Wall clock time and date at job start Mon Mar 30 2020 04:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99783 * 2 1 4 4 H 1.48502 * 109.47080 * 269.99682 * 3 2 1 5 5 H 1.48504 * 109.47175 * 29.99744 * 3 2 1 6 6 H 1.48503 * 109.46992 * 149.99395 * 3 2 1 7 7 C 1.37875 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00167 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99930 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40416 * 66.45937 * 9 7 2 11 11 O 1.42102 * 106.40140 * 293.53881 * 9 7 2 12 12 N 1.65602 * 107.21791 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99856 * 65.00222 * 12 9 7 14 14 H 1.09005 * 108.76698 * 333.51173 * 13 12 9 15 15 C 1.50474 * 108.87966 * 92.01964 * 13 12 9 16 16 C 1.54238 * 108.51819 * 214.93204 * 15 13 12 17 17 C 1.45551 * 112.40673 * 280.01147 * 16 15 13 18 18 C 1.54237 * 112.40448 * 61.93515 * 17 16 15 19 19 C 1.50476 * 108.52546 * 280.01542 * 18 17 16 20 20 C 1.54065 * 108.87575 * 215.00334 * 13 12 9 21 21 H 1.08991 * 108.81620 * 76.64322 * 20 13 12 22 22 N 1.46907 * 108.81055 * 318.35927 * 20 13 12 23 23 H 0.96997 * 120.00037 * 0.02562 * 1 2 3 24 24 H 0.96991 * 120.00465 * 244.99818 * 12 9 7 25 25 H 1.08997 * 109.62403 * 334.64309 * 15 13 12 26 26 H 1.08997 * 109.62470 * 95.22401 * 15 13 12 27 27 H 1.09000 * 108.89895 * 40.76149 * 16 15 13 28 28 H 1.08997 * 108.89275 * 159.35600 * 16 15 13 29 29 H 1.08999 * 108.88945 * 301.18194 * 17 16 15 30 30 H 1.08992 * 108.89293 * 182.69068 * 17 16 15 31 31 H 1.09003 * 109.62811 * 160.30361 * 18 17 16 32 32 H 1.09001 * 109.62759 * 39.72769 * 18 17 16 33 33 H 1.09003 * 108.87392 * 214.92751 * 19 18 17 34 34 H 1.08997 * 108.87875 * 333.47318 * 19 18 17 35 35 H 1.00900 * 110.99812 * 176.70660 * 22 20 13 36 36 H 1.00899 * 111.00329 * 300.66849 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4510 -2.7950 1.2501 12 7 2.2484 -3.9354 0.0005 13 6 3.1394 -4.1088 1.1505 14 1 3.2588 -3.1472 1.6498 15 6 2.5108 -5.0815 2.1112 16 6 2.8660 -4.6492 3.5485 17 6 4.2068 -5.0618 3.9366 18 6 5.2972 -4.4254 3.0507 19 6 5.3800 -5.2006 1.7636 20 6 4.5160 -4.5834 0.6472 21 1 5.0473 -3.7322 0.2215 22 7 4.3149 -5.5876 -0.4060 23 1 -0.4850 0.8400 -0.0004 24 1 2.3173 -4.5325 -0.7607 25 1 1.4284 -5.0743 1.9835 26 1 2.8979 -6.0830 1.9238 27 1 2.7969 -3.5636 3.6179 28 1 2.1481 -5.0930 4.2382 29 1 4.2782 -6.1467 3.8599 30 1 4.3795 -4.7709 4.9727 31 1 6.2572 -4.4666 3.5653 32 1 5.0370 -3.3886 2.8376 33 1 6.4185 -5.2252 1.4330 34 1 5.0436 -6.2214 1.9444 35 1 5.1969 -5.8826 -0.7974 36 1 3.7916 -6.3769 -0.0579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:04 Heat of formation + Delta-G solvation = -137.477891 kcal Electronic energy + Delta-G solvation = -19318.686020 eV Core-core repulsion = 16347.973328 eV Total energy + Delta-G solvation = -2970.712693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40928 -37.30242 -36.06011 -35.84772 -35.17519 -34.59748 -31.50781 -29.43389 -28.24374 -25.06819 -24.58227 -21.46992 -20.91879 -20.22811 -19.24489 -18.28311 -17.69649 -16.89156 -16.45677 -16.04474 -15.77809 -15.67060 -15.30773 -14.89303 -14.17649 -13.99815 -13.85218 -13.55055 -13.45148 -13.27765 -13.01528 -12.88606 -12.45194 -12.40471 -12.31327 -12.30193 -11.88019 -11.53347 -11.41001 -11.26472 -11.24065 -11.12465 -10.90183 -10.04672 -9.46007 -8.73430 -7.45677 0.46422 1.32881 1.33684 1.49302 2.21277 2.59325 3.05268 3.66232 3.68630 3.81034 3.89448 4.08447 4.14485 4.26575 4.37305 4.41977 4.51007 4.61211 4.77936 4.85605 4.97298 5.03639 5.15235 5.23724 5.28267 5.32644 5.36394 5.41342 5.50443 5.57655 5.63076 5.91797 6.32627 6.64911 6.77238 6.79933 8.22723 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.007637 C = 0.007125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.315406 B = 3665.603297 C = 3928.702406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.246 1.246 7 C -1.040 5.040 8 H 0.116 0.884 9 S 2.720 3.280 10 O -1.053 7.053 11 O -1.040 7.040 12 N -1.109 6.109 13 C 0.163 3.837 14 H 0.062 0.938 15 C -0.130 4.130 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.124 4.124 19 C -0.137 4.137 20 C 0.095 3.905 21 H 0.073 0.927 22 N -0.848 5.848 23 H 0.298 0.702 24 H 0.418 0.582 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.355 0.645 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.111 -9.941 5.735 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.806 3.194 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.169 1.169 7 C -1.174 5.174 8 H 0.134 0.866 9 S 2.820 3.180 10 O -1.044 7.044 11 O -1.029 7.029 12 N -0.869 5.869 13 C 0.056 3.944 14 H 0.080 0.920 15 C -0.169 4.169 16 C -0.159 4.159 17 C -0.149 4.149 18 C -0.162 4.162 19 C -0.177 4.177 20 C -0.019 4.019 21 H 0.091 0.909 22 N -0.379 5.379 23 H 0.108 0.892 24 H 0.254 0.746 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.169 0.831 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.553 -9.333 5.481 16.575 hybrid contribution 0.772 0.454 0.127 0.905 sum 13.325 -8.879 5.608 16.966 Atomic orbital electron populations 1.69999 1.08781 1.32196 1.41697 1.26013 0.95356 1.05365 0.87606 0.85169 0.79261 0.74966 0.80023 1.18001 1.18625 1.16932 1.30948 1.06991 1.12983 1.66436 0.86562 0.99853 0.72748 0.73967 0.71413 1.93293 1.75279 1.88553 1.47240 1.93304 1.74556 1.88288 1.46798 1.55389 1.53977 1.49207 1.28325 1.20683 0.89593 0.98931 0.85235 0.91957 1.21881 1.00168 0.99964 0.94865 1.20462 0.98650 1.00829 0.95914 1.20478 0.93360 1.01247 0.99783 1.21384 0.99407 0.99503 0.95892 1.22125 1.00284 1.00217 0.95086 1.22031 0.92768 0.95749 0.91332 0.90917 1.58626 1.25723 1.17874 1.35721 0.89215 0.74611 0.93390 0.89284 0.93934 0.91779 0.90707 0.91396 0.89940 0.92948 0.90323 0.90620 0.83053 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.86 13.19 21.45 0.28 -54.57 16 2 C 0.07 3.94 5.46 84.65 0.46 4.40 16 3 Si 0.99 42.21 29.54 68.60 2.03 44.23 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -1.04 -58.91 9.52 67.73 0.65 -58.27 16 8 H 0.12 5.96 7.81 -2.91 -0.02 5.94 16 9 S 2.72 151.36 4.93 -56.49 -0.28 151.08 16 10 O -1.05 -66.05 18.02 -128.00 -2.31 -68.36 16 11 O -1.04 -63.03 17.14 -128.00 -2.19 -65.23 16 12 N -1.11 -45.69 5.26 -171.29 -0.90 -46.59 16 13 C 0.16 5.53 1.91 44.53 0.09 5.62 16 14 H 0.06 2.39 6.28 -2.38 -0.01 2.37 16 15 C -0.13 -3.97 5.15 30.20 0.16 -3.81 16 16 C -0.12 -3.32 5.26 28.74 0.15 -3.17 16 17 C -0.11 -2.21 5.26 28.74 0.15 -2.06 16 18 C -0.12 -2.37 5.61 30.20 0.17 -2.20 16 19 C -0.14 -2.41 4.87 30.14 0.15 -2.26 16 20 C 0.09 2.33 3.06 45.64 0.14 2.47 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 N -0.85 -18.01 7.78 -165.68 -1.29 -19.30 16 23 H 0.30 16.37 8.31 -92.71 -0.77 15.60 16 24 H 0.42 15.75 7.57 -96.75 -0.73 15.02 16 25 H 0.05 1.79 7.39 -2.39 -0.02 1.77 16 26 H 0.09 2.09 6.29 -2.39 -0.02 2.08 16 27 H 0.04 1.38 7.47 -2.39 -0.02 1.37 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.23 7.47 -2.39 -0.02 1.21 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.23 6.98 -2.39 -0.02 1.21 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.14 6.57 -2.39 -0.02 1.13 16 35 H 0.35 5.65 9.03 -89.69 -0.81 4.84 16 36 H 0.35 6.52 8.21 -89.69 -0.74 5.78 16 Total: -1.00 -77.39 293.36 -3.72 -81.11 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -1.16 Total: 36.91 kcal Atomic # 6 Polarization: -61.39 SS G_CDS: 2.11 Total: -59.28 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -1.91 Total: -120.46 kcal Atomic # 8 Polarization: -129.09 SS G_CDS: -4.50 Total: -133.59 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 151.36 SS G_CDS: -0.28 Total: 151.08 kcal Total: -77.39 -3.72 -81.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.370 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds