Wall clock time and date at job start Mon Mar 30 2020 04:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21331 * 120.00044 * 2 1 4 4 C 1.46639 * 119.99985 * 180.02562 * 2 1 3 5 5 C 1.40023 * 120.23434 * 0.02562 * 4 2 1 6 6 C 1.37891 * 119.88122 * 179.97438 * 5 4 2 7 7 F 1.35098 * 119.81336 * 180.02562 * 6 5 4 8 8 C 1.38919 * 120.36431 * 0.02635 * 6 5 4 9 9 C 1.37891 * 120.48339 * 359.66981 * 8 6 5 10 10 C 1.39078 * 120.10512 * 0.60766 * 9 8 6 11 11 N 1.38490 * 120.18482 * 179.69237 * 10 9 8 12 12 C 1.36728 * 119.99960 * 89.72506 * 11 10 9 13 13 H 1.08001 * 119.99968 * 186.06557 * 12 11 10 14 14 C 1.38900 * 119.99719 * 5.78820 * 12 11 10 15 15 N 1.31498 * 120.00011 * 16.00573 * 14 12 11 16 16 Si 1.86802 * 119.99859 * 195.99969 * 14 12 11 17 17 H 1.48502 * 109.47123 * 90.00055 * 16 14 12 18 18 H 1.48504 * 109.47224 * 210.00591 * 16 14 12 19 19 H 1.48505 * 109.46988 * 330.00071 * 16 14 12 20 20 C 1.46500 * 119.99993 * 269.72911 * 11 10 9 21 21 C 1.47201 * 109.47222 * 266.77908 * 20 11 10 22 22 N 3.29664 * 114.68297 * 40.71890 * 2 1 3 23 23 H 1.08997 * 109.47528 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47211 * 299.99883 * 1 2 3 25 25 H 1.09000 * 109.47383 * 59.99918 * 1 2 3 26 26 H 1.08007 * 120.06067 * 359.95989 * 5 4 2 27 27 H 1.07998 * 119.75673 * 179.97438 * 8 6 5 28 28 H 1.07996 * 119.94835 * 180.30048 * 9 8 6 29 29 H 0.97006 * 120.00195 * 180.02562 * 15 14 12 30 30 H 1.08991 * 109.47417 * 26.77877 * 20 11 10 31 31 H 1.09002 * 109.47383 * 146.78456 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2402 -1.2699 -0.0006 5 6 1.5450 -2.4854 -0.0017 6 6 2.2418 -3.6753 -0.0027 7 9 1.5698 -4.8473 -0.0043 8 6 3.6310 -3.6756 -0.0022 9 6 4.3308 -2.4874 -0.0074 10 6 3.6481 -1.2758 -0.0005 11 7 4.3493 -0.0815 0.0007 12 6 4.6955 0.5092 -1.1829 13 1 5.3252 1.3866 -1.1846 14 6 4.2420 -0.0226 -2.3832 15 7 3.2454 -0.8806 -2.3874 16 14 5.0477 0.4810 -3.9915 17 1 6.1708 -0.4425 -4.2930 18 1 4.0473 0.4183 -5.0873 19 1 5.5654 1.8678 -3.8728 20 6 4.7201 0.5490 1.2700 21 6 3.6836 1.5199 1.6569 22 7 2.8837 2.2703 1.9541 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.4650 -2.4910 -0.0014 27 1 4.1669 -4.6133 -0.0026 28 1 5.4107 -2.4978 -0.0118 29 1 2.9289 -1.2523 -3.2257 30 1 4.8091 -0.2146 2.0426 31 1 5.6745 1.0628 1.1554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019871043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:06 Heat of formation + Delta-G solvation = 7.793249 kcal Electronic energy + Delta-G solvation = -20069.584872 eV Core-core repulsion = 16846.267353 eV Total energy + Delta-G solvation = -3223.317520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.56249 -40.83351 -38.62549 -37.56004 -36.24444 -33.40192 -32.71956 -30.39793 -29.95643 -28.39299 -25.44809 -24.48826 -22.47592 -20.69063 -19.44179 -18.65762 -18.02684 -17.24638 -16.85372 -16.33458 -16.25233 -15.81762 -15.70226 -15.29824 -15.25668 -14.96399 -14.49506 -14.03916 -13.76746 -13.40863 -13.31185 -13.11351 -12.89319 -12.81179 -12.68020 -12.32255 -12.14675 -12.08960 -11.85725 -11.81349 -10.99292 -10.21507 -9.61058 -9.15165 -9.10982 -7.65398 -5.28423 0.14904 0.69216 1.49726 1.52992 1.57367 1.87832 2.16194 2.27413 2.58845 3.09003 3.31578 3.51863 3.61130 3.72321 3.78573 4.07278 4.25301 4.44685 4.61971 4.65564 4.72591 4.84272 4.91019 5.07417 5.18285 5.34274 5.41287 5.55132 5.65663 6.08067 6.08910 6.31048 7.04916 7.17173 7.21744 7.77241 8.08587 9.14881 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.011409 C = 0.008660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.911278 B = 2453.660173 C = 3232.428517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.373 3.627 3 O -0.455 6.455 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.040 3.960 7 F -0.155 7.155 8 C -0.121 4.121 9 C -0.121 4.121 10 C 0.297 3.703 11 N -0.550 5.550 12 C -0.239 4.239 13 H 0.087 0.913 14 C -0.041 4.041 15 N -0.901 5.901 16 Si 0.960 3.040 17 H -0.281 1.281 18 H -0.308 1.308 19 H -0.280 1.280 20 C 0.231 3.769 21 C 0.216 3.784 22 N -0.508 5.508 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.247 0.753 30 H 0.127 0.873 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -6.367 5.766 8.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.252 3.748 3 O -0.331 6.331 4 C -0.130 4.130 5 C -0.136 4.136 6 C 0.021 3.979 7 F -0.134 7.134 8 C -0.141 4.141 9 C -0.142 4.142 10 C 0.201 3.799 11 N -0.264 5.264 12 C -0.366 4.366 13 H 0.105 0.895 14 C -0.237 4.237 15 N -0.545 5.545 16 Si 0.790 3.210 17 H -0.208 1.208 18 H -0.236 1.236 19 H -0.206 1.206 20 C 0.103 3.897 21 C -0.102 4.102 22 N -0.190 5.190 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.158 0.842 27 H 0.165 0.835 28 H 0.155 0.845 29 H 0.057 0.943 30 H 0.145 0.855 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.288 -4.761 6.020 7.681 hybrid contribution -0.091 -0.071 -1.735 1.739 sum 0.197 -4.832 4.285 6.461 Atomic orbital electron populations 1.22151 0.93954 1.04961 1.03668 1.22448 0.91767 0.88400 0.72192 1.90549 1.71928 1.34852 1.35756 1.20626 0.95249 0.93276 1.03842 1.21206 1.00269 0.90554 1.01558 1.17424 0.90642 0.80504 1.09333 1.91403 1.80799 1.46322 1.94878 1.21111 0.91787 0.99582 1.01629 1.21329 1.00448 0.90818 1.01564 1.17290 0.88299 0.86826 0.87499 1.41499 1.62218 1.20559 1.02145 1.19527 1.23397 1.10918 0.82785 0.89474 1.25311 0.98086 1.00326 1.00001 1.70059 1.25558 1.33731 1.25194 0.85371 0.77477 0.77790 0.80357 1.20789 1.23604 1.20558 1.19086 0.91629 0.91484 0.87509 1.31491 0.94635 0.93729 0.90346 1.80890 1.11919 1.13323 1.12835 0.88544 0.89398 0.90304 0.84211 0.83515 0.84455 0.94257 0.85525 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.42 10.19 71.24 0.73 -5.70 16 2 C 0.37 16.03 6.93 27.88 0.19 16.22 16 3 O -0.46 -22.52 10.38 -3.19 -0.03 -22.55 16 4 C -0.13 -5.14 4.20 -20.03 -0.08 -5.22 16 5 C -0.12 -4.18 9.41 22.62 0.21 -3.96 16 6 C 0.04 1.39 7.28 22.35 0.16 1.55 16 7 F -0.15 -5.12 17.26 44.97 0.78 -4.35 16 8 C -0.12 -3.95 10.00 22.35 0.22 -3.72 16 9 C -0.12 -4.31 9.91 22.39 0.22 -4.08 16 10 C 0.30 12.06 2.95 38.92 0.11 12.18 16 11 N -0.55 -22.74 1.48 -520.83 -0.77 -23.51 16 12 C -0.24 -11.28 8.85 84.09 0.74 -10.54 16 13 H 0.09 4.06 7.88 -2.91 -0.02 4.03 16 14 C -0.04 -2.03 5.30 84.90 0.45 -1.58 16 15 N -0.90 -46.01 9.48 21.66 0.21 -45.81 16 16 Si 0.96 42.28 29.58 68.60 2.03 44.31 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.31 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 C 0.23 7.51 6.13 84.57 0.52 8.03 16 21 C 0.22 8.61 12.75 89.44 1.14 9.75 16 22 N -0.51 -22.81 17.22 20.01 0.34 -22.46 16 23 H 0.10 2.71 5.60 -2.39 -0.01 2.70 16 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.14 4.34 5.92 -2.91 -0.02 4.32 16 27 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 28 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.25 12.87 8.31 -92.70 -0.77 12.10 16 30 H 0.13 3.14 8.02 -2.39 -0.02 3.12 16 31 H 0.13 3.39 8.07 -2.39 -0.02 3.37 16 Total: -1.00 -63.02 276.82 8.35 -54.68 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.17 Total: 6.76 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 4.62 Total: 12.93 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -0.22 Total: -91.79 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.03 Total: -22.55 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.78 Total: -4.35 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -63.02 8.35 -54.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019871043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.472 kcal (2) G-P(sol) polarization free energy of solvation -63.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds