Wall clock time and date at job start Mon Mar 30 2020 04:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48499 * 109.47127 * 270.00497 * 3 2 1 5 5 H 1.48507 * 109.46970 * 30.00022 * 3 2 1 6 6 H 1.48497 * 109.47652 * 150.00272 * 3 2 1 7 7 C 1.37881 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99919 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99765 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40308 * 66.46252 * 9 7 2 11 11 O 1.42095 * 106.40079 * 293.53842 * 9 7 2 12 12 N 1.65603 * 107.21721 * 180.02562 * 9 7 2 13 13 C 1.46927 * 120.62886 * 254.74637 * 12 9 7 14 14 C 1.53190 * 108.77624 * 233.62877 * 13 12 9 15 15 C 1.53048 * 109.31095 * 305.36654 * 14 13 12 16 16 C 1.53044 * 109.53649 * 61.36354 * 15 14 13 17 17 C 1.46923 * 120.63310 * 74.76460 * 12 9 7 18 18 H 1.09003 * 109.58768 * 246.30612 * 17 12 9 19 19 C 1.53000 * 109.58527 * 6.58299 * 17 12 9 20 20 C 1.53002 * 109.47358 * 186.35584 * 19 17 12 21 21 N 1.46894 * 109.47514 * 177.52885 * 20 19 17 22 22 H 0.97003 * 119.99945 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.58837 * 353.41755 * 13 12 9 24 24 H 1.09002 * 109.58862 * 113.69811 * 13 12 9 25 25 H 1.08998 * 109.49520 * 65.31290 * 14 13 12 26 26 H 1.08995 * 109.50331 * 185.38237 * 14 13 12 27 27 H 1.09003 * 109.45853 * 181.38481 * 15 14 13 28 28 H 1.09000 * 109.45967 * 301.35519 * 15 14 13 29 29 H 1.09000 * 109.48954 * 178.68593 * 16 15 14 30 30 H 1.08996 * 109.49757 * 58.59056 * 16 15 14 31 31 H 1.09002 * 109.47222 * 66.35829 * 19 17 12 32 32 H 1.09002 * 109.47657 * 306.36137 * 19 17 12 33 33 H 1.09000 * 109.47228 * 297.53614 * 20 19 17 34 34 H 1.09000 * 109.46696 * 57.52902 * 20 19 17 35 35 H 1.00895 * 111.00239 * 180.02562 * 21 20 19 36 36 H 1.00904 * 111.00249 * 303.95795 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2482 -3.9354 -0.0005 13 6 2.5125 -4.7108 -1.2203 14 6 2.3615 -6.2011 -0.8996 15 6 3.2670 -6.5590 0.2813 16 6 2.8440 -5.7546 1.5127 17 6 3.0005 -4.2593 1.2192 18 1 4.0542 -4.0217 1.0726 19 6 2.4500 -3.4460 2.3924 20 6 3.3325 -3.6642 3.6231 21 7 2.8388 -2.8379 4.7326 22 1 -0.4850 0.8401 0.0004 23 1 1.7983 -4.4293 -1.9941 24 1 3.5259 -4.5105 -1.5682 25 1 1.3245 -6.4142 -0.6405 26 1 2.6477 -6.7914 -1.7700 27 1 3.1800 -7.6241 0.4958 28 1 4.3011 -6.3223 0.0307 29 1 3.4743 -6.0272 2.3592 30 1 1.8024 -5.9720 1.7490 31 1 1.4326 -3.7694 2.6131 32 1 2.4461 -2.3878 2.1311 33 1 3.3015 -4.7151 3.9108 34 1 4.3589 -3.3820 3.3886 35 1 3.4057 -2.9641 5.5576 36 1 2.7969 -1.8650 4.4682 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:06 Heat of formation + Delta-G solvation = -126.693395 kcal Electronic energy + Delta-G solvation = -19520.143921 eV Core-core repulsion = 16549.898879 eV Total energy + Delta-G solvation = -2970.245042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80526 -37.64955 -36.17963 -35.96844 -35.17040 -33.29500 -32.60017 -28.54869 -28.24459 -24.87758 -24.29328 -22.01392 -21.28234 -20.66988 -18.92405 -18.04211 -17.10591 -16.84909 -16.58278 -15.97370 -15.87859 -15.24887 -15.12582 -15.01004 -14.79560 -14.34345 -13.96248 -13.73891 -13.32629 -13.24156 -13.04331 -12.86245 -12.53998 -12.42811 -12.32736 -12.06135 -11.93329 -11.71825 -11.43825 -11.33207 -11.26272 -10.91838 -10.86987 -9.67541 -9.49433 -8.73138 -7.45858 0.36607 1.31185 1.31656 1.47322 2.19035 2.58162 2.81208 3.61568 3.74889 3.92229 4.02459 4.08216 4.18780 4.28328 4.40387 4.48433 4.54265 4.57393 4.64188 4.80862 4.90320 4.92217 4.97016 5.13969 5.18625 5.24347 5.26160 5.38062 5.47699 5.55380 5.69357 5.91013 6.10947 6.30704 6.71316 6.78468 8.21360 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.009746 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.482875 B = 2872.292076 C = 3737.033000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.986 3.014 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.246 1.246 7 C -1.035 5.035 8 H 0.114 0.886 9 S 2.715 3.285 10 O -1.052 7.052 11 O -1.027 7.027 12 N -1.008 6.008 13 C 0.107 3.893 14 C -0.131 4.131 15 C -0.110 4.110 16 C -0.127 4.127 17 C 0.160 3.840 18 H 0.085 0.915 19 C -0.158 4.158 20 C 0.076 3.924 21 N -0.864 5.864 22 H 0.297 0.703 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.352 0.648 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.927 -8.926 3.448 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.169 1.169 7 C -1.168 5.168 8 H 0.132 0.868 9 S 2.819 3.181 10 O -1.043 7.043 11 O -1.017 7.017 12 N -0.847 5.847 13 C -0.018 4.018 14 C -0.170 4.170 15 C -0.147 4.147 16 C -0.166 4.166 17 C 0.054 3.946 18 H 0.103 0.897 19 C -0.197 4.197 20 C -0.055 4.055 21 N -0.395 5.395 22 H 0.107 0.893 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.166 0.834 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.130 -9.442 3.373 14.253 hybrid contribution 1.055 1.901 -0.280 2.193 sum 11.186 -7.541 3.092 13.840 Atomic orbital electron populations 1.69998 1.08764 1.32145 1.41617 1.25968 0.95298 1.05174 0.87666 0.85191 0.79274 0.75122 0.79974 1.18111 1.18681 1.16940 1.30928 1.06758 1.12770 1.66375 0.86775 1.00098 0.72898 0.73780 0.71335 1.93250 1.74928 1.88479 1.47611 1.93365 1.75105 1.87975 1.45229 1.57765 1.59001 1.50622 1.17334 1.21571 1.02183 0.92293 0.85718 1.21925 1.00209 0.94406 1.00495 1.21485 0.99667 1.00153 0.93409 1.22006 1.01846 0.93086 0.99628 1.21024 0.95522 0.96043 0.81977 0.89706 1.22450 1.01589 1.00308 0.95337 1.21694 0.95196 0.98772 0.89797 1.58589 1.60165 1.12984 1.07766 0.89262 0.91383 0.89882 0.93502 0.88262 0.89726 0.90196 0.88284 0.93395 0.90397 0.92841 0.89357 0.94092 0.83395 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.29 13.19 21.45 0.28 -54.01 16 2 C 0.07 4.03 5.46 84.66 0.46 4.49 16 3 Si 0.99 41.70 29.54 68.60 2.03 43.73 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 7 C -1.04 -57.77 8.47 67.74 0.57 -57.20 16 8 H 0.11 5.79 7.81 -2.91 -0.02 5.77 16 9 S 2.72 150.28 4.42 -56.49 -0.25 150.03 16 10 O -1.05 -65.24 16.35 -128.00 -2.09 -67.34 16 11 O -1.03 -61.44 13.76 -128.00 -1.76 -63.20 16 12 N -1.01 -41.65 3.29 -490.79 -1.61 -43.26 16 13 C 0.11 3.68 6.51 86.36 0.56 4.24 16 14 C -0.13 -3.45 6.08 30.67 0.19 -3.26 16 15 C -0.11 -2.35 5.88 30.63 0.18 -2.17 16 16 C -0.13 -3.34 5.03 30.67 0.15 -3.18 16 17 C 0.16 5.40 2.96 44.97 0.13 5.53 16 18 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 19 C -0.16 -6.11 3.34 30.59 0.10 -6.01 16 20 C 0.08 2.16 6.53 86.31 0.56 2.73 16 21 N -0.86 -24.81 9.62 -186.73 -1.80 -26.60 16 22 H 0.30 16.26 8.31 -92.71 -0.77 15.49 16 23 H 0.07 2.67 6.68 -2.39 -0.02 2.65 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.97 6.98 -2.39 -0.02 1.96 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 3.60 6.28 -2.39 -0.01 3.58 16 32 H 0.05 2.44 5.68 -2.39 -0.01 2.42 16 33 H 0.09 2.12 6.89 -2.39 -0.02 2.10 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.35 7.50 9.08 -89.70 -0.81 6.69 16 36 H 0.34 10.30 8.99 -89.69 -0.81 9.50 16 Total: -1.00 -77.46 293.58 -2.81 -80.27 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.53 Total: 35.20 kcal Atomic # 6 Polarization: -57.74 SS G_CDS: 2.92 Total: -54.82 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -3.13 Total: -123.87 kcal Atomic # 8 Polarization: -126.68 SS G_CDS: -3.85 Total: -130.54 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 150.28 SS G_CDS: -0.25 Total: 150.03 kcal Total: -77.46 -2.81 -80.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.423 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds