Wall clock time and date at job start Mon Mar 30 2020 04:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33527 * 120.04208 * 2 1 4 4 C 1.51051 * 114.10589 * 180.25192 * 3 2 1 5 5 H 1.09002 * 110.57527 * 241.18976 * 4 3 2 6 6 C 1.53004 * 110.57470 * 118.31169 * 4 3 2 7 7 S 1.82310 * 103.71423 * 359.75200 * 4 3 2 8 8 C 1.37340 * 120.03800 * 179.76818 * 2 1 3 9 9 S 1.55345 * 126.20994 * 0.04227 * 8 2 1 10 10 O 1.52206 * 109.47155 * 59.70949 * 9 8 2 11 11 O 1.42103 * 109.47211 * 299.71234 * 9 8 2 12 12 N 1.65594 * 109.47313 * 179.70973 * 9 8 2 13 13 C 1.36935 * 120.00280 * 179.97438 * 12 9 8 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 9 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 9 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46685 * 269.99637 * 17 15 13 19 19 H 1.48494 * 109.47357 * 29.99716 * 17 15 13 20 20 H 1.48502 * 109.47120 * 150.00435 * 17 15 13 21 21 H 1.08997 * 109.46713 * 270.23131 * 1 2 3 22 22 H 1.08999 * 109.46492 * 30.22879 * 1 2 3 23 23 H 1.09001 * 109.46908 * 150.23150 * 1 2 3 24 24 H 1.07995 * 122.94285 * 359.96879 * 3 2 1 25 25 H 1.09006 * 109.46917 * 304.25009 * 6 4 3 26 26 H 1.08998 * 109.47191 * 64.25364 * 6 4 3 27 27 H 1.09004 * 109.46979 * 184.25429 * 6 4 3 28 28 H 0.96702 * 113.99613 * 60.00408 * 10 9 8 29 29 H 0.97000 * 120.00418 * 0.02562 * 12 9 8 30 30 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1559 0.0000 4 6 3.6779 0.9997 -0.0061 5 1 4.1132 1.4472 0.8874 6 6 4.2782 1.6226 -1.2681 7 16 3.9246 -0.8066 -0.0033 8 6 2.1945 -1.1889 0.0048 9 16 1.5688 -2.6108 0.0096 10 8 0.7027 -2.7882 -1.2294 11 8 0.7695 -2.7726 1.1733 12 7 2.7754 -3.7449 0.0067 13 6 2.4622 -5.0779 0.0106 14 1 1.4282 -5.3897 0.0153 15 6 3.4737 -6.0287 0.0087 16 7 4.7339 -5.6487 0.0035 17 14 3.0463 -7.8471 0.0134 18 1 2.9382 -8.3265 1.4148 19 1 1.7503 -8.0529 -0.6816 20 1 4.1110 -8.6076 -0.6891 21 1 -0.3633 0.0041 1.0277 22 1 -0.3632 0.8879 -0.5174 23 1 -0.3633 -0.8921 -0.5102 24 1 1.6849 2.1180 -0.0005 25 1 3.8125 1.1798 -2.1486 26 1 4.0982 2.6976 -1.2636 27 1 5.3515 1.4340 -1.2911 28 1 1.1838 -2.6910 -2.0626 29 1 3.7042 -3.4650 0.0029 30 1 4.9557 -4.7045 0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725558924.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:47 Heat of formation + Delta-G solvation = -76.267232 kcal Electronic energy + Delta-G solvation = -16324.298553 eV Core-core repulsion = 13565.441269 eV Total energy + Delta-G solvation = -2758.857285 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 263.044 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.06804 -38.37362 -37.34878 -37.27772 -33.63868 -32.97655 -29.22332 -27.87908 -26.43373 -23.11121 -22.06948 -21.27884 -19.78020 -19.65331 -18.32718 -17.44434 -17.00241 -16.30951 -15.91685 -15.58056 -15.24564 -14.65866 -14.51822 -14.23664 -13.78517 -13.73794 -13.51795 -13.28911 -13.09823 -13.00304 -12.73823 -12.23992 -12.11749 -11.91242 -11.84846 -11.77658 -11.54578 -11.00353 -10.50156 -9.15984 -9.10975 -7.54872 -6.22601 -0.96663 0.92262 1.42314 1.54034 1.65155 1.71005 1.88356 2.09627 2.49313 2.56842 2.91897 3.46907 3.99720 4.22968 4.29410 4.30587 4.57604 4.60600 4.64729 4.81837 4.88476 4.96835 5.03733 5.24143 5.29561 5.74907 5.80057 5.90025 6.15471 6.57298 6.83732 8.33512 Molecular weight = 263.04amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.007388 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.531061 B = 3788.933195 C = 4453.054894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.049 3.951 3 C -0.317 4.317 4 C 0.007 3.993 5 H 0.080 0.920 6 C -0.121 4.121 7 S -0.173 6.173 8 C -1.163 5.163 9 S 2.720 3.280 10 O -0.891 6.891 11 O -0.975 6.975 12 N -0.949 5.949 13 C -0.367 4.367 14 H 0.118 0.882 15 C -0.029 4.029 16 N -0.874 5.874 17 Si 1.129 2.871 18 H -0.272 1.272 19 H -0.252 1.252 20 H -0.275 1.275 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.136 0.864 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.468 0.532 29 H 0.404 0.596 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 4.891 -5.614 8.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 C -0.338 4.338 4 C -0.122 4.122 5 H 0.098 0.902 6 C -0.180 4.180 7 S 0.053 5.947 8 C -1.377 5.377 9 S 2.845 3.155 10 O -0.748 6.748 11 O -0.965 6.965 12 N -0.704 5.704 13 C -0.512 4.512 14 H 0.136 0.864 15 C -0.236 4.236 16 N -0.513 5.513 17 Si 0.947 3.053 18 H -0.197 1.197 19 H -0.176 1.176 20 H -0.200 1.200 21 H 0.086 0.914 22 H 0.113 0.887 23 H 0.076 0.924 24 H 0.154 0.846 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.338 0.662 29 H 0.241 0.759 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.458 2.620 -5.111 6.704 hybrid contribution -0.291 3.413 -0.210 3.432 sum -3.750 6.033 -5.321 8.875 Atomic orbital electron populations 1.21106 0.92003 1.03505 1.02719 1.17144 0.94628 0.90255 0.93343 1.22807 0.92226 0.97126 1.21682 1.22227 0.97457 0.91105 1.01364 0.90208 1.21808 1.00010 1.00853 0.95313 1.84716 1.01520 1.10168 1.98250 1.29766 1.09268 1.21899 1.76750 1.03220 0.68744 0.68202 0.75325 1.85784 1.61925 1.92556 1.34566 1.93318 1.69111 1.87111 1.46997 1.51737 1.19814 1.16339 1.82482 1.20942 0.98182 0.81212 1.50865 0.86392 1.28180 0.91486 1.10557 0.93330 1.70949 1.18893 1.19476 1.41991 0.82733 0.76930 0.67169 0.78497 1.19737 1.17613 1.20040 0.91385 0.88700 0.92433 0.84598 0.92644 0.90263 0.92201 0.66175 0.75912 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.43 71.24 0.67 -3.95 16 2 C 0.05 1.96 5.69 -21.14 -0.12 1.84 16 3 C -0.32 -11.61 9.67 24.73 0.24 -11.37 16 4 C 0.01 0.26 3.91 29.96 0.12 0.38 16 5 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 6 C -0.12 -3.40 9.34 71.98 0.67 -2.73 16 7 S -0.17 -7.05 21.43 -55.18 -1.18 -8.23 16 8 C -1.16 -48.18 5.80 67.61 0.39 -47.79 16 9 S 2.72 109.94 3.73 -55.18 -0.21 109.74 16 10 O -0.89 -28.52 12.11 -126.85 -1.54 -30.06 16 11 O -0.97 -48.04 17.78 -126.85 -2.26 -50.29 16 12 N -0.95 -41.19 5.74 -54.27 -0.31 -41.50 16 13 C -0.37 -16.66 9.94 84.03 0.84 -15.82 16 14 H 0.12 5.02 7.82 -2.91 -0.02 5.00 16 15 C -0.03 -1.31 5.50 84.86 0.47 -0.84 16 16 N -0.87 -43.81 13.70 21.65 0.30 -43.51 16 17 Si 1.13 39.29 29.92 68.60 2.05 41.34 16 18 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.25 -7.68 7.11 99.48 0.71 -6.97 16 20 H -0.28 -9.59 7.11 99.48 0.71 -8.89 16 21 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 22 H 0.09 2.63 8.07 -2.39 -0.02 2.61 16 23 H 0.06 1.93 6.05 -2.39 -0.01 1.92 16 24 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 25 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.47 9.82 9.03 -87.93 -0.79 9.02 16 29 H 0.40 17.84 5.54 -96.75 -0.54 17.31 16 30 H 0.27 13.47 6.77 -92.71 -0.63 12.84 16 Total: -1.00 -64.26 277.07 0.12 -64.15 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.01 Total: 38.66 kcal Atomic # 6 Polarization: -83.56 SS G_CDS: 3.27 Total: -80.29 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -0.01 Total: -85.01 kcal Atomic # 8 Polarization: -76.56 SS G_CDS: -3.79 Total: -80.35 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.05 Total: 41.34 kcal Atomic # 16 Polarization: 102.89 SS G_CDS: -1.39 Total: 101.50 kcal Total: -64.26 0.12 -64.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725558924.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.121 kcal (2) G-P(sol) polarization free energy of solvation -64.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds