Wall clock time and date at job start Mon Mar 30 2020 04:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00019 * 2 1 4 4 H 1.48499 * 109.47077 * 269.99674 * 3 2 1 5 5 H 1.48506 * 109.46859 * 29.99719 * 3 2 1 6 6 H 1.48494 * 109.47060 * 149.99730 * 3 2 1 7 7 C 1.37878 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00573 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99873 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40369 * 66.46150 * 9 7 2 11 11 O 1.42101 * 106.40006 * 293.54107 * 9 7 2 12 12 N 1.65596 * 107.21689 * 179.97438 * 9 7 2 13 13 C 1.46505 * 119.99941 * 65.00216 * 12 9 7 14 14 C 1.52997 * 109.47212 * 164.99768 * 13 12 9 15 15 N 1.46902 * 109.47094 * 59.99516 * 14 13 12 16 16 C 1.53006 * 109.47127 * 300.00138 * 14 13 12 17 17 C 1.52997 * 109.47127 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47452 * 59.99878 * 17 16 14 19 19 C 1.53006 * 109.46542 * 300.00026 * 18 17 16 20 20 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 21 21 H 0.97000 * 120.00257 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00145 * 244.99335 * 12 9 7 23 23 H 1.09002 * 109.47068 * 284.99828 * 13 12 9 24 24 H 1.09001 * 109.47372 * 44.99916 * 13 12 9 25 25 H 1.00896 * 111.00210 * 300.00180 * 15 14 13 26 26 H 1.00906 * 110.99720 * 63.95766 * 15 14 13 27 27 H 1.09001 * 109.47002 * 299.99574 * 16 14 13 28 28 H 1.08993 * 109.46955 * 60.00011 * 16 14 13 29 29 H 1.09001 * 109.47289 * 299.99953 * 17 16 14 30 30 H 1.09002 * 109.47153 * 179.97438 * 17 16 14 31 31 H 1.09000 * 109.47360 * 180.02562 * 18 17 16 32 32 H 1.08998 * 109.47061 * 59.99332 * 18 17 16 33 33 H 1.09001 * 109.47369 * 299.99416 * 19 18 17 34 34 H 1.09004 * 109.46785 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47103 * 300.00247 * 20 14 13 36 36 H 1.09001 * 109.47066 * 60.00169 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7957 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2483 -3.9354 0.0005 13 6 3.1394 -4.1088 1.1505 14 6 3.8048 -5.4846 1.0772 15 7 4.5825 -5.5868 -0.1649 16 6 2.7294 -6.5728 1.0965 17 6 3.3948 -7.9486 1.0226 18 6 4.3257 -8.1302 2.2232 19 6 5.4010 -7.0418 2.2037 20 6 4.7358 -5.6655 2.2777 21 1 -0.4850 0.8400 -0.0004 22 1 2.3172 -4.5325 -0.7607 23 1 3.9055 -3.3335 1.1367 24 1 2.5623 -4.0330 2.0720 25 1 3.9899 -5.4706 -0.9732 26 1 5.3401 -4.9204 -0.1730 27 1 2.1523 -6.4970 2.0181 28 1 2.0666 -6.4438 0.2410 29 1 3.9716 -8.0242 0.1008 30 1 2.6287 -8.7239 1.0368 31 1 4.8001 -9.1101 2.1702 32 1 3.7489 -8.0545 3.1449 33 1 5.9779 -7.1174 1.2819 34 1 6.0640 -7.1709 3.0592 35 1 5.5018 -4.8902 2.2634 36 1 4.1590 -5.5895 3.1994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083920851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:25 Heat of formation + Delta-G solvation = -145.797575 kcal Electronic energy + Delta-G solvation = -18859.732574 eV Core-core repulsion = 15888.659113 eV Total energy + Delta-G solvation = -2971.073461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38906 -37.42821 -36.17666 -36.09530 -35.19168 -33.10131 -31.56958 -29.64836 -28.28500 -26.25331 -23.48525 -21.89148 -21.05868 -19.88859 -19.38943 -18.31413 -17.39098 -16.86147 -16.46613 -16.06846 -16.01649 -15.61223 -15.17208 -14.89397 -14.30067 -14.14258 -13.93587 -13.47872 -13.30638 -13.03347 -12.92614 -12.73043 -12.66152 -12.53267 -12.45720 -12.33934 -12.31901 -11.82822 -11.37251 -11.27024 -11.05710 -11.01260 -10.82316 -10.22395 -9.54555 -8.77627 -7.50917 0.33118 1.33044 1.33295 1.49370 2.18950 2.56213 2.96030 3.55904 3.70543 3.77924 3.86452 3.99449 4.32563 4.36838 4.44619 4.53988 4.63568 4.66090 4.73600 4.77323 4.85321 5.00194 5.08847 5.18892 5.21272 5.27593 5.42247 5.45754 5.48152 5.48974 5.74266 5.86704 6.20782 6.38506 6.64625 6.76081 8.18876 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034471 B = 0.005765 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.077457 B = 4855.605129 C = 5248.448377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.992 3.008 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.247 1.247 7 C -1.039 5.039 8 H 0.121 0.879 9 S 2.723 3.277 10 O -1.047 7.047 11 O -1.045 7.045 12 N -1.116 6.116 13 C 0.089 3.911 14 C 0.125 3.875 15 N -0.822 5.822 16 C -0.112 4.112 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.103 4.103 20 C -0.107 4.107 21 H 0.299 0.701 22 H 0.410 0.590 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.339 0.661 26 H 0.347 0.653 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.853 -10.904 3.170 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.145 4.145 3 Si 0.810 3.190 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.170 1.170 7 C -1.173 5.173 8 H 0.139 0.861 9 S 2.824 3.176 10 O -1.037 7.037 11 O -1.034 7.034 12 N -0.877 5.877 13 C -0.039 4.039 14 C 0.030 3.970 15 N -0.353 5.353 16 C -0.150 4.150 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.145 4.145 21 H 0.109 0.891 22 H 0.245 0.755 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.152 0.848 26 H 0.161 0.839 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.872 -11.621 3.577 16.994 hybrid contribution -0.112 2.029 -0.557 2.107 sum 11.760 -9.593 3.020 15.474 Atomic orbital electron populations 1.69993 1.08835 1.32355 1.41437 1.26047 0.95380 1.05509 0.87555 0.85096 0.79116 0.74734 0.80005 1.17935 1.18816 1.16996 1.30886 1.07138 1.12560 1.66679 0.86139 0.99785 0.72555 0.73947 0.71358 1.93310 1.74982 1.88452 1.46941 1.93301 1.74565 1.88267 1.47315 1.55300 1.55210 1.49460 1.27712 1.22180 0.93443 1.00321 0.87978 1.20910 0.93154 0.90515 0.92450 1.59047 1.14552 1.58730 1.02935 1.21575 0.96634 0.95421 1.01389 1.21385 0.98448 0.94733 0.99723 1.21516 0.97152 0.98995 0.97730 1.21367 0.97441 0.92895 1.02346 1.21566 0.98145 0.99043 0.95778 0.89115 0.75472 0.91387 0.92162 0.84767 0.83901 0.92498 0.93076 0.90826 0.92570 0.91303 0.92727 0.90854 0.91561 0.90978 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.51 13.19 21.45 0.28 -53.23 16 2 C 0.07 3.76 5.46 84.66 0.46 4.22 16 3 Si 0.99 40.90 29.54 68.60 2.03 42.93 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -1.04 -56.39 9.72 67.73 0.66 -55.73 16 8 H 0.12 5.82 7.81 -2.91 -0.02 5.79 16 9 S 2.72 144.99 5.02 -56.49 -0.28 144.70 16 10 O -1.05 -62.56 18.02 -128.00 -2.31 -64.87 16 11 O -1.04 -62.52 17.49 -128.00 -2.24 -64.76 16 12 N -1.12 -42.26 5.37 -187.48 -1.01 -43.27 16 13 C 0.09 2.87 5.32 86.38 0.46 3.32 16 14 C 0.12 3.01 0.57 3.53 0.00 3.01 16 15 N -0.82 -17.05 7.34 -151.56 -1.11 -18.16 16 16 C -0.11 -2.84 4.72 30.60 0.14 -2.70 16 17 C -0.11 -2.18 5.77 30.60 0.18 -2.00 16 18 C -0.12 -2.09 5.92 30.60 0.18 -1.91 16 19 C -0.10 -1.80 5.77 30.61 0.18 -1.62 16 20 C -0.11 -2.18 4.86 30.61 0.15 -2.03 16 21 H 0.30 16.04 8.31 -92.71 -0.77 15.27 16 22 H 0.41 13.39 6.61 -96.75 -0.64 12.75 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 24 H 0.06 2.15 7.75 -2.39 -0.02 2.14 16 25 H 0.34 7.27 7.43 -89.70 -0.67 6.60 16 26 H 0.35 6.46 8.98 -89.69 -0.81 5.65 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.40 7.19 -2.39 -0.02 1.39 16 29 H 0.07 1.54 7.60 -2.39 -0.02 1.52 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.32 7.60 -2.39 -0.02 1.30 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.67 299.83 -3.24 -76.91 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -1.01 Total: 35.17 kcal Atomic # 6 Polarization: -57.84 SS G_CDS: 2.41 Total: -55.43 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -1.84 Total: -114.65 kcal Atomic # 8 Polarization: -125.08 SS G_CDS: -4.55 Total: -129.63 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 144.99 SS G_CDS: -0.28 Total: 144.70 kcal Total: -73.67 -3.24 -76.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083920851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.886 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds