Wall clock time and date at job start Mon Mar 30 2020 04:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21331 * 120.00044 * 2 1 4 4 C 1.46639 * 119.99985 * 180.02562 * 2 1 3 5 5 C 1.40023 * 120.23434 * 0.02562 * 4 2 1 6 6 C 1.37891 * 119.88122 * 179.97438 * 5 4 2 7 7 F 1.35098 * 119.81336 * 180.02562 * 6 5 4 8 8 C 1.38919 * 120.36431 * 0.02635 * 6 5 4 9 9 C 1.37891 * 120.48339 * 359.66981 * 8 6 5 10 10 C 1.39078 * 120.10512 * 0.60766 * 9 8 6 11 11 N 1.38490 * 120.18482 * 179.69237 * 10 9 8 12 12 C 1.36728 * 119.99960 * 89.72506 * 11 10 9 13 13 H 1.08001 * 119.99968 * 186.06557 * 12 11 10 14 14 C 1.38900 * 119.99719 * 5.78820 * 12 11 10 15 15 N 1.31498 * 120.00011 * 16.00573 * 14 12 11 16 16 Si 1.86802 * 119.99859 * 195.99969 * 14 12 11 17 17 H 1.48502 * 109.47123 * 90.00055 * 16 14 12 18 18 H 1.48504 * 109.47224 * 210.00591 * 16 14 12 19 19 H 1.48505 * 109.46988 * 330.00071 * 16 14 12 20 20 C 1.46500 * 119.99993 * 269.72911 * 11 10 9 21 21 C 1.47201 * 109.47222 * 266.77908 * 20 11 10 22 22 N 3.29664 * 114.68297 * 40.71890 * 2 1 3 23 23 H 1.08997 * 109.47528 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47211 * 299.99883 * 1 2 3 25 25 H 1.09000 * 109.47383 * 59.99918 * 1 2 3 26 26 H 1.08007 * 120.06067 * 359.95989 * 5 4 2 27 27 H 1.07998 * 119.75673 * 179.97438 * 8 6 5 28 28 H 1.07996 * 119.94835 * 180.30048 * 9 8 6 29 29 H 0.97006 * 120.00195 * 180.02562 * 15 14 12 30 30 H 1.08991 * 109.47417 * 26.77877 * 20 11 10 31 31 H 1.09002 * 109.47383 * 146.78456 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2402 -1.2699 -0.0006 5 6 1.5450 -2.4854 -0.0017 6 6 2.2418 -3.6753 -0.0027 7 9 1.5698 -4.8473 -0.0043 8 6 3.6310 -3.6756 -0.0022 9 6 4.3308 -2.4874 -0.0074 10 6 3.6481 -1.2758 -0.0005 11 7 4.3493 -0.0815 0.0007 12 6 4.6955 0.5092 -1.1829 13 1 5.3252 1.3866 -1.1846 14 6 4.2420 -0.0226 -2.3832 15 7 3.2454 -0.8806 -2.3874 16 14 5.0477 0.4810 -3.9915 17 1 6.1708 -0.4425 -4.2930 18 1 4.0473 0.4183 -5.0873 19 1 5.5654 1.8678 -3.8728 20 6 4.7201 0.5490 1.2700 21 6 3.6836 1.5199 1.6569 22 7 2.8837 2.2703 1.9541 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.4650 -2.4910 -0.0014 27 1 4.1669 -4.6133 -0.0026 28 1 5.4107 -2.4978 -0.0118 29 1 2.9289 -1.2523 -3.2257 30 1 4.8091 -0.2146 2.0426 31 1 5.6745 1.0628 1.1554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019871043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:06 Heat of formation + Delta-G solvation = 23.122434 kcal Electronic energy + Delta-G solvation = -20068.920149 eV Core-core repulsion = 16846.267353 eV Total energy + Delta-G solvation = -3222.652796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.12390 -39.26358 -36.99806 -36.01204 -34.61969 -31.66333 -31.19658 -28.91134 -28.50581 -26.77230 -23.81487 -22.97858 -20.91598 -19.13938 -17.79768 -17.12096 -16.51260 -15.72220 -15.32806 -14.80982 -14.60163 -14.26290 -14.06469 -13.72677 -13.66719 -13.50018 -12.99656 -12.49825 -12.21160 -11.86397 -11.75747 -11.49659 -11.33756 -11.25950 -10.95520 -10.72631 -10.64481 -10.50777 -10.25947 -10.06906 -9.26231 -8.54045 -8.12220 -7.60033 -7.41923 -5.87368 -3.47265 1.67270 2.18325 3.27739 3.33442 3.35914 3.44823 3.73722 3.81635 4.34300 4.62750 5.00443 5.03542 5.12782 5.24029 5.30031 5.49179 5.66325 5.79598 5.92941 6.00631 6.12308 6.17495 6.30923 6.52119 6.62776 6.83207 6.89323 7.03346 7.47682 7.59123 7.63821 7.99814 8.62054 8.78727 8.96296 9.43617 9.82114 10.99750 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.011409 C = 0.008660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.911278 B = 2453.660173 C = 3232.428517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.383 3.617 3 O -0.417 6.417 4 C -0.104 4.104 5 C -0.117 4.117 6 C 0.045 3.955 7 F -0.160 7.160 8 C -0.132 4.132 9 C -0.116 4.116 10 C 0.312 3.688 11 N -0.541 5.541 12 C -0.239 4.239 13 H 0.090 0.910 14 C 0.000 4.000 15 N -0.884 5.884 16 Si 0.916 3.084 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.238 3.762 21 C 0.202 3.798 22 N -0.462 5.462 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.260 0.740 30 H 0.089 0.911 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 -4.973 5.133 7.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.259 3.741 3 O -0.290 6.290 4 C -0.108 4.108 5 C -0.137 4.137 6 C 0.026 3.974 7 F -0.139 7.139 8 C -0.152 4.152 9 C -0.137 4.137 10 C 0.215 3.785 11 N -0.255 5.255 12 C -0.366 4.366 13 H 0.108 0.892 14 C -0.199 4.199 15 N -0.526 5.526 16 Si 0.745 3.255 17 H -0.212 1.212 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.109 3.891 21 C -0.117 4.117 22 N -0.143 5.143 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.205 -3.344 5.357 6.318 hybrid contribution 0.083 -0.432 -1.616 1.675 sum -0.122 -3.776 3.741 5.317 Atomic orbital electron populations 1.22179 0.96698 1.03227 1.03233 1.21774 0.89933 0.88565 0.73792 1.90571 1.70822 1.33747 1.33855 1.20502 0.94828 0.92879 1.02620 1.21015 0.99170 0.90988 1.02489 1.17296 0.90143 0.80451 1.09508 1.91387 1.80839 1.46726 1.94931 1.20786 0.91946 0.98663 1.03841 1.21166 0.99588 0.91189 1.01736 1.16958 0.87997 0.86202 0.87311 1.41385 1.62047 1.20361 1.01715 1.19417 1.23981 1.11470 0.81695 0.89243 1.24849 0.97314 0.99442 0.98275 1.69893 1.24415 1.32234 1.26079 0.86056 0.78568 0.78189 0.82675 1.21152 1.21758 1.20429 1.18501 0.91723 0.90934 0.87957 1.30868 0.95006 0.94256 0.91562 1.80903 1.10520 1.11638 1.11253 0.90915 0.90559 0.90175 0.86092 0.86489 0.85958 0.92844 0.89289 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.43 10.19 36.01 0.37 -3.06 16 2 C 0.38 8.35 6.93 -30.92 -0.21 8.14 16 3 O -0.42 -10.31 10.38 5.51 0.06 -10.25 16 4 C -0.10 -2.19 4.20 -104.87 -0.44 -2.63 16 5 C -0.12 -2.22 9.41 -39.04 -0.37 -2.59 16 6 C 0.05 0.85 7.28 -39.46 -0.29 0.56 16 7 F -0.16 -2.87 17.26 2.25 0.04 -2.83 16 8 C -0.13 -2.35 10.00 -39.46 -0.39 -2.75 16 9 C -0.12 -2.21 9.91 -39.40 -0.39 -2.60 16 10 C 0.31 6.60 2.95 -83.58 -0.25 6.36 16 11 N -0.54 -11.58 1.48 -115.98 -0.17 -11.75 16 12 C -0.24 -5.76 8.85 -15.12 -0.13 -5.89 16 13 H 0.09 2.11 7.88 -52.49 -0.41 1.70 16 14 C 0.00 0.00 5.30 -17.45 -0.09 -0.09 16 15 N -0.88 -22.67 9.48 55.49 0.53 -22.15 16 16 Si 0.92 20.54 29.58 -169.99 -5.03 15.51 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 C 0.24 4.12 6.13 -6.83 -0.04 4.07 16 21 C 0.20 4.11 12.75 -20.75 -0.26 3.84 16 22 N -0.46 -10.38 17.22 42.17 0.73 -9.66 16 23 H 0.07 1.10 5.60 -51.93 -0.29 0.81 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.12 2.03 5.92 -52.48 -0.31 1.72 16 27 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.09 1.24 8.02 -51.93 -0.42 0.82 16 31 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 LS Contribution 276.82 15.07 4.17 4.17 Total: -1.00 -29.57 276.82 -4.86 -34.43 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -2.68 Total: -0.83 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.51 Total: 3.36 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 1.08 Total: -43.55 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.06 Total: -10.25 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.57 -4.86 -34.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019871043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.557 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds