Wall clock time and date at job start Mon Mar 30 2020 04:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38298 * 119.92042 * 2 1 4 4 C 1.38105 * 120.07341 * 180.28108 * 3 2 1 5 5 C 1.38930 * 119.91812 * 359.48775 * 4 3 2 6 6 N 1.39722 * 120.07134 * 180.27994 * 5 4 3 7 7 C 1.46509 * 120.00166 * 352.77224 * 6 5 4 8 8 C 1.34778 * 120.00092 * 172.78004 * 6 5 4 9 9 O 1.21468 * 120.00213 * 5.99591 * 8 6 5 10 10 C 1.48737 * 120.00195 * 186.00214 * 8 6 5 11 11 O 1.21512 * 119.99883 * 355.82300 * 10 8 6 12 12 N 1.34769 * 120.00262 * 175.82716 * 10 8 6 13 13 C 1.36113 * 120.00251 * 179.97438 * 12 10 8 14 14 H 1.08006 * 120.00359 * 359.97438 * 13 12 10 15 15 C 1.39588 * 120.00123 * 180.02562 * 13 12 10 16 16 N 1.31009 * 120.00111 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47492 * 59.99540 * 17 15 13 19 19 H 1.48503 * 109.47422 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47156 * 299.99648 * 17 15 13 21 21 C 1.38932 * 119.85331 * 0.26176 * 5 4 3 22 22 C 1.38094 * 119.92264 * 359.97438 * 21 5 4 23 23 H 1.09000 * 109.47544 * 270.22951 * 1 2 3 24 24 H 1.09003 * 109.47612 * 30.22884 * 1 2 3 25 25 H 1.08998 * 109.47383 * 150.22808 * 1 2 3 26 26 H 1.07997 * 119.96683 * 0.04298 * 3 2 1 27 27 H 1.07993 * 120.03733 * 179.76982 * 4 3 2 28 28 H 1.09000 * 109.46824 * 95.83782 * 7 6 5 29 29 H 1.08993 * 109.47143 * 215.83751 * 7 6 5 30 30 H 1.08994 * 109.47015 * 335.84233 * 7 6 5 31 31 H 0.97002 * 119.99818 * 0.02562 * 12 10 8 32 32 H 0.97006 * 119.99877 * 180.02562 * 16 15 13 33 33 H 1.08003 * 120.03496 * 180.02562 * 21 5 4 34 34 H 1.07995 * 119.96062 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5778 1.2023 -0.0059 5 6 4.2740 0.0001 -0.0010 6 7 5.6712 0.0001 -0.0010 7 6 6.4038 1.2582 -0.1657 8 6 6.3451 -1.1572 0.1504 9 8 5.7429 -2.2117 0.1775 10 6 7.8264 -1.1432 0.2844 11 8 8.4359 -0.0971 0.1815 12 7 8.4926 -2.2908 0.5198 13 6 9.8482 -2.2781 0.6420 14 1 10.3901 -1.3484 0.5498 15 6 10.5382 -3.4669 0.8853 16 7 9.8811 -4.5948 0.9966 17 14 12.3986 -3.4493 1.0536 18 1 12.7848 -2.5717 2.1875 19 1 12.8857 -4.8289 1.3078 20 1 13.0042 -2.9332 -0.2003 21 6 3.5778 -1.2022 0.0042 22 6 2.1968 -1.1986 0.0051 23 1 -0.3634 0.0041 1.0276 24 1 -0.3634 0.8879 -0.5174 25 1 -0.3634 -0.8920 -0.5103 26 1 1.6550 2.1329 0.0007 27 1 4.1159 2.1387 -0.0096 28 1 6.6759 1.6510 0.8139 29 1 7.3069 1.0790 -0.7490 30 1 5.7734 1.9804 -0.6844 31 1 8.0061 -3.1261 0.6015 32 1 10.3606 -5.4208 1.1661 33 1 4.1160 -2.1386 0.0085 34 1 1.6550 -2.1327 0.0096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050009028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:04 Heat of formation + Delta-G solvation = -39.623774 kcal Electronic energy + Delta-G solvation = -19054.831787 eV Core-core repulsion = 15952.918416 eV Total energy + Delta-G solvation = -3101.913371 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.17131 -40.19435 -38.98842 -37.31243 -36.05506 -33.53405 -32.80911 -31.88552 -28.42702 -28.35226 -27.08493 -24.65313 -23.57385 -22.14216 -20.97317 -20.14533 -18.70189 -18.19900 -17.46972 -17.18323 -16.79525 -16.18267 -15.87433 -15.30617 -15.21596 -15.09999 -14.61259 -14.44369 -14.40801 -14.10607 -13.72093 -13.25748 -13.05022 -12.99097 -12.90966 -12.76882 -12.58704 -12.12733 -12.01449 -11.67648 -11.32132 -11.03857 -10.30744 -9.87038 -9.85029 -8.81573 -8.69455 -6.13184 0.02825 0.48873 0.79438 1.38096 1.48137 1.49870 1.60059 2.24291 2.25623 2.86062 2.93374 3.11411 3.79336 3.93386 4.06156 4.13022 4.27248 4.38314 4.52013 4.59536 4.65118 4.84852 4.91646 5.02854 5.14133 5.18839 5.23118 5.28016 5.46652 5.60813 5.65290 5.75105 6.05723 6.18036 6.28603 6.68686 6.89184 7.21329 7.74079 8.45688 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.045980 B = 0.004219 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.812575 B = 6634.712563 C = 7207.353479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.117 4.117 3 C -0.095 4.095 4 C -0.154 4.154 5 C 0.118 3.882 6 N -0.530 5.530 7 C 0.072 3.928 8 C 0.509 3.491 9 O -0.538 6.538 10 C 0.389 3.611 11 O -0.600 6.600 12 N -0.504 5.504 13 C -0.342 4.342 14 H 0.104 0.896 15 C -0.004 4.004 16 N -0.893 5.893 17 Si 1.011 2.989 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.263 1.263 21 C -0.194 4.194 22 C -0.107 4.107 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.159 0.841 27 H 0.150 0.850 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.400 0.600 32 H 0.290 0.710 33 H 0.155 0.845 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 9.209 -1.644 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.113 4.113 4 C -0.174 4.174 5 C 0.024 3.976 6 N -0.252 5.252 7 C -0.069 4.069 8 C 0.296 3.704 9 O -0.417 6.417 10 C 0.174 3.826 11 O -0.489 6.489 12 N -0.138 5.138 13 C -0.472 4.472 14 H 0.121 0.879 15 C -0.209 4.209 16 N -0.530 5.530 17 Si 0.832 3.168 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.187 1.187 21 C -0.214 4.214 22 C -0.126 4.126 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.176 0.824 27 H 0.167 0.833 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.235 0.765 32 H 0.100 0.900 33 H 0.172 0.828 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.376 9.134 -1.661 16.282 hybrid contribution 0.773 -0.830 0.191 1.150 sum -12.603 8.304 -1.471 15.164 Atomic orbital electron populations 1.20777 0.88772 1.03690 1.03000 1.20341 0.97875 0.92687 1.00914 1.21183 0.92550 0.98880 0.98726 1.21144 0.95333 0.95929 1.05034 1.18429 0.81232 0.96075 1.01825 1.45181 1.04910 1.08968 1.66091 1.22463 0.97681 0.83025 1.03715 1.20518 0.89210 0.83570 0.77083 1.90355 1.68789 1.32016 1.50548 1.19163 0.87381 0.85394 0.90679 1.90500 1.69065 1.30252 1.59125 1.41646 1.07938 1.08586 1.55613 1.20006 0.81800 0.96708 1.48672 0.87859 1.26581 1.06578 0.93405 0.94300 1.69544 1.40050 0.99933 1.43476 0.84730 0.74221 0.78226 0.79636 1.18755 1.19200 1.18725 1.22682 0.95972 0.99679 1.03030 1.21239 0.92801 0.99038 0.99488 0.90493 0.89997 0.91168 0.82357 0.83291 0.91611 0.88931 0.87926 0.76525 0.89970 0.82840 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.23 0.71 -0.82 16 2 C -0.12 -2.62 5.88 -19.84 -0.12 -2.74 16 3 C -0.10 -2.02 9.69 22.25 0.22 -1.80 16 4 C -0.15 -3.97 9.16 22.40 0.21 -3.77 16 5 C 0.12 4.05 6.49 38.22 0.25 4.30 16 6 N -0.53 -20.22 3.09 -656.87 -2.03 -22.25 16 7 C 0.07 2.29 8.77 127.77 1.12 3.41 16 8 C 0.51 23.30 7.65 87.05 0.67 23.97 16 9 O -0.54 -25.81 12.87 -3.62 -0.05 -25.86 16 10 C 0.39 19.84 7.71 87.05 0.67 20.51 16 11 O -0.60 -31.23 12.77 -3.75 -0.05 -31.27 16 12 N -0.50 -27.40 5.24 -308.96 -1.62 -29.02 16 13 C -0.34 -18.86 9.67 84.36 0.82 -18.05 16 14 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 15 C 0.00 -0.19 5.51 85.14 0.47 0.28 16 16 N -0.89 -47.38 13.03 21.77 0.28 -47.10 16 17 Si 1.01 39.95 29.56 68.60 2.03 41.97 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 C -0.19 -6.89 9.05 22.40 0.20 -6.69 16 22 C -0.11 -2.98 9.69 22.25 0.22 -2.77 16 23 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 25 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 27 H 0.15 3.04 6.23 -2.91 -0.02 3.02 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.09 3.42 5.72 -2.39 -0.01 3.41 16 30 H 0.10 2.39 6.20 -2.39 -0.01 2.37 16 31 H 0.40 22.05 7.35 -92.71 -0.68 21.37 16 32 H 0.29 14.12 8.30 -92.70 -0.77 13.35 16 33 H 0.15 6.39 4.53 -62.41 -0.28 6.10 16 34 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -64.40 291.23 4.19 -60.22 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.20 Total: 37.47 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 5.43 Total: 15.83 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -3.37 Total: -98.37 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -0.09 Total: -57.13 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.97 kcal Total: -64.40 4.19 -60.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050009028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.594 kcal (2) G-P(sol) polarization free energy of solvation -64.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds