Wall clock time and date at job start Mon Mar 30 2020 04:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99783 * 2 1 4 4 H 1.48502 * 109.47080 * 269.99682 * 3 2 1 5 5 H 1.48504 * 109.47175 * 29.99744 * 3 2 1 6 6 H 1.48503 * 109.46992 * 149.99395 * 3 2 1 7 7 C 1.37875 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00167 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99930 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40416 * 66.45937 * 9 7 2 11 11 O 1.42102 * 106.40140 * 293.53881 * 9 7 2 12 12 N 1.65602 * 107.21791 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99856 * 65.00222 * 12 9 7 14 14 H 1.09005 * 108.76698 * 333.51173 * 13 12 9 15 15 C 1.50474 * 108.87966 * 92.01964 * 13 12 9 16 16 C 1.54238 * 108.51819 * 214.93204 * 15 13 12 17 17 C 1.45551 * 112.40673 * 280.01147 * 16 15 13 18 18 C 1.54237 * 112.40448 * 61.93515 * 17 16 15 19 19 C 1.50476 * 108.52546 * 280.01542 * 18 17 16 20 20 C 1.54065 * 108.87575 * 215.00334 * 13 12 9 21 21 H 1.08991 * 108.81620 * 76.64322 * 20 13 12 22 22 N 1.46907 * 108.81055 * 318.35927 * 20 13 12 23 23 H 0.96997 * 120.00037 * 0.02562 * 1 2 3 24 24 H 0.96991 * 120.00465 * 244.99818 * 12 9 7 25 25 H 1.08997 * 109.62403 * 334.64309 * 15 13 12 26 26 H 1.08997 * 109.62470 * 95.22401 * 15 13 12 27 27 H 1.09000 * 108.89895 * 40.76149 * 16 15 13 28 28 H 1.08997 * 108.89275 * 159.35600 * 16 15 13 29 29 H 1.08999 * 108.88945 * 301.18194 * 17 16 15 30 30 H 1.08992 * 108.89293 * 182.69068 * 17 16 15 31 31 H 1.09003 * 109.62811 * 160.30361 * 18 17 16 32 32 H 1.09001 * 109.62759 * 39.72769 * 18 17 16 33 33 H 1.09003 * 108.87392 * 214.92751 * 19 18 17 34 34 H 1.08997 * 108.87875 * 333.47318 * 19 18 17 35 35 H 1.00900 * 110.99812 * 176.70660 * 22 20 13 36 36 H 1.00899 * 111.00329 * 300.66849 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4510 -2.7950 1.2501 12 7 2.2484 -3.9354 0.0005 13 6 3.1394 -4.1088 1.1505 14 1 3.2588 -3.1472 1.6498 15 6 2.5108 -5.0815 2.1112 16 6 2.8660 -4.6492 3.5485 17 6 4.2068 -5.0618 3.9366 18 6 5.2972 -4.4254 3.0507 19 6 5.3800 -5.2006 1.7636 20 6 4.5160 -4.5834 0.6472 21 1 5.0473 -3.7322 0.2215 22 7 4.3149 -5.5876 -0.4060 23 1 -0.4850 0.8400 -0.0004 24 1 2.3173 -4.5325 -0.7607 25 1 1.4284 -5.0743 1.9835 26 1 2.8979 -6.0830 1.9238 27 1 2.7969 -3.5636 3.6179 28 1 2.1481 -5.0930 4.2382 29 1 4.2782 -6.1467 3.8599 30 1 4.3795 -4.7709 4.9727 31 1 6.2572 -4.4666 3.5653 32 1 5.0370 -3.3886 2.8376 33 1 6.4185 -5.2252 1.4330 34 1 5.0436 -6.2214 1.9444 35 1 5.1969 -5.8826 -0.7974 36 1 3.7916 -6.3769 -0.0579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:04 Heat of formation + Delta-G solvation = -108.157025 kcal Electronic energy + Delta-G solvation = -19317.414572 eV Core-core repulsion = 16347.973328 eV Total energy + Delta-G solvation = -2969.441244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27988 -35.06182 -34.67014 -33.80943 -33.42583 -32.95945 -30.36028 -28.23527 -26.05488 -23.91799 -23.51804 -20.39340 -19.16458 -18.75278 -17.33069 -16.66554 -15.97455 -15.28661 -14.84428 -14.77052 -14.39885 -14.09593 -13.87453 -13.22002 -12.99345 -12.82469 -12.46809 -12.24751 -11.93917 -11.78866 -11.18898 -11.16115 -10.86882 -10.66347 -10.56606 -10.48569 -10.28675 -10.21218 -10.13180 -10.03632 -9.79715 -9.18083 -8.86185 -8.55623 -8.30857 -6.62522 -5.23125 2.51340 3.10368 3.17147 3.23267 4.11856 4.58906 4.67817 4.72016 4.79904 4.98663 5.11034 5.19206 5.41179 5.43036 5.49181 5.58315 5.80270 5.88481 5.97186 6.00813 6.10265 6.16077 6.24121 6.25903 6.41451 6.48925 6.64101 6.68195 6.84124 7.05562 7.28490 7.41300 7.54420 8.04197 8.28993 8.96771 10.31360 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.007637 C = 0.007125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.315406 B = 3665.603297 C = 3928.702406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.100 0.900 9 S 2.716 3.284 10 O -1.012 7.012 11 O -1.008 7.008 12 N -1.125 6.125 13 C 0.172 3.828 14 H 0.085 0.915 15 C -0.130 4.130 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.146 4.146 20 C 0.087 3.913 21 H 0.083 0.917 22 N -0.839 5.839 23 H 0.289 0.711 24 H 0.409 0.591 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.338 0.662 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.220 -9.383 5.181 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.084 4.084 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.118 0.882 9 S 2.816 3.184 10 O -1.002 7.002 11 O -0.998 6.998 12 N -0.880 5.880 13 C 0.063 3.937 14 H 0.103 0.897 15 C -0.169 4.169 16 C -0.161 4.161 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.186 4.186 20 C -0.026 4.026 21 H 0.101 0.899 22 N -0.368 5.368 23 H 0.100 0.900 24 H 0.243 0.757 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.658 -8.739 4.930 13.927 hybrid contribution 1.683 0.362 0.292 1.746 sum 11.341 -8.378 5.222 15.036 Atomic orbital electron populations 1.69904 1.06748 1.30529 1.40431 1.24725 0.94407 1.00698 0.88596 0.86223 0.80177 0.80361 0.79117 1.19273 1.20060 1.18735 1.30627 1.06027 1.12246 1.66519 0.88180 1.00327 0.72187 0.73188 0.72740 1.93363 1.73365 1.87726 1.45735 1.93354 1.72986 1.87620 1.45852 1.55975 1.54405 1.50849 1.26808 1.20375 0.87888 0.99168 0.86305 0.89707 1.21922 1.02301 0.98544 0.94181 1.20458 0.96282 1.02550 0.96791 1.20507 0.95385 1.00084 0.99125 1.21342 0.98494 1.00662 0.95404 1.22202 0.99828 1.00057 0.96560 1.22207 0.95246 0.95293 0.89892 0.89890 1.58739 1.24346 1.17689 1.35985 0.90032 0.75703 0.90017 0.92547 0.91161 0.92217 0.92710 0.92556 0.92209 0.90904 0.92484 0.92127 0.84959 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.29 13.19 55.43 0.73 -24.56 16 2 C 0.13 3.77 5.46 -17.82 -0.10 3.68 16 3 Si 0.92 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -1.02 -28.42 9.52 30.60 0.29 -28.13 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.72 72.92 4.93 -107.50 -0.53 72.39 16 10 O -1.01 -30.54 18.02 -57.17 -1.03 -31.57 16 11 O -1.01 -29.18 17.14 -57.17 -0.98 -30.16 16 12 N -1.12 -22.79 5.26 -5.49 -0.03 -22.82 16 13 C 0.17 2.92 1.91 -68.63 -0.13 2.78 16 14 H 0.08 1.57 6.28 -51.93 -0.33 1.25 16 15 C -0.13 -2.02 5.15 -27.35 -0.14 -2.16 16 16 C -0.12 -1.72 5.26 -29.60 -0.16 -1.88 16 17 C -0.11 -1.28 5.26 -29.60 -0.16 -1.43 16 18 C -0.12 -1.33 5.61 -27.34 -0.15 -1.48 16 19 C -0.15 -1.55 4.87 -27.43 -0.13 -1.68 16 20 C 0.09 1.15 3.06 -66.59 -0.20 0.95 16 21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 22 N -0.84 -9.92 7.78 -3.72 -0.03 -9.95 16 23 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 24 H 0.41 7.69 7.57 -34.47 -0.26 7.43 16 25 H 0.08 1.48 7.39 -51.93 -0.38 1.10 16 26 H 0.06 0.73 6.29 -51.93 -0.33 0.40 16 27 H 0.07 1.11 7.47 -51.93 -0.39 0.72 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.56 7.47 -51.93 -0.39 0.17 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.90 6.98 -51.93 -0.36 0.54 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 35 H 0.34 3.22 9.03 -39.29 -0.35 2.87 16 36 H 0.34 3.66 8.21 -39.29 -0.32 3.34 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -34.59 293.36 -8.46 -43.05 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.11 Total: 12.73 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: -0.88 Total: -29.36 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.67 Total: -57.33 kcal Atomic # 8 Polarization: -59.73 SS G_CDS: -2.01 Total: -61.74 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 72.92 SS G_CDS: -0.53 Total: 72.39 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.59 -8.46 -43.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.110 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds