Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86796 * 119.99658 * 2 1 4 4 H 1.48501 * 109.47472 * 269.99844 * 3 2 1 5 5 H 1.48506 * 109.47232 * 29.99854 * 3 2 1 6 6 H 1.48504 * 109.47136 * 149.99583 * 3 2 1 7 7 C 1.38791 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99877 * 179.97438 * 7 2 1 9 9 O 1.34862 * 120.00367 * 0.02562 * 7 2 1 10 10 C 1.34767 * 117.00205 * 180.02562 * 9 7 2 11 11 O 1.21545 * 120.00279 * 359.97438 * 10 9 7 12 12 C 1.47351 * 120.00123 * 180.02562 * 10 9 7 13 13 C 1.39490 * 120.32587 * 359.97438 * 12 10 9 14 14 C 1.38447 * 120.52148 * 179.97438 * 13 12 10 15 15 C 1.38098 * 119.95265 * 359.82828 * 14 13 12 16 16 C 1.38776 * 120.00821 * 0.30178 * 15 14 13 17 17 C 1.38376 * 120.72880 * 359.77194 * 16 15 14 18 18 O 1.35646 * 120.28218 * 179.97438 * 17 16 15 19 19 C 1.50708 * 122.46123 * 180.67017 * 15 14 13 20 20 C 1.52710 * 110.59859 * 342.15223 * 19 15 14 21 21 C 1.53326 * 108.37590 * 51.25179 * 20 19 15 22 22 C 1.50693 * 117.55243 * 179.77267 * 14 13 12 23 23 H 0.96996 * 120.00491 * 0.02562 * 1 2 3 24 24 H 1.07995 * 119.74021 * 359.96570 * 13 12 10 25 25 H 1.07997 * 119.63515 * 179.77052 * 16 15 14 26 26 H 0.96702 * 113.99768 * 270.02430 * 18 17 16 27 27 H 1.09000 * 109.24499 * 221.86831 * 19 15 14 28 28 H 1.09001 * 109.25319 * 102.44523 * 19 15 14 29 29 H 1.09001 * 109.69004 * 291.52934 * 20 19 15 30 30 H 1.09001 * 109.67905 * 170.97004 * 20 19 15 31 31 H 1.08993 * 109.68229 * 49.68396 * 21 20 19 32 32 H 1.09002 * 109.68276 * 170.20497 * 21 20 19 33 33 H 1.09001 * 109.24884 * 41.98250 * 22 14 13 34 34 H 1.09004 * 109.21340 * 282.55116 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0083 -1.2020 0.0005 8 1 3.0883 -1.2019 0.0001 9 8 1.3341 -2.3699 0.0005 10 6 2.0681 -3.5002 0.0016 11 8 3.2819 -3.4366 0.0021 12 6 1.3992 -4.8131 0.0011 13 6 0.0067 -4.8941 0.0001 14 6 -0.6260 -6.1256 -0.0009 15 6 0.1232 -7.2857 -0.0045 16 6 1.5093 -7.2167 -0.0007 17 6 2.1564 -5.9936 0.0018 18 8 3.5116 -5.9368 0.0060 19 6 -0.5061 -8.6550 -0.0206 20 6 -1.9702 -8.5784 0.4066 21 6 -2.6631 -7.4990 -0.4335 22 6 -2.1329 -6.1351 0.0033 23 1 -0.4851 0.8400 -0.0004 24 1 -0.5826 -3.9891 0.0002 25 1 2.0892 -8.1278 0.0002 26 1 3.9019 -5.9212 0.8907 27 1 0.0348 -9.3071 0.6652 28 1 -0.4468 -9.0660 -1.0285 29 1 -2.0314 -8.3170 1.4630 30 1 -2.4527 -9.5411 0.2376 31 1 -2.4428 -7.6577 -1.4890 32 1 -3.7402 -7.5435 -0.2724 33 1 -2.4990 -5.3708 -0.6823 34 1 -2.4902 -5.9159 1.0095 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065687223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = -138.191520 kcal Electronic energy + Delta-G solvation = -19280.807824 eV Core-core repulsion = 16142.327484 eV Total energy + Delta-G solvation = -3138.480340 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.64998 -40.49977 -38.82128 -37.07821 -36.00486 -34.35625 -33.51820 -31.15059 -29.48294 -27.64427 -25.31535 -24.03459 -23.31985 -22.33271 -20.56056 -19.90527 -19.04709 -18.32703 -17.32348 -16.80727 -16.75275 -16.23683 -16.12931 -15.59574 -15.32106 -14.99625 -14.65582 -14.31528 -13.90438 -13.71003 -13.58514 -13.32308 -13.22111 -13.07108 -12.46763 -12.20268 -12.09699 -12.05655 -11.81481 -11.68749 -11.50317 -11.32174 -10.87425 -10.74363 -9.86602 -9.44777 -8.59986 -6.37388 -0.29786 0.20440 1.30935 1.34486 1.48973 1.74377 2.07515 2.56984 2.69341 2.97286 3.19278 3.69365 3.70891 3.95131 4.10950 4.14036 4.20566 4.46874 4.56318 4.61191 4.69519 4.80355 4.89242 4.95113 5.05471 5.08459 5.12573 5.15161 5.28096 5.37194 5.40351 5.53025 5.57589 5.77044 5.84360 6.57703 6.76358 6.84341 7.70455 8.61022 Molecular weight = 262.10amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.005345 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.624679 B = 5237.747625 C = 6223.332595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.003 4.003 3 Si 1.021 2.979 4 H -0.259 1.259 5 H -0.256 1.256 6 H -0.263 1.263 7 C -0.422 4.422 8 H 0.081 0.919 9 O -0.237 6.237 10 C 0.431 3.569 11 O -0.566 6.566 12 C -0.165 4.165 13 C -0.066 4.066 14 C -0.098 4.098 15 C -0.030 4.030 16 C -0.151 4.151 17 C 0.146 3.854 18 O -0.494 6.494 19 C -0.080 4.080 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.082 4.082 23 H 0.281 0.719 24 H 0.117 0.883 25 H 0.166 0.834 26 H 0.404 0.596 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -17.843 1.733 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.203 4.203 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.179 1.179 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.098 0.902 9 O -0.145 6.145 10 C 0.281 3.719 11 O -0.465 6.465 12 C -0.166 4.166 13 C -0.085 4.085 14 C -0.098 4.098 15 C -0.030 4.030 16 C -0.169 4.169 17 C 0.101 3.899 18 O -0.306 6.306 19 C -0.116 4.116 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.119 4.119 23 H 0.090 0.910 24 H 0.135 0.865 25 H 0.184 0.816 26 H 0.263 0.737 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.135 -17.668 1.140 18.737 hybrid contribution 0.875 1.480 0.434 1.773 sum -5.260 -16.188 1.573 17.094 Atomic orbital electron populations 1.70061 1.07673 1.29591 1.46248 1.26602 0.96967 1.02290 0.94484 0.84593 0.77692 0.74206 0.79618 1.18412 1.17942 1.18766 1.21494 0.92276 0.81129 1.54825 0.90173 1.83930 1.39942 1.13967 1.76705 1.21614 0.86058 0.86334 0.77930 1.90589 1.15960 1.88343 1.51590 1.19778 0.95079 0.90054 1.11722 1.21459 0.92194 0.99161 0.95691 1.19893 0.97528 0.90874 1.01465 1.20159 0.92100 0.96350 0.94382 1.21585 0.94828 0.96445 1.04048 1.18589 0.83351 0.90864 0.97147 1.84678 1.15323 1.96046 1.34579 1.20679 0.96545 0.90485 1.03934 1.21586 0.94059 0.99915 0.99953 1.21570 1.00815 0.92738 1.00230 1.20557 0.88583 0.99985 1.02758 0.90968 0.86520 0.81610 0.73672 0.88247 0.88611 0.91623 0.88774 0.91529 0.89547 0.91206 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.34 13.67 21.63 0.30 -54.04 16 2 C 0.00 -0.17 5.49 84.89 0.47 0.30 16 3 Si 1.02 44.73 29.55 68.60 2.03 46.76 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.42 -27.02 9.65 67.95 0.66 -26.37 16 8 H 0.08 5.22 6.86 -2.91 -0.02 5.20 16 9 O -0.24 -15.06 8.99 10.91 0.10 -14.97 16 10 C 0.43 24.69 7.83 70.22 0.55 25.24 16 11 O -0.57 -34.20 14.44 26.66 0.38 -33.81 16 12 C -0.16 -7.48 5.88 -20.09 -0.12 -7.60 16 13 C -0.07 -2.66 9.17 22.62 0.21 -2.45 16 14 C -0.10 -2.89 5.74 -19.85 -0.11 -3.00 16 15 C -0.03 -0.73 5.75 -19.77 -0.11 -0.84 16 16 C -0.15 -4.10 9.52 22.43 0.21 -3.89 16 17 C 0.15 5.47 6.72 22.79 0.15 5.62 16 18 O -0.49 -18.62 11.61 -68.79 -0.80 -19.41 16 19 C -0.08 -1.18 5.66 29.75 0.17 -1.01 16 20 C -0.12 -1.51 5.97 30.61 0.18 -1.33 16 21 C -0.12 -1.82 5.98 30.61 0.18 -1.64 16 22 C -0.08 -1.88 5.66 29.75 0.17 -1.71 16 23 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 24 H 0.12 5.18 7.59 -2.91 -0.02 5.16 16 25 H 0.17 3.28 8.05 -2.91 -0.02 3.26 16 26 H 0.40 11.91 9.06 -74.06 -0.67 11.24 16 27 H 0.10 1.09 8.12 -2.39 -0.02 1.07 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 34 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -80.64 293.45 5.07 -75.57 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.46 Total: 18.59 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 2.60 Total: -18.68 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.30 Total: -54.04 kcal Atomic # 8 Polarization: -67.88 SS G_CDS: -0.32 Total: -68.19 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -80.64 5.07 -75.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065687223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.622 kcal (2) G-P(sol) polarization free energy of solvation -80.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds