Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86796 * 119.99658 * 2 1 4 4 H 1.48501 * 109.47472 * 269.99844 * 3 2 1 5 5 H 1.48506 * 109.47232 * 29.99854 * 3 2 1 6 6 H 1.48504 * 109.47136 * 149.99583 * 3 2 1 7 7 C 1.38791 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99877 * 179.97438 * 7 2 1 9 9 O 1.34862 * 120.00367 * 0.02562 * 7 2 1 10 10 C 1.34767 * 117.00205 * 180.02562 * 9 7 2 11 11 O 1.21545 * 120.00279 * 359.97438 * 10 9 7 12 12 C 1.47351 * 120.00123 * 180.02562 * 10 9 7 13 13 C 1.39490 * 120.32587 * 359.97438 * 12 10 9 14 14 C 1.38447 * 120.52148 * 179.97438 * 13 12 10 15 15 C 1.38098 * 119.95265 * 359.82828 * 14 13 12 16 16 C 1.38776 * 120.00821 * 0.30178 * 15 14 13 17 17 C 1.38376 * 120.72880 * 359.77194 * 16 15 14 18 18 O 1.35646 * 120.28218 * 179.97438 * 17 16 15 19 19 C 1.50708 * 122.46123 * 180.67017 * 15 14 13 20 20 C 1.52710 * 110.59859 * 342.15223 * 19 15 14 21 21 C 1.53326 * 108.37590 * 51.25179 * 20 19 15 22 22 C 1.50693 * 117.55243 * 179.77267 * 14 13 12 23 23 H 0.96996 * 120.00491 * 0.02562 * 1 2 3 24 24 H 1.07995 * 119.74021 * 359.96570 * 13 12 10 25 25 H 1.07997 * 119.63515 * 179.77052 * 16 15 14 26 26 H 0.96702 * 113.99768 * 270.02430 * 18 17 16 27 27 H 1.09000 * 109.24499 * 221.86831 * 19 15 14 28 28 H 1.09001 * 109.25319 * 102.44523 * 19 15 14 29 29 H 1.09001 * 109.69004 * 291.52934 * 20 19 15 30 30 H 1.09001 * 109.67905 * 170.97004 * 20 19 15 31 31 H 1.08993 * 109.68229 * 49.68396 * 21 20 19 32 32 H 1.09002 * 109.68276 * 170.20497 * 21 20 19 33 33 H 1.09001 * 109.24884 * 41.98250 * 22 14 13 34 34 H 1.09004 * 109.21340 * 282.55116 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0083 -1.2020 0.0005 8 1 3.0883 -1.2019 0.0001 9 8 1.3341 -2.3699 0.0005 10 6 2.0681 -3.5002 0.0016 11 8 3.2819 -3.4366 0.0021 12 6 1.3992 -4.8131 0.0011 13 6 0.0067 -4.8941 0.0001 14 6 -0.6260 -6.1256 -0.0009 15 6 0.1232 -7.2857 -0.0045 16 6 1.5093 -7.2167 -0.0007 17 6 2.1564 -5.9936 0.0018 18 8 3.5116 -5.9368 0.0060 19 6 -0.5061 -8.6550 -0.0206 20 6 -1.9702 -8.5784 0.4066 21 6 -2.6631 -7.4990 -0.4335 22 6 -2.1329 -6.1351 0.0033 23 1 -0.4851 0.8400 -0.0004 24 1 -0.5826 -3.9891 0.0002 25 1 2.0892 -8.1278 0.0002 26 1 3.9019 -5.9212 0.8907 27 1 0.0348 -9.3071 0.6652 28 1 -0.4468 -9.0660 -1.0285 29 1 -2.0314 -8.3170 1.4630 30 1 -2.4527 -9.5411 0.2376 31 1 -2.4428 -7.6577 -1.4890 32 1 -3.7402 -7.5435 -0.2724 33 1 -2.4990 -5.3708 -0.6823 34 1 -2.4902 -5.9159 1.0095 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065687223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = -115.855274 kcal Electronic energy + Delta-G solvation = -19279.839252 eV Core-core repulsion = 16142.327484 eV Total energy + Delta-G solvation = -3137.511768 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16237 -38.66520 -37.45346 -34.96267 -34.78768 -32.43825 -32.10813 -29.84597 -28.33312 -25.56712 -23.94142 -22.83601 -22.05667 -20.83237 -19.26768 -17.70074 -17.47370 -16.68096 -15.99134 -15.30221 -14.95379 -14.42937 -14.35881 -14.25569 -14.07707 -13.85191 -13.47875 -12.87097 -12.78251 -12.41346 -12.11293 -11.90918 -11.60419 -11.30089 -10.97299 -10.90839 -10.65426 -10.50094 -10.44300 -10.37049 -10.20519 -9.82013 -8.90762 -8.59592 -8.50074 -8.11161 -6.44599 -4.06941 1.18189 1.54732 3.12821 3.18531 3.24704 3.43000 3.93113 4.21666 4.44774 4.59709 4.69494 4.80211 4.84323 5.10567 5.15457 5.16510 5.27971 5.51355 5.54127 5.56908 5.77522 5.80476 5.91812 5.96622 6.00084 6.18699 6.20995 6.26661 6.38791 6.57159 6.78885 7.02083 7.09823 7.38928 7.94121 8.07440 8.73995 9.04548 9.86726 10.73469 Molecular weight = 262.10amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.005345 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.624679 B = 5237.747625 C = 6223.332595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.373 4.373 8 H 0.097 0.903 9 O -0.209 6.209 10 C 0.433 3.567 11 O -0.539 6.539 12 C -0.118 4.118 13 C -0.057 4.057 14 C -0.100 4.100 15 C -0.051 4.051 16 C -0.164 4.164 17 C 0.153 3.847 18 O -0.478 6.478 19 C -0.079 4.079 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.079 4.079 23 H 0.270 0.730 24 H 0.143 0.857 25 H 0.128 0.872 26 H 0.390 0.610 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 -15.246 1.645 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.449 4.449 8 H 0.114 0.886 9 O -0.117 6.117 10 C 0.281 3.719 11 O -0.436 6.436 12 C -0.120 4.120 13 C -0.075 4.075 14 C -0.100 4.100 15 C -0.052 4.052 16 C -0.182 4.182 17 C 0.107 3.893 18 O -0.288 6.288 19 C -0.116 4.116 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.116 4.116 23 H 0.080 0.920 24 H 0.161 0.839 25 H 0.146 0.854 26 H 0.246 0.754 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.087 -15.040 1.043 15.911 hybrid contribution 0.612 0.903 0.456 1.182 sum -4.475 -14.137 1.499 14.904 Atomic orbital electron populations 1.69978 1.06040 1.27812 1.46008 1.25360 0.95848 0.98894 0.96273 0.85651 0.79063 0.79577 0.78800 1.19823 1.20286 1.19030 1.21293 0.92534 0.79817 1.51239 0.88560 1.83901 1.39189 1.13221 1.75343 1.20558 0.85973 0.85198 0.80165 1.90653 1.14746 1.87687 1.50550 1.19818 0.93793 0.91791 1.06596 1.21568 0.93241 0.98177 0.94554 1.19556 0.95687 0.91969 1.02794 1.19555 0.92454 0.94666 0.98511 1.21226 0.94123 0.96908 1.05966 1.18339 0.83425 0.90571 0.96958 1.84737 1.15015 1.95997 1.33036 1.20486 0.95769 0.93319 1.02025 1.21548 0.94904 0.98937 1.00311 1.21547 0.99544 0.94530 1.00054 1.20451 0.90841 0.97926 1.02336 0.91989 0.83872 0.85423 0.75352 0.90821 0.90578 0.91531 0.91636 0.91637 0.91529 0.90401 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.14 13.67 55.49 0.76 -24.38 16 2 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 3 Si 0.94 21.42 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.37 -11.21 9.65 30.94 0.30 -10.91 16 8 H 0.10 2.92 6.86 -52.48 -0.36 2.56 16 9 O -0.21 -6.15 8.99 -21.76 -0.20 -6.35 16 10 C 0.43 11.54 7.83 34.44 0.27 11.81 16 11 O -0.54 -15.26 14.44 -26.59 -0.38 -15.64 16 12 C -0.12 -2.55 5.88 -104.97 -0.62 -3.16 16 13 C -0.06 -1.08 9.17 -39.04 -0.36 -1.44 16 14 C -0.10 -1.53 5.74 -104.60 -0.60 -2.13 16 15 C -0.05 -0.71 5.75 -104.47 -0.60 -1.31 16 16 C -0.16 -2.45 9.52 -39.33 -0.37 -2.83 16 17 C 0.15 2.85 6.72 -38.78 -0.26 2.59 16 18 O -0.48 -8.90 11.61 -40.41 -0.47 -9.37 16 19 C -0.08 -0.80 5.66 -28.03 -0.16 -0.96 16 20 C -0.12 -1.07 5.97 -26.71 -0.16 -1.23 16 21 C -0.12 -1.16 5.98 -26.71 -0.16 -1.32 16 22 C -0.08 -0.96 5.66 -28.03 -0.16 -1.12 16 23 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 24 H 0.14 2.88 7.59 -52.49 -0.40 2.48 16 25 H 0.13 1.58 8.05 -52.49 -0.42 1.15 16 26 H 0.39 5.63 9.06 45.56 0.41 6.04 16 27 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -34.33 293.45 -7.14 -41.48 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.28 Total: 4.42 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.97 Total: -10.96 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.76 Total: -24.38 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.05 Total: -31.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.33 -7.14 -41.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065687223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.379 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds