Wall clock time and date at job start Mon Mar 30 2020 04:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00019 * 2 1 4 4 H 1.48499 * 109.47077 * 269.99674 * 3 2 1 5 5 H 1.48506 * 109.46859 * 29.99719 * 3 2 1 6 6 H 1.48494 * 109.47060 * 149.99730 * 3 2 1 7 7 C 1.37878 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00573 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99873 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40369 * 66.46150 * 9 7 2 11 11 O 1.42101 * 106.40006 * 293.54107 * 9 7 2 12 12 N 1.65596 * 107.21689 * 179.97438 * 9 7 2 13 13 C 1.46505 * 119.99941 * 65.00216 * 12 9 7 14 14 C 1.52997 * 109.47212 * 164.99768 * 13 12 9 15 15 N 1.46902 * 109.47094 * 59.99516 * 14 13 12 16 16 C 1.53006 * 109.47127 * 300.00138 * 14 13 12 17 17 C 1.52997 * 109.47127 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47452 * 59.99878 * 17 16 14 19 19 C 1.53006 * 109.46542 * 300.00026 * 18 17 16 20 20 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 21 21 H 0.97000 * 120.00257 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00145 * 244.99335 * 12 9 7 23 23 H 1.09002 * 109.47068 * 284.99828 * 13 12 9 24 24 H 1.09001 * 109.47372 * 44.99916 * 13 12 9 25 25 H 1.00896 * 111.00210 * 300.00180 * 15 14 13 26 26 H 1.00906 * 110.99720 * 63.95766 * 15 14 13 27 27 H 1.09001 * 109.47002 * 299.99574 * 16 14 13 28 28 H 1.08993 * 109.46955 * 60.00011 * 16 14 13 29 29 H 1.09001 * 109.47289 * 299.99953 * 17 16 14 30 30 H 1.09002 * 109.47153 * 179.97438 * 17 16 14 31 31 H 1.09000 * 109.47360 * 180.02562 * 18 17 16 32 32 H 1.08998 * 109.47061 * 59.99332 * 18 17 16 33 33 H 1.09001 * 109.47369 * 299.99416 * 19 18 17 34 34 H 1.09004 * 109.46785 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47103 * 300.00247 * 20 14 13 36 36 H 1.09001 * 109.47066 * 60.00169 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7957 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2483 -3.9354 0.0005 13 6 3.1394 -4.1088 1.1505 14 6 3.8048 -5.4846 1.0772 15 7 4.5825 -5.5868 -0.1649 16 6 2.7294 -6.5728 1.0965 17 6 3.3948 -7.9486 1.0226 18 6 4.3257 -8.1302 2.2232 19 6 5.4010 -7.0418 2.2037 20 6 4.7358 -5.6655 2.2777 21 1 -0.4850 0.8400 -0.0004 22 1 2.3172 -4.5325 -0.7607 23 1 3.9055 -3.3335 1.1367 24 1 2.5623 -4.0330 2.0720 25 1 3.9899 -5.4706 -0.9732 26 1 5.3401 -4.9204 -0.1730 27 1 2.1523 -6.4970 2.0181 28 1 2.0666 -6.4438 0.2410 29 1 3.9716 -8.0242 0.1008 30 1 2.6287 -8.7239 1.0368 31 1 4.8001 -9.1101 2.1702 32 1 3.7489 -8.0545 3.1449 33 1 5.9779 -7.1174 1.2819 34 1 6.0640 -7.1709 3.0592 35 1 5.5018 -4.8902 2.2634 36 1 4.1590 -5.5895 3.1994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083920851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:25 Heat of formation + Delta-G solvation = -117.937875 kcal Electronic energy + Delta-G solvation = -18858.524487 eV Core-core repulsion = 15888.659113 eV Total energy + Delta-G solvation = -2969.865374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.35401 -35.26350 -34.82973 -33.96202 -33.11231 -31.88414 -30.64450 -28.62339 -26.15859 -24.99311 -22.55568 -20.89204 -19.09264 -18.85895 -17.50471 -16.36991 -15.78968 -15.54074 -15.04185 -14.74879 -14.47765 -14.07016 -13.84840 -13.40151 -13.30651 -12.74930 -12.28178 -12.03989 -12.01050 -11.75100 -11.69830 -11.26004 -11.23409 -10.91751 -10.62872 -10.57314 -10.47264 -10.30632 -10.20799 -10.04460 -9.90434 -9.27022 -9.04621 -8.59091 -8.45877 -6.72244 -5.34401 2.32350 3.04620 3.11577 3.17461 4.03888 4.56282 4.62200 4.66212 4.81411 4.90685 4.97438 5.27385 5.35776 5.42651 5.55818 5.68605 5.72588 5.74168 5.87532 5.99609 6.03781 6.09414 6.14419 6.25290 6.33239 6.37797 6.39765 6.49503 6.60375 6.78150 7.27223 7.29727 7.56277 7.84716 7.94151 8.86724 10.21963 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034471 B = 0.005765 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.077457 B = 4855.605129 C = 5248.448377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.100 0.900 9 S 2.717 3.283 10 O -1.008 7.008 11 O -1.007 7.007 12 N -1.135 6.135 13 C 0.097 3.903 14 C 0.114 3.886 15 N -0.831 5.831 16 C -0.106 4.106 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.106 4.106 21 H 0.291 0.709 22 H 0.397 0.603 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.339 0.661 26 H 0.339 0.661 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.328 -10.890 2.951 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.154 5.154 8 H 0.118 0.882 9 S 2.817 3.183 10 O -0.998 6.998 11 O -0.997 6.997 12 N -0.891 5.891 13 C -0.032 4.032 14 C 0.020 3.980 15 N -0.361 5.361 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.146 4.146 20 C -0.145 4.145 21 H 0.101 0.899 22 H 0.229 0.771 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.345 -11.576 3.368 15.254 hybrid contribution 0.669 2.115 -0.497 2.273 sum 10.014 -9.461 2.871 14.073 Atomic orbital electron populations 1.69894 1.06782 1.30739 1.40046 1.24749 0.94465 1.00843 0.88515 0.86158 0.80110 0.80094 0.79142 1.19216 1.19951 1.18750 1.30540 1.05971 1.11971 1.66929 0.88152 1.00341 0.72039 0.73187 0.72771 1.93373 1.73139 1.87668 1.45661 1.93355 1.72813 1.87499 1.45987 1.56000 1.55959 1.50935 1.26218 1.21853 0.93969 0.97378 0.89973 1.20990 0.93019 0.93097 0.90939 1.59055 1.14776 1.58652 1.03666 1.21528 0.96565 0.93870 1.02455 1.21428 0.98228 0.96059 0.99129 1.21501 0.97310 0.98158 0.98424 1.21400 0.97500 0.93981 1.01730 1.21534 0.98296 0.97730 0.96910 0.89874 0.77141 0.92357 0.90433 0.84695 0.84812 0.91506 0.91766 0.90795 0.93031 0.92713 0.92650 0.90787 0.93027 0.91943 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.87 13.19 55.43 0.73 -24.14 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -1.02 -27.79 9.72 30.60 0.30 -27.49 16 8 H 0.10 2.49 7.81 -52.49 -0.41 2.08 16 9 S 2.72 70.91 5.02 -107.50 -0.54 70.37 16 10 O -1.01 -29.34 18.02 -57.17 -1.03 -30.37 16 11 O -1.01 -29.21 17.49 -57.17 -1.00 -30.21 16 12 N -1.14 -21.48 5.37 -10.61 -0.06 -21.53 16 13 C 0.10 1.59 5.32 -4.04 -0.02 1.57 16 14 C 0.11 1.45 0.57 -131.60 -0.08 1.38 16 15 N -0.83 -9.44 7.34 0.74 0.01 -9.43 16 16 C -0.11 -1.38 4.72 -26.73 -0.13 -1.51 16 17 C -0.11 -1.24 5.77 -26.73 -0.15 -1.39 16 18 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 19 C -0.11 -1.10 5.77 -26.70 -0.15 -1.25 16 20 C -0.11 -1.19 4.86 -26.71 -0.13 -1.32 16 21 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 22 H 0.40 6.52 6.61 -34.47 -0.23 6.29 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 25 H 0.34 3.92 7.43 -39.29 -0.29 3.63 16 26 H 0.34 3.58 8.98 -39.29 -0.35 3.23 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.89 7.19 -51.93 -0.37 0.51 16 29 H 0.07 0.85 7.60 -51.93 -0.39 0.45 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.78 7.60 -51.93 -0.39 0.39 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -33.94 299.83 -8.38 -42.31 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.37 Total: 10.78 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -0.62 Total: -27.77 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.68 Total: -55.11 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -2.03 Total: -60.58 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 70.91 SS G_CDS: -0.54 Total: 70.37 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.94 -8.38 -42.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083920851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.625 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds