Wall clock time and date at job start Mon Mar 30 2020 04:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37104 * 120.00217 * 2 1 4 4 H 1.07997 * 119.99909 * 205.15110 * 3 2 1 5 5 C 1.38949 * 119.99716 * 25.15248 * 3 2 1 6 6 N 1.31414 * 119.99928 * 11.73943 * 5 3 2 7 7 Si 1.86798 * 119.99958 * 191.74233 * 5 3 2 8 8 H 1.48495 * 109.47190 * 89.99832 * 7 5 3 9 9 H 1.48499 * 109.47372 * 210.00117 * 7 5 3 10 10 H 1.48499 * 109.47125 * 329.99829 * 7 5 3 11 11 C 1.34779 * 119.99841 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99591 * 179.72257 * 11 2 1 13 13 C 1.50698 * 119.99878 * 359.97438 * 11 2 1 14 14 H 1.08996 * 110.21315 * 40.43091 * 13 11 2 15 15 C 1.51273 * 110.24586 * 278.49994 * 13 11 2 16 16 C 1.33226 * 105.98302 * 240.99929 * 15 13 11 17 17 Cl 1.73601 * 125.27797 * 180.02562 * 16 15 13 18 18 C 1.46558 * 109.43809 * 0.02562 * 16 15 13 19 19 Cl 1.73609 * 124.49474 * 179.97438 * 18 16 15 20 20 N 1.29476 * 111.02996 * 359.95266 * 18 16 15 21 21 H 1.09003 * 109.46749 * 265.06054 * 1 2 3 22 22 H 1.09004 * 109.47168 * 25.05592 * 1 2 3 23 23 H 1.08998 * 109.47579 * 145.05900 * 1 2 3 24 24 H 0.97005 * 119.99809 * 180.02562 * 6 5 3 25 25 H 1.07998 * 127.00248 * 60.98371 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1537 1.2316 -0.3975 5 6 1.5546 2.3336 0.5115 6 7 0.4388 2.2429 1.1997 7 14 2.3395 4.0036 0.2207 8 1 1.8079 4.5882 -1.0366 9 1 2.0227 4.9042 1.3581 10 1 3.8119 3.8459 0.1095 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0056 13 6 1.3853 -2.4723 -0.0005 14 1 0.5225 -2.4089 -0.6635 15 6 0.9424 -2.8210 1.4032 16 6 1.5306 -3.9800 1.6962 17 17 1.3619 -4.8392 3.1952 18 6 2.3421 -4.4169 0.5567 19 17 3.2773 -5.8790 0.5187 20 7 2.2689 -3.5682 -0.4184 21 1 -0.3633 -0.0885 1.0239 22 1 -0.3634 0.9310 -0.4352 23 1 -0.3634 -0.8424 -0.5885 24 1 0.0225 3.0432 1.5565 25 1 0.2839 -2.2473 2.0385 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725540103.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:54 Heat of formation + Delta-G solvation = 20.719563 kcal Electronic energy + Delta-G solvation = -15234.199239 eV Core-core repulsion = 12301.512678 eV Total energy + Delta-G solvation = -2932.686561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 262.002 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38961 -37.91698 -36.63395 -36.44097 -34.83224 -31.89770 -30.35520 -28.65275 -26.35748 -24.60489 -21.80065 -20.01391 -19.00143 -17.12734 -16.90916 -16.55575 -14.91123 -14.53657 -14.35065 -13.89210 -13.61658 -13.52900 -12.56201 -12.38762 -12.11589 -11.78737 -11.56631 -11.43777 -11.34234 -11.23149 -10.98195 -10.47880 -10.42608 -10.20416 -10.06082 -9.17465 -9.12031 -8.56750 -7.86963 -6.49504 -4.07259 0.92468 1.66943 1.99376 2.47333 3.07304 3.18221 3.23622 3.56236 3.96033 4.11817 4.60134 4.74006 5.01077 5.13246 5.44183 5.56585 5.61715 5.97803 6.11633 6.62738 6.98930 7.00463 7.41947 7.93139 8.28065 8.97644 9.17605 9.71425 10.55203 Molecular weight = 262.00amu Principal moments of inertia in cm(-1) A = 0.034461 B = 0.005548 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.321613 B = 5045.851680 C = 5422.950761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.433 5.433 3 C -0.308 4.308 4 H 0.101 0.899 5 C 0.035 3.965 6 N -0.878 5.878 7 Si 0.930 3.070 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.472 3.528 12 O -0.560 6.560 13 C 0.035 3.965 14 H 0.153 0.847 15 C -0.092 4.092 16 C -0.102 4.102 17 Cl -0.037 7.037 18 C 0.208 3.792 19 Cl -0.004 7.004 20 N -0.412 5.412 21 H 0.056 0.944 22 H 0.082 0.918 23 H 0.026 0.974 24 H 0.271 0.729 25 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 -10.380 1.548 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.152 5.152 3 C -0.435 4.435 4 H 0.119 0.881 5 C -0.170 4.170 6 N -0.516 5.516 7 Si 0.757 3.243 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.257 3.743 12 O -0.442 6.442 13 C -0.079 4.079 14 H 0.170 0.830 15 C -0.118 4.118 16 C -0.133 4.133 17 Cl -0.008 7.008 18 C -0.005 4.005 19 Cl 0.025 6.975 20 N -0.123 5.123 21 H 0.075 0.925 22 H 0.101 0.899 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.095 -10.154 0.704 10.639 hybrid contribution -0.243 0.627 0.918 1.137 sum -3.338 -9.527 1.621 10.225 Atomic orbital electron populations 1.21650 0.80965 1.00586 1.00775 1.43508 1.05597 1.04074 1.61977 1.19700 1.01360 0.83603 1.38874 0.88131 1.25392 0.96539 1.00339 0.94687 1.69963 1.18946 1.30147 1.32590 0.85849 0.79808 0.80733 0.77938 1.20157 1.20772 1.19193 1.18792 0.87442 0.82476 0.85631 1.90591 1.13145 1.85422 1.55056 1.22162 0.97275 0.94582 0.93908 0.82995 1.24699 0.96756 0.93132 0.97231 1.22735 1.03851 0.97052 0.89641 1.98355 1.96615 1.76325 1.29503 1.24518 0.93906 0.90882 0.91195 1.98396 1.70359 1.30546 1.98224 1.74664 1.11970 1.00624 1.25083 0.92512 0.89940 0.95525 0.91926 0.80504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.09 8.29 59.85 0.50 2.59 15 2 N -0.43 -10.52 3.01 -122.19 -0.37 -10.89 15 3 C -0.31 -8.23 9.23 -14.93 -0.14 -8.37 15 4 H 0.10 2.85 7.45 -52.49 -0.39 2.46 15 5 C 0.03 0.87 5.06 -17.47 -0.09 0.78 15 6 N -0.88 -21.97 10.83 55.50 0.60 -21.37 15 7 Si 0.93 19.94 29.57 -169.99 -5.03 14.92 15 8 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 10 H -0.27 -5.84 7.11 56.52 0.40 -5.43 15 11 C 0.47 11.33 6.94 -10.99 -0.08 11.25 15 12 O -0.56 -15.84 16.29 5.54 0.09 -15.75 15 13 C 0.03 0.66 3.21 -69.77 -0.22 0.43 15 14 H 0.15 2.43 6.42 -51.93 -0.33 2.10 15 15 C -0.09 -1.49 10.33 -35.78 -0.37 -1.86 15 16 C -0.10 -1.62 6.73 -37.98 -0.26 -1.88 15 17 Cl -0.04 -0.50 29.21 -51.86 -1.51 -2.01 15 18 C 0.21 3.58 7.82 -15.19 -0.12 3.46 15 19 Cl 0.00 -0.05 29.25 -51.86 -1.52 -1.57 15 20 N -0.41 -8.04 11.02 -51.53 -0.57 -8.61 15 21 H 0.06 1.13 7.85 -51.93 -0.41 0.72 15 22 H 0.08 1.78 6.78 -51.93 -0.35 1.43 15 23 H 0.03 0.43 6.18 -51.93 -0.32 0.11 15 24 H 0.27 6.42 8.31 -40.82 -0.34 6.08 15 25 H 0.18 2.50 8.06 -52.49 -0.42 2.07 15 LS Contribution 259.15 15.07 3.91 3.91 Total: -1.00 -29.84 259.15 -6.53 -36.37 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -1.36 Total: -1.41 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -0.77 Total: 6.40 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -0.33 Total: -40.86 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.09 Total: -15.75 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -3.03 Total: -3.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.84 -6.53 -36.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725540103.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.090 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds