 B = 6068.451409 C = 6376.614815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.240 3.760 10 H 0.023 0.977 11 O -0.568 6.568 12 C 0.047 3.953 13 N -0.526 5.526 14 C 0.050 3.950 15 C -0.102 4.102 16 C -0.079 4.079 17 C -0.116 4.116 18 C -0.139 4.139 19 C 0.185 3.815 20 F -0.172 7.172 21 F -0.166 7.166 22 C 0.090 3.910 23 H 0.261 0.739 24 H 0.352 0.648 25 H 0.070 0.930 26 H 0.023 0.977 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -16.238 -0.399 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.627 4.627 8 H 0.075 0.925 9 C 0.182 3.818 10 H 0.041 0.959 11 O -0.371 6.371 12 C -0.081 4.081 13 N -0.251 5.251 14 C -0.078 4.078 15 C -0.139 4.139 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.176 4.176 19 C 0.148 3.852 20 F -0.153 7.153 21 F -0.146 7.146 22 C -0.038 4.038 23 H 0.070 0.930 24 H 0.196 0.804 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.427 -16.207 -0.310 16.272 hybrid contribution 1.704 1.000 0.373 2.011 sum 3.131 -15.206 0.063 15.525 Atomic orbital electron populations 1.70219 1.07587 1.27248 1.48482 1.25844 0.95432 1.02728 0.93398 0.85544 0.79126 0.79381 0.77706 1.18866 1.20462 1.20543 1.22093 0.93500 0.92922 1.54196 0.92467 1.19156 0.87727 0.89712 0.85229 0.95898 1.86503 1.38526 1.96416 1.15636 1.22699 0.96032 0.89578 0.99742 1.61880 1.26716 1.00954 1.35509 1.22120 0.96677 0.99334 0.89671 1.21495 0.97258 0.92144 1.03048 1.21246 0.96836 0.98717 0.94836 1.22856 0.99409 0.91825 0.97657 1.24506 0.97697 0.98715 0.96725 1.20410 0.80580 0.80698 1.03529 1.92984 1.39517 1.95553 1.87245 1.92985 1.92638 1.42887 1.86115 1.21620 0.92698 0.88062 1.01394 0.93002 0.80380 0.91160 0.95835 0.95255 0.92550 0.91327 0.89352 0.89006 0.90688 0.84069 0.85416 0.90074 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.27 12.84 21.45 0.28 -53.00 16 2 C 0.03 1.58 5.40 84.66 0.46 2.04 16 3 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.59 -31.99 8.76 25.60 0.22 -31.76 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.24 12.04 2.71 29.85 0.08 12.13 16 10 H 0.02 1.31 6.37 -2.39 -0.02 1.29 16 11 O -0.57 -29.28 12.60 -148.98 -1.88 -31.16 16 12 C 0.05 1.90 4.56 86.30 0.39 2.30 16 13 N -0.53 -18.01 4.53 -895.82 -4.06 -22.07 16 14 C 0.05 1.62 5.24 86.32 0.45 2.07 16 15 C -0.10 -2.50 6.11 30.71 0.19 -2.31 16 16 C -0.08 -1.65 5.43 30.78 0.17 -1.48 16 17 C -0.12 -2.70 2.11 -52.20 -0.11 -2.81 16 18 C -0.14 -2.72 9.89 30.54 0.30 -2.42 16 19 C 0.18 4.21 5.15 30.53 0.16 4.36 16 20 F -0.17 -4.43 17.07 44.97 0.77 -3.67 16 21 F -0.17 -3.85 17.09 44.97 0.77 -3.08 16 22 C 0.09 2.54 4.89 86.32 0.42 2.96 16 23 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 24 H 0.35 16.23 9.04 -74.05 -0.67 15.56 16 25 H 0.07 2.71 8.04 -2.39 -0.02 2.69 16 26 H 0.02 0.95 8.12 -2.39 -0.02 0.93 16 27 H 0.03 0.91 8.13 -2.39 -0.02 0.89 16 28 H 0.06 2.20 6.09 -2.39 -0.01 2.18 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 1.58 8.00 -2.39 -0.02 1.56 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.08 2.25 7.92 -2.39 -0.02 2.23 16 36 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -63.02 301.86 1.06 -61.96 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.42 Total: 20.96 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 2.73 Total: -14.93 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -3.78 Total: -75.06 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.88 Total: -31.16 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 1.54 Total: -6.75 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -63.02 1.06 -61.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930862027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.260 kcal (2) G-P(sol) polarization free energy of solvation -63.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds