Wall clock time and date at job start Mon Mar 30 2020 04:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00219 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.39842 * 293.53625 * 9 7 2 11 11 O 1.42100 * 106.40241 * 66.45331 * 9 7 2 12 12 N 1.65601 * 107.21908 * 179.97438 * 9 7 2 13 13 C 1.46493 * 119.99772 * 64.99956 * 12 9 7 14 14 H 1.09001 * 109.47856 * 334.99553 * 13 12 9 15 15 C 1.53001 * 109.47227 * 94.99898 * 13 12 9 16 16 C 1.53004 * 109.46993 * 59.99657 * 15 13 12 17 17 C 1.53005 * 109.46869 * 60.00382 * 16 15 13 18 18 C 1.53001 * 109.47001 * 299.99613 * 17 16 15 19 19 C 1.53004 * 109.46993 * 60.00463 * 18 17 16 20 20 H 1.08996 * 109.47290 * 59.99311 * 19 18 17 21 21 C 1.53001 * 109.46993 * 180.02562 * 19 18 17 22 22 N 1.46895 * 109.46875 * 294.99676 * 21 19 18 23 23 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99971 * 245.00012 * 12 9 7 25 25 H 1.09008 * 109.47394 * 179.97438 * 15 13 12 26 26 H 1.09000 * 109.47293 * 299.99557 * 15 13 12 27 27 H 1.09002 * 109.47280 * 179.97438 * 16 15 13 28 28 H 1.08991 * 109.47330 * 300.00208 * 16 15 13 29 29 H 1.08996 * 109.46915 * 60.00076 * 17 16 15 30 30 H 1.09000 * 109.47077 * 179.97438 * 17 16 15 31 31 H 1.08995 * 109.46881 * 180.02562 * 18 17 16 32 32 H 1.08996 * 109.47304 * 300.00693 * 18 17 16 33 33 H 1.08997 * 109.47258 * 55.00286 * 21 19 18 34 34 H 1.08996 * 109.46998 * 174.99703 * 21 19 18 35 35 H 1.00905 * 111.00080 * 179.97438 * 22 21 19 36 36 H 1.00894 * 111.00367 * 303.95365 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4511 -2.7950 1.2501 11 8 0.4519 -2.7956 -1.2494 12 7 2.2485 -3.9354 0.0005 13 6 3.1395 -4.1087 1.1504 14 1 3.2460 -3.1587 1.6741 15 6 2.5483 -5.1516 2.1010 16 6 2.3989 -6.4852 1.3660 17 6 3.7713 -6.9568 0.8812 18 6 4.3625 -5.9139 -0.0695 19 6 4.5119 -4.5804 0.6656 20 1 5.1748 -4.7094 1.5211 21 6 5.1025 -3.5373 -0.2853 22 7 6.4679 -3.9312 -0.6571 23 1 -0.4850 -0.8401 -0.0004 24 1 2.3174 -4.5325 -0.7608 25 1 3.2115 -5.2809 2.9564 26 1 1.5706 -4.8156 2.4465 27 1 1.9781 -7.2283 2.0433 28 1 1.7360 -6.3562 0.5105 29 1 4.4342 -7.0858 1.7367 30 1 3.6649 -7.9071 0.3579 31 1 5.3399 -6.2502 -0.4152 32 1 3.6995 -5.7849 -0.9250 33 1 4.4860 -3.4726 -1.1818 34 1 5.1264 -2.5666 0.2099 35 1 6.8800 -3.2579 -1.2857 36 1 7.0426 -4.0607 0.1619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084213270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:52 Heat of formation + Delta-G solvation = -120.918020 kcal Electronic energy + Delta-G solvation = -19371.892942 eV Core-core repulsion = 16401.898339 eV Total energy + Delta-G solvation = -2969.994603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.21935 -35.47202 -34.49610 -34.33815 -33.30102 -32.89590 -30.10405 -28.77601 -25.55034 -24.35530 -22.29951 -20.87631 -19.56176 -19.28881 -17.77173 -16.53880 -15.77103 -15.36714 -14.88540 -14.56861 -14.28863 -14.10981 -13.92731 -13.79227 -13.64122 -12.72807 -12.38216 -12.08272 -11.91289 -11.79455 -11.54850 -11.11327 -11.00284 -10.76898 -10.57525 -10.53170 -10.46608 -10.34013 -10.31650 -10.19687 -9.75631 -9.19607 -8.93681 -8.58156 -8.29973 -7.18123 -5.39031 2.19841 3.20237 3.21325 3.42008 4.13922 4.46854 4.60487 4.71510 4.86033 4.97189 5.05404 5.31435 5.47272 5.50568 5.52629 5.65592 5.69966 5.77630 5.83118 5.92731 6.03094 6.13139 6.27089 6.30748 6.32365 6.40633 6.44914 6.55112 6.67901 6.85846 7.16834 7.47158 7.58633 7.84876 8.03838 8.62486 10.19826 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.008366 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.179872 B = 3345.899474 C = 4107.388524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.090 3.910 3 Si 1.078 2.922 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.276 1.276 7 C -1.084 5.084 8 H 0.101 0.899 9 S 2.691 3.309 10 O -1.012 7.012 11 O -1.016 7.016 12 N -1.120 6.120 13 C 0.167 3.833 14 H 0.087 0.913 15 C -0.137 4.137 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.105 4.105 19 C -0.087 4.087 20 H 0.073 0.927 21 C 0.060 3.940 22 N -0.850 5.850 23 H 0.276 0.724 24 H 0.402 0.598 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.339 0.661 36 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.499 -8.867 2.140 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.128 4.128 3 Si 0.901 3.099 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.202 1.202 7 C -1.219 5.219 8 H 0.119 0.881 9 S 2.792 3.208 10 O -1.002 7.002 11 O -1.006 7.006 12 N -0.875 5.875 13 C 0.059 3.941 14 H 0.105 0.895 15 C -0.176 4.176 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.143 4.143 19 C -0.107 4.107 20 H 0.092 0.908 21 C -0.070 4.070 22 N -0.379 5.379 23 H 0.088 0.912 24 H 0.235 0.765 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.151 0.849 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.950 -7.954 1.981 12.892 hybrid contribution 1.125 -0.683 0.139 1.323 sum 11.075 -8.637 2.120 14.204 Atomic orbital electron populations 1.70844 1.07210 1.32010 1.37324 1.25915 0.95132 1.03857 0.87945 0.83474 0.75356 0.73579 0.77512 1.19605 1.20201 1.20197 1.31459 1.07799 1.12703 1.69905 0.88084 1.00958 0.72807 0.74187 0.72871 1.93413 1.73376 1.87796 1.45616 1.93425 1.73750 1.87977 1.45487 1.55759 1.55138 1.50183 1.26470 1.20548 0.88425 0.98817 0.86358 0.89547 1.22052 1.02500 0.95325 0.97747 1.21485 0.97062 0.96677 1.00330 1.21574 0.96808 0.98148 0.99157 1.21451 1.01194 0.93816 0.97794 1.21390 0.95807 0.95477 0.98012 0.90833 1.21891 0.89581 0.95859 0.99674 1.58762 1.04148 1.54108 1.20887 0.91151 0.76535 0.91733 0.90230 0.92531 0.91819 0.92386 0.92504 0.90994 0.92186 0.90174 0.94879 0.84892 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.78 13.66 55.43 0.76 -25.02 16 2 C 0.09 2.54 5.46 -17.82 -0.10 2.44 16 3 Si 1.08 23.75 29.90 -169.99 -5.08 18.66 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 7 C -1.08 -29.15 9.58 30.60 0.29 -28.85 16 8 H 0.10 2.47 7.81 -52.48 -0.41 2.06 16 9 S 2.69 68.75 4.29 -107.50 -0.46 68.29 16 10 O -1.01 -28.24 16.91 -57.17 -0.97 -29.20 16 11 O -1.02 -29.01 17.64 -57.17 -1.01 -30.02 16 12 N -1.12 -21.30 4.07 -4.89 -0.02 -21.32 16 13 C 0.17 2.75 2.43 -67.93 -0.16 2.58 16 14 H 0.09 1.54 7.85 -51.93 -0.41 1.13 16 15 C -0.14 -2.08 5.64 -26.73 -0.15 -2.23 16 16 C -0.12 -1.58 5.77 -26.73 -0.15 -1.73 16 17 C -0.12 -1.38 5.92 -26.73 -0.16 -1.53 16 18 C -0.10 -1.30 4.90 -26.73 -0.13 -1.43 16 19 C -0.09 -1.15 2.15 -90.61 -0.19 -1.34 16 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 21 C 0.06 0.84 5.94 -3.83 -0.02 0.81 16 22 N -0.85 -9.51 9.08 -10.37 -0.09 -9.60 16 23 H 0.28 8.68 6.52 -40.82 -0.27 8.42 16 24 H 0.40 6.89 6.81 -34.47 -0.23 6.66 16 25 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 26 H 0.08 1.41 7.64 -51.93 -0.40 1.02 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.92 7.44 -51.93 -0.39 0.54 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 32 H 0.06 0.80 6.50 -51.93 -0.34 0.46 16 33 H 0.08 1.25 7.76 -51.93 -0.40 0.84 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.34 3.42 9.08 -39.29 -0.36 3.06 16 36 H 0.33 3.18 8.99 -39.30 -0.35 2.83 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -33.56 297.68 -8.46 -42.02 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.29 Total: 13.00 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -0.78 Total: -31.29 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.64 Total: -55.94 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -1.98 Total: -59.22 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.08 Total: 18.66 kcal Atomic # 16 Polarization: 68.75 SS G_CDS: -0.46 Total: 68.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.56 -8.46 -42.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084213270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.897 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds