Wall clock time and date at job start Mon Mar 30 2020 04:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38298 * 119.92042 * 2 1 4 4 C 1.38105 * 120.07341 * 180.28108 * 3 2 1 5 5 C 1.38930 * 119.91812 * 359.48775 * 4 3 2 6 6 N 1.39722 * 120.07134 * 180.27994 * 5 4 3 7 7 C 1.46509 * 120.00166 * 352.77224 * 6 5 4 8 8 C 1.34778 * 120.00092 * 172.78004 * 6 5 4 9 9 O 1.21468 * 120.00213 * 5.99591 * 8 6 5 10 10 C 1.48737 * 120.00195 * 186.00214 * 8 6 5 11 11 O 1.21512 * 119.99883 * 355.82300 * 10 8 6 12 12 N 1.34769 * 120.00262 * 175.82716 * 10 8 6 13 13 C 1.36113 * 120.00251 * 179.97438 * 12 10 8 14 14 H 1.08006 * 120.00359 * 359.97438 * 13 12 10 15 15 C 1.39588 * 120.00123 * 180.02562 * 13 12 10 16 16 N 1.31009 * 120.00111 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47492 * 59.99540 * 17 15 13 19 19 H 1.48503 * 109.47422 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47156 * 299.99648 * 17 15 13 21 21 C 1.38932 * 119.85331 * 0.26176 * 5 4 3 22 22 C 1.38094 * 119.92264 * 359.97438 * 21 5 4 23 23 H 1.09000 * 109.47544 * 270.22951 * 1 2 3 24 24 H 1.09003 * 109.47612 * 30.22884 * 1 2 3 25 25 H 1.08998 * 109.47383 * 150.22808 * 1 2 3 26 26 H 1.07997 * 119.96683 * 0.04298 * 3 2 1 27 27 H 1.07993 * 120.03733 * 179.76982 * 4 3 2 28 28 H 1.09000 * 109.46824 * 95.83782 * 7 6 5 29 29 H 1.08993 * 109.47143 * 215.83751 * 7 6 5 30 30 H 1.08994 * 109.47015 * 335.84233 * 7 6 5 31 31 H 0.97002 * 119.99818 * 0.02562 * 12 10 8 32 32 H 0.97006 * 119.99877 * 180.02562 * 16 15 13 33 33 H 1.08003 * 120.03496 * 180.02562 * 21 5 4 34 34 H 1.07995 * 119.96062 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5778 1.2023 -0.0059 5 6 4.2740 0.0001 -0.0010 6 7 5.6712 0.0001 -0.0010 7 6 6.4038 1.2582 -0.1657 8 6 6.3451 -1.1572 0.1504 9 8 5.7429 -2.2117 0.1775 10 6 7.8264 -1.1432 0.2844 11 8 8.4359 -0.0971 0.1815 12 7 8.4926 -2.2908 0.5198 13 6 9.8482 -2.2781 0.6420 14 1 10.3901 -1.3484 0.5498 15 6 10.5382 -3.4669 0.8853 16 7 9.8811 -4.5948 0.9966 17 14 12.3986 -3.4493 1.0536 18 1 12.7848 -2.5717 2.1875 19 1 12.8857 -4.8289 1.3078 20 1 13.0042 -2.9332 -0.2003 21 6 3.5778 -1.2022 0.0042 22 6 2.1968 -1.1986 0.0051 23 1 -0.3634 0.0041 1.0276 24 1 -0.3634 0.8879 -0.5174 25 1 -0.3634 -0.8920 -0.5103 26 1 1.6550 2.1329 0.0007 27 1 4.1159 2.1387 -0.0096 28 1 6.6759 1.6510 0.8139 29 1 7.3069 1.0790 -0.7490 30 1 5.7734 1.9804 -0.6844 31 1 8.0061 -3.1261 0.6015 32 1 10.3606 -5.4208 1.1661 33 1 4.1160 -2.1386 0.0085 34 1 1.6550 -2.1327 0.0096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050009028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:04 Heat of formation + Delta-G solvation = -21.614004 kcal Electronic energy + Delta-G solvation = -19054.050824 eV Core-core repulsion = 15952.918416 eV Total energy + Delta-G solvation = -3101.132409 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62398 -38.70662 -37.29203 -35.76572 -34.20787 -31.77095 -31.50143 -30.73495 -27.19941 -26.74168 -25.49274 -23.08656 -22.38491 -20.83235 -19.24757 -18.27701 -17.16735 -16.60965 -15.94158 -15.55867 -15.06847 -14.91300 -14.23220 -13.95930 -13.74749 -13.71729 -13.23207 -13.22458 -13.02355 -12.48371 -12.19181 -11.99748 -11.89037 -11.74607 -11.63228 -11.25003 -10.92993 -10.63701 -10.48869 -9.86528 -9.75774 -9.66434 -8.73065 -8.34945 -8.06545 -7.53709 -6.78934 -4.09865 1.39433 1.63232 2.36577 3.00418 3.10600 3.11254 3.17852 3.94045 3.94917 4.18287 4.61574 4.96489 5.03166 5.06434 5.19696 5.33422 5.43359 5.58164 5.58911 5.72080 5.81839 5.93425 5.94312 5.98781 6.27300 6.40605 6.49161 6.57953 6.82197 6.85482 7.19637 7.41711 7.53453 7.64755 8.16773 8.42264 8.82792 9.17593 9.71718 10.35086 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.045980 B = 0.004219 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.812575 B = 6634.712563 C = 7207.353479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.162 4.162 5 C 0.156 3.844 6 N -0.537 5.537 7 C 0.072 3.928 8 C 0.512 3.488 9 O -0.522 6.522 10 C 0.389 3.611 11 O -0.590 6.590 12 N -0.490 5.490 13 C -0.304 4.304 14 H 0.115 0.885 15 C 0.032 3.968 16 N -0.863 5.863 17 Si 0.942 3.058 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.170 4.170 22 C -0.098 4.098 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.405 0.595 32 H 0.283 0.717 33 H 0.185 0.815 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 7.334 -1.577 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.183 4.183 5 C 0.060 3.940 6 N -0.259 5.259 7 C -0.070 4.070 8 C 0.301 3.699 9 O -0.399 6.399 10 C 0.174 3.826 11 O -0.479 6.479 12 N -0.123 5.123 13 C -0.435 4.435 14 H 0.133 0.867 15 C -0.175 4.175 16 N -0.500 5.500 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.189 4.189 22 C -0.116 4.116 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.241 0.759 32 H 0.094 0.906 33 H 0.201 0.799 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.552 7.230 -1.589 13.720 hybrid contribution 0.484 -0.363 0.200 0.637 sum -11.068 6.867 -1.389 13.099 Atomic orbital electron populations 1.20692 0.91676 1.02194 1.01762 1.19861 0.95777 0.93419 1.03755 1.20689 0.93148 0.97316 1.00567 1.20829 0.94420 0.96427 1.06637 1.18177 0.82266 0.94711 0.98831 1.45208 1.03849 1.09502 1.67301 1.22425 0.97770 0.83281 1.03482 1.20985 0.90306 0.82443 0.76170 1.90313 1.68900 1.31178 1.49508 1.18598 0.86003 0.85884 0.92086 1.90516 1.68072 1.30052 1.59302 1.41568 1.07852 1.08434 1.54469 1.19892 0.81283 0.96315 1.45973 0.86747 1.25641 1.01946 0.94335 0.95624 1.69471 1.38132 0.99290 1.43099 0.85740 0.80299 0.77700 0.79573 1.19254 1.20489 1.19238 1.22882 0.94481 1.00489 1.01031 1.21036 0.93944 0.97196 0.99449 0.91771 0.92074 0.91942 0.86240 0.85652 0.91835 0.86633 0.92049 0.75937 0.90619 0.79929 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.13 -1.64 5.88 -104.58 -0.62 -2.25 16 3 C -0.10 -1.26 9.69 -39.61 -0.38 -1.64 16 4 C -0.16 -2.34 9.16 -39.37 -0.36 -2.70 16 5 C 0.16 2.72 6.49 -83.75 -0.54 2.17 16 6 N -0.54 -10.16 3.09 -121.58 -0.38 -10.54 16 7 C 0.07 1.17 8.77 59.85 0.53 1.70 16 8 C 0.51 11.24 7.65 -11.92 -0.09 11.15 16 9 O -0.52 -11.82 12.87 5.39 0.07 -11.75 16 10 C 0.39 9.50 7.71 -11.92 -0.09 9.41 16 11 O -0.59 -14.84 12.77 5.36 0.07 -14.77 16 12 N -0.49 -12.64 5.24 -11.62 -0.06 -12.70 16 13 C -0.30 -8.05 9.67 -15.15 -0.15 -8.20 16 14 H 0.11 3.07 7.15 -52.48 -0.38 2.69 16 15 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 16 N -0.86 -22.33 13.03 55.53 0.72 -21.61 16 17 Si 0.94 19.38 29.56 -169.99 -5.02 14.36 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 C -0.17 -2.97 9.05 -39.38 -0.36 -3.33 16 22 C -0.10 -1.42 9.69 -39.61 -0.38 -1.81 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 25 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.13 1.54 6.23 -52.49 -0.33 1.22 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.12 2.11 5.72 -51.93 -0.30 1.82 16 30 H 0.06 0.79 6.20 -51.93 -0.32 0.47 16 31 H 0.41 10.51 7.35 -40.82 -0.30 10.21 16 32 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 33 H 0.18 3.59 4.53 -56.24 -0.25 3.33 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 291.23 15.07 4.39 4.39 Total: -1.00 -28.43 291.23 -5.94 -34.37 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -3.54 Total: 13.68 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.18 Total: 4.56 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.29 Total: -44.84 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: 0.14 Total: -26.52 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.43 -5.94 -34.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050009028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.755 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds