Wall clock time and date at job start Mon Mar 30 2020 04:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48499 * 109.47127 * 270.00497 * 3 2 1 5 5 H 1.48507 * 109.46970 * 30.00022 * 3 2 1 6 6 H 1.48497 * 109.47652 * 150.00272 * 3 2 1 7 7 C 1.37881 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99919 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99765 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40308 * 66.46252 * 9 7 2 11 11 O 1.42095 * 106.40079 * 293.53842 * 9 7 2 12 12 N 1.65603 * 107.21721 * 180.02562 * 9 7 2 13 13 C 1.46927 * 120.62886 * 254.74637 * 12 9 7 14 14 C 1.53190 * 108.77624 * 233.62877 * 13 12 9 15 15 C 1.53048 * 109.31095 * 305.36654 * 14 13 12 16 16 C 1.53044 * 109.53649 * 61.36354 * 15 14 13 17 17 C 1.46923 * 120.63310 * 74.76460 * 12 9 7 18 18 H 1.09003 * 109.58768 * 246.30612 * 17 12 9 19 19 C 1.53000 * 109.58527 * 6.58299 * 17 12 9 20 20 C 1.53002 * 109.47358 * 186.35584 * 19 17 12 21 21 N 1.46894 * 109.47514 * 177.52885 * 20 19 17 22 22 H 0.97003 * 119.99945 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.58837 * 353.41755 * 13 12 9 24 24 H 1.09002 * 109.58862 * 113.69811 * 13 12 9 25 25 H 1.08998 * 109.49520 * 65.31290 * 14 13 12 26 26 H 1.08995 * 109.50331 * 185.38237 * 14 13 12 27 27 H 1.09003 * 109.45853 * 181.38481 * 15 14 13 28 28 H 1.09000 * 109.45967 * 301.35519 * 15 14 13 29 29 H 1.09000 * 109.48954 * 178.68593 * 16 15 14 30 30 H 1.08996 * 109.49757 * 58.59056 * 16 15 14 31 31 H 1.09002 * 109.47222 * 66.35829 * 19 17 12 32 32 H 1.09002 * 109.47657 * 306.36137 * 19 17 12 33 33 H 1.09000 * 109.47228 * 297.53614 * 20 19 17 34 34 H 1.09000 * 109.46696 * 57.52902 * 20 19 17 35 35 H 1.00895 * 111.00239 * 180.02562 * 21 20 19 36 36 H 1.00904 * 111.00249 * 303.95795 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2482 -3.9354 -0.0005 13 6 2.5125 -4.7108 -1.2203 14 6 2.3615 -6.2011 -0.8996 15 6 3.2670 -6.5590 0.2813 16 6 2.8440 -5.7546 1.5127 17 6 3.0005 -4.2593 1.2192 18 1 4.0542 -4.0217 1.0726 19 6 2.4500 -3.4460 2.3924 20 6 3.3325 -3.6642 3.6231 21 7 2.8388 -2.8379 4.7326 22 1 -0.4850 0.8401 0.0004 23 1 1.7983 -4.4293 -1.9941 24 1 3.5259 -4.5105 -1.5682 25 1 1.3245 -6.4142 -0.6405 26 1 2.6477 -6.7914 -1.7700 27 1 3.1800 -7.6241 0.4958 28 1 4.3011 -6.3223 0.0307 29 1 3.4743 -6.0272 2.3592 30 1 1.8024 -5.9720 1.7490 31 1 1.4326 -3.7694 2.6131 32 1 2.4461 -2.3878 2.1311 33 1 3.3015 -4.7151 3.9108 34 1 4.3589 -3.3820 3.3886 35 1 3.4057 -2.9641 5.5576 36 1 2.7969 -1.8650 4.4682 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:06 Heat of formation + Delta-G solvation = -98.855156 kcal Electronic energy + Delta-G solvation = -19518.936764 eV Core-core repulsion = 16549.898879 eV Total energy + Delta-G solvation = -2969.037885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.44824 -35.69808 -34.63174 -33.90549 -33.07849 -31.97193 -31.26665 -27.20600 -26.13418 -23.54550 -23.01127 -20.62434 -19.99164 -18.65859 -17.09657 -16.19120 -15.58150 -15.09456 -15.02651 -14.49367 -14.18647 -13.87429 -13.82869 -13.55259 -13.26544 -12.90959 -12.51527 -11.97461 -11.69758 -11.58091 -11.26954 -11.22152 -10.90228 -10.80272 -10.61942 -10.55116 -10.39855 -10.12525 -10.09270 -9.88063 -9.28985 -9.18543 -8.84343 -8.33645 -8.10085 -6.68060 -5.29442 2.32111 3.05775 3.12961 3.18487 4.05336 4.44864 4.65160 4.91616 5.13230 5.17239 5.21694 5.45810 5.54762 5.65525 5.77767 5.82475 5.85437 5.92025 5.99130 6.05468 6.12439 6.20569 6.23745 6.34181 6.39902 6.56288 6.64684 6.85610 6.92781 7.22927 7.33895 7.50210 7.70297 7.75926 7.98821 8.90167 10.25189 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.009746 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.482875 B = 2872.292076 C = 3737.033000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.134 3.866 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.100 0.900 9 S 2.716 3.284 10 O -1.010 7.010 11 O -0.995 6.995 12 N -1.009 6.009 13 C 0.120 3.880 14 C -0.133 4.133 15 C -0.115 4.115 16 C -0.129 4.129 17 C 0.167 3.833 18 H 0.059 0.941 19 C -0.160 4.160 20 C 0.070 3.930 21 N -0.849 5.849 22 H 0.290 0.710 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.018 0.982 35 H 0.333 0.667 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 -8.020 2.947 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.084 4.084 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.153 5.153 8 H 0.118 0.882 9 S 2.817 3.183 10 O -1.000 7.000 11 O -0.986 6.986 12 N -0.845 5.845 13 C -0.007 4.007 14 C -0.172 4.172 15 C -0.153 4.153 16 C -0.168 4.168 17 C 0.060 3.940 18 H 0.077 0.923 19 C -0.198 4.198 20 C -0.062 4.062 21 N -0.378 5.378 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.144 0.856 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.920 -8.509 2.859 11.335 hybrid contribution 2.056 1.701 -0.134 2.671 sum 8.976 -6.808 2.725 11.591 Atomic orbital electron populations 1.69895 1.06719 1.30638 1.40056 1.24717 0.94413 1.00625 0.88617 0.86220 0.80155 0.80345 0.79164 1.19267 1.19957 1.18774 1.30622 1.05993 1.11981 1.66734 0.88184 1.00497 0.72170 0.72937 0.72652 1.93317 1.73038 1.87638 1.46047 1.93389 1.73365 1.87306 1.44498 1.58195 1.59557 1.51728 1.15005 1.21251 1.01523 0.90386 0.87501 1.21897 1.00452 0.96760 0.98124 1.21466 0.99298 0.98972 0.95514 1.21993 1.02187 0.95371 0.97260 1.20684 0.95138 0.94041 0.84127 0.92256 1.22617 1.02337 1.02405 0.92450 1.21746 0.95299 0.97504 0.91609 1.58619 1.59112 1.13246 1.06844 0.89933 0.88782 0.92590 0.91718 0.91542 0.92449 0.92230 0.91578 0.91302 0.86587 0.89227 0.91486 0.96360 0.85614 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.71 13.19 55.43 0.73 -23.98 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -1.02 -27.87 8.47 30.60 0.26 -27.61 16 8 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 9 S 2.72 72.04 4.42 -107.50 -0.48 71.57 16 10 O -1.01 -29.73 16.35 -57.17 -0.93 -30.66 16 11 O -1.00 -28.12 13.76 -57.17 -0.79 -28.91 16 12 N -1.01 -20.78 3.29 -106.48 -0.35 -21.13 16 13 C 0.12 2.10 6.51 -3.71 -0.02 2.07 16 14 C -0.13 -1.90 6.08 -26.61 -0.16 -2.06 16 15 C -0.11 -1.47 5.88 -26.68 -0.16 -1.63 16 16 C -0.13 -1.88 5.03 -26.61 -0.13 -2.01 16 17 C 0.17 2.95 2.96 -67.60 -0.20 2.75 16 18 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.16 -3.08 3.34 -26.73 -0.09 -3.17 16 20 C 0.07 1.06 6.53 -3.83 -0.02 1.03 16 21 N -0.85 -12.67 9.62 -10.37 -0.10 -12.77 16 22 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 23 H 0.09 1.79 6.68 -51.93 -0.35 1.44 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.81 6.98 -51.93 -0.36 0.45 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.12 2.57 6.28 -51.93 -0.33 2.24 16 32 H 0.09 1.98 5.68 -51.93 -0.30 1.69 16 33 H 0.07 0.91 6.89 -51.93 -0.36 0.56 16 34 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.33 3.88 9.08 -39.29 -0.36 3.52 16 36 H 0.35 5.26 8.99 -39.29 -0.35 4.90 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -33.58 293.58 -8.47 -42.04 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.32 Total: 10.95 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -0.63 Total: -27.01 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.28 Total: -57.88 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -1.72 Total: -59.57 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 72.04 SS G_CDS: -0.48 Total: 71.57 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.58 -8.47 -42.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.813 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds