Wall clock time and date at job start Mon Mar 30 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33527 * 120.04208 * 2 1 4 4 C 1.51051 * 114.10589 * 180.25192 * 3 2 1 5 5 H 1.09002 * 110.57527 * 241.18976 * 4 3 2 6 6 C 1.53004 * 110.57470 * 118.31169 * 4 3 2 7 7 S 1.82310 * 103.71423 * 359.75200 * 4 3 2 8 8 C 1.37340 * 120.03800 * 179.76818 * 2 1 3 9 9 S 1.55345 * 126.20994 * 0.04227 * 8 2 1 10 10 O 1.52206 * 109.47155 * 59.70949 * 9 8 2 11 11 O 1.42103 * 109.47211 * 299.71234 * 9 8 2 12 12 N 1.65594 * 109.47313 * 179.70973 * 9 8 2 13 13 C 1.36935 * 120.00280 * 179.97438 * 12 9 8 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 9 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 9 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46685 * 269.99637 * 17 15 13 19 19 H 1.48494 * 109.47357 * 29.99716 * 17 15 13 20 20 H 1.48502 * 109.47120 * 150.00435 * 17 15 13 21 21 H 1.08997 * 109.46713 * 270.23131 * 1 2 3 22 22 H 1.08999 * 109.46492 * 30.22879 * 1 2 3 23 23 H 1.09001 * 109.46908 * 150.23150 * 1 2 3 24 24 H 1.07995 * 122.94285 * 359.96879 * 3 2 1 25 25 H 1.09006 * 109.46917 * 304.25009 * 6 4 3 26 26 H 1.08998 * 109.47191 * 64.25364 * 6 4 3 27 27 H 1.09004 * 109.46979 * 184.25429 * 6 4 3 28 28 H 0.96702 * 113.99613 * 60.00408 * 10 9 8 29 29 H 0.97000 * 120.00418 * 0.02562 * 12 9 8 30 30 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1559 0.0000 4 6 3.6779 0.9997 -0.0061 5 1 4.1132 1.4472 0.8874 6 6 4.2782 1.6226 -1.2681 7 16 3.9246 -0.8066 -0.0033 8 6 2.1945 -1.1889 0.0048 9 16 1.5688 -2.6108 0.0096 10 8 0.7027 -2.7882 -1.2294 11 8 0.7695 -2.7726 1.1733 12 7 2.7754 -3.7449 0.0067 13 6 2.4622 -5.0779 0.0106 14 1 1.4282 -5.3897 0.0153 15 6 3.4737 -6.0287 0.0087 16 7 4.7339 -5.6487 0.0035 17 14 3.0463 -7.8471 0.0134 18 1 2.9382 -8.3265 1.4148 19 1 1.7503 -8.0529 -0.6816 20 1 4.1110 -8.6076 -0.6891 21 1 -0.3633 0.0041 1.0277 22 1 -0.3632 0.8879 -0.5174 23 1 -0.3633 -0.8921 -0.5102 24 1 1.6849 2.1180 -0.0005 25 1 3.8125 1.1798 -2.1486 26 1 4.0982 2.6976 -1.2636 27 1 5.3515 1.4340 -1.2911 28 1 1.1838 -2.6910 -2.0626 29 1 3.7042 -3.4650 0.0029 30 1 4.9557 -4.7045 0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725558924.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:49 Heat of formation + Delta-G solvation = -54.753643 kcal Electronic energy + Delta-G solvation = -16323.365654 eV Core-core repulsion = 13565.441269 eV Total energy + Delta-G solvation = -2757.924386 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 263.044 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -37.26110 -36.73568 -35.72492 -35.32530 -32.15348 -31.37423 -27.56422 -26.35838 -24.84830 -21.61985 -20.23549 -19.63517 -18.09994 -18.01268 -16.65233 -15.63544 -15.42372 -14.67198 -14.31153 -14.13628 -13.67693 -13.04093 -12.94656 -12.67914 -12.34627 -12.08054 -11.95941 -11.74380 -11.54607 -11.14994 -11.10543 -10.65954 -10.59297 -10.56084 -10.37460 -10.29168 -9.85370 -9.40253 -8.92195 -7.57220 -7.48760 -5.82800 -4.51090 0.80803 2.61075 3.01324 3.05301 3.06756 3.19503 3.20731 3.70005 3.91402 4.30108 4.47864 5.30675 5.48423 5.66665 5.72289 5.78097 5.94271 6.04796 6.19562 6.25588 6.28873 6.45197 6.52346 6.57571 6.73117 7.31867 7.34143 7.56121 7.77345 8.20353 8.30778 9.84590 Molecular weight = 263.04amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.007388 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.531061 B = 3788.933195 C = 4453.054894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.085 3.915 3 C -0.334 4.334 4 C 0.014 3.986 5 H 0.074 0.926 6 C -0.128 4.128 7 S -0.147 6.147 8 C -1.140 5.140 9 S 2.608 3.392 10 O -0.913 6.913 11 O -0.937 6.937 12 N -0.926 5.926 13 C -0.293 4.293 14 H 0.116 0.884 15 C 0.001 3.999 16 N -0.811 5.811 17 Si 1.090 2.910 18 H -0.272 1.272 19 H -0.274 1.274 20 H -0.271 1.271 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.112 0.888 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.440 0.560 29 H 0.402 0.598 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 2.377 -4.645 5.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.081 3.919 3 C -0.355 4.355 4 C -0.115 4.115 5 H 0.092 0.908 6 C -0.187 4.187 7 S 0.080 5.920 8 C -1.353 5.353 9 S 2.739 3.261 10 O -0.764 6.764 11 O -0.927 6.927 12 N -0.675 5.675 13 C -0.449 4.449 14 H 0.134 0.866 15 C -0.215 4.215 16 N -0.450 5.450 17 Si 0.912 3.088 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.195 1.195 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.305 0.695 29 H 0.239 0.761 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.902 0.264 -4.116 4.542 hybrid contribution -0.541 3.535 -0.465 3.606 sum -2.442 3.799 -4.582 6.433 Atomic orbital electron populations 1.21042 0.93643 1.01934 1.02471 1.16808 0.93093 0.90329 0.91629 1.22353 0.91757 0.96422 1.24995 1.21944 0.97440 0.92881 0.99249 0.90839 1.21887 0.99653 0.99641 0.97551 1.84454 1.02017 1.07457 1.98049 1.29729 1.08308 1.21755 1.75475 1.10418 0.70119 0.69222 0.76293 1.85831 1.64049 1.92600 1.33885 1.93308 1.67809 1.86462 1.45098 1.52896 1.20641 1.16504 1.77482 1.21081 0.98074 0.81345 1.44442 0.86623 1.27193 0.91953 1.07803 0.94513 1.70848 1.17960 1.20784 1.35423 0.83161 0.76425 0.70699 0.78499 1.19740 1.19928 1.19549 0.90966 0.91786 0.92330 0.87025 0.92250 0.92890 0.93193 0.69550 0.76146 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.43 36.01 0.34 -2.19 16 2 C 0.08 1.83 5.69 -106.60 -0.61 1.22 16 3 C -0.33 -6.82 9.67 -35.79 -0.35 -7.17 16 4 C 0.01 0.27 3.91 -27.71 -0.11 0.16 16 5 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 6 C -0.13 -2.06 9.34 37.16 0.35 -1.71 16 7 S -0.15 -3.10 21.43 -106.86 -2.29 -5.39 16 8 C -1.14 -24.95 5.80 30.41 0.18 -24.77 16 9 S 2.61 54.88 3.73 -106.86 -0.40 54.48 16 10 O -0.91 -16.11 12.11 -58.38 -0.71 -16.81 16 11 O -0.94 -23.78 17.78 -58.38 -1.04 -24.82 16 12 N -0.93 -19.72 5.74 31.50 0.18 -19.53 16 13 C -0.29 -6.39 9.94 -15.06 -0.15 -6.54 16 14 H 0.12 2.38 7.82 -52.49 -0.41 1.97 16 15 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 16 N -0.81 -18.93 13.70 55.49 0.76 -18.17 16 17 Si 1.09 18.63 29.92 -169.99 -5.09 13.54 16 18 H -0.27 -4.59 7.11 56.52 0.40 -4.18 16 19 H -0.27 -4.32 7.11 56.52 0.40 -3.91 16 20 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 21 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 22 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 23 H 0.06 1.10 6.05 -51.93 -0.31 0.79 16 24 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.44 5.47 9.03 67.38 0.61 6.08 16 29 H 0.40 8.53 5.54 -34.47 -0.19 8.34 16 30 H 0.28 6.55 6.77 -40.82 -0.28 6.28 16 LS Contribution 277.07 15.07 4.18 4.18 Total: -1.00 -29.88 277.07 -7.18 -37.06 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -2.33 Total: 16.54 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: -0.44 Total: -41.07 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.94 Total: -37.70 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.74 Total: -41.63 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.09 Total: 13.54 kcal Atomic # 16 Polarization: 51.78 SS G_CDS: -2.69 Total: 49.09 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.88 -7.18 -37.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725558924.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.690 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds