Wall clock time and date at job start Mon Mar 30 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00219 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.39842 * 293.53625 * 9 7 2 11 11 O 1.42100 * 106.40241 * 66.45331 * 9 7 2 12 12 N 1.65601 * 107.21908 * 179.97438 * 9 7 2 13 13 C 1.46493 * 119.99772 * 64.99956 * 12 9 7 14 14 H 1.09001 * 109.47856 * 334.99553 * 13 12 9 15 15 C 1.53001 * 109.47227 * 94.99898 * 13 12 9 16 16 C 1.53004 * 109.46993 * 59.99657 * 15 13 12 17 17 C 1.53005 * 109.46869 * 60.00382 * 16 15 13 18 18 C 1.53001 * 109.47001 * 299.99613 * 17 16 15 19 19 C 1.53004 * 109.46993 * 60.00463 * 18 17 16 20 20 H 1.08996 * 109.47290 * 59.99311 * 19 18 17 21 21 C 1.53001 * 109.46993 * 180.02562 * 19 18 17 22 22 N 1.46895 * 109.46875 * 294.99676 * 21 19 18 23 23 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99971 * 245.00012 * 12 9 7 25 25 H 1.09008 * 109.47394 * 179.97438 * 15 13 12 26 26 H 1.09000 * 109.47293 * 299.99557 * 15 13 12 27 27 H 1.09002 * 109.47280 * 179.97438 * 16 15 13 28 28 H 1.08991 * 109.47330 * 300.00208 * 16 15 13 29 29 H 1.08996 * 109.46915 * 60.00076 * 17 16 15 30 30 H 1.09000 * 109.47077 * 179.97438 * 17 16 15 31 31 H 1.08995 * 109.46881 * 180.02562 * 18 17 16 32 32 H 1.08996 * 109.47304 * 300.00693 * 18 17 16 33 33 H 1.08997 * 109.47258 * 55.00286 * 21 19 18 34 34 H 1.08996 * 109.46998 * 174.99703 * 21 19 18 35 35 H 1.00905 * 111.00080 * 179.97438 * 22 21 19 36 36 H 1.00894 * 111.00367 * 303.95365 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4511 -2.7950 1.2501 11 8 0.4519 -2.7956 -1.2494 12 7 2.2485 -3.9354 0.0005 13 6 3.1395 -4.1087 1.1504 14 1 3.2460 -3.1587 1.6741 15 6 2.5483 -5.1516 2.1010 16 6 2.3989 -6.4852 1.3660 17 6 3.7713 -6.9568 0.8812 18 6 4.3625 -5.9139 -0.0695 19 6 4.5119 -4.5804 0.6656 20 1 5.1748 -4.7094 1.5211 21 6 5.1025 -3.5373 -0.2853 22 7 6.4679 -3.9312 -0.6571 23 1 -0.4850 -0.8401 -0.0004 24 1 2.3174 -4.5325 -0.7608 25 1 3.2115 -5.2809 2.9564 26 1 1.5706 -4.8156 2.4465 27 1 1.9781 -7.2283 2.0433 28 1 1.7360 -6.3562 0.5105 29 1 4.4342 -7.0858 1.7367 30 1 3.6649 -7.9071 0.3579 31 1 5.3399 -6.2502 -0.4152 32 1 3.6995 -5.7849 -0.9250 33 1 4.4860 -3.4726 -1.1818 34 1 5.1264 -2.5666 0.2099 35 1 6.8800 -3.2579 -1.2857 36 1 7.0426 -4.0607 0.1619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084213270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:51 Heat of formation + Delta-G solvation = -148.764351 kcal Electronic energy + Delta-G solvation = -19373.100449 eV Core-core repulsion = 16401.898339 eV Total energy + Delta-G solvation = -2971.202110 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40850 -37.64324 -36.52060 -35.58498 -35.32112 -34.34419 -31.15430 -30.06405 -27.71986 -25.43695 -23.44884 -21.99425 -21.48276 -20.78660 -19.45690 -18.38139 -17.19267 -16.85177 -16.59821 -15.87251 -15.77173 -15.71548 -15.32435 -15.15353 -14.86977 -14.51058 -13.77806 -13.30849 -13.24795 -13.07940 -12.98463 -12.93384 -12.71788 -12.67854 -12.62282 -12.21727 -12.00326 -11.80508 -11.37911 -11.35567 -11.20292 -10.94256 -10.69295 -10.08622 -9.53547 -9.39681 -7.62165 0.19902 1.43825 1.48032 1.72946 2.32663 2.59504 2.70901 3.42888 3.51804 3.80602 3.86053 4.01880 4.21625 4.25094 4.38566 4.42108 4.50951 4.61500 4.64473 4.72444 4.81817 4.89116 5.05048 5.13021 5.23886 5.29910 5.35874 5.38762 5.47717 5.54345 5.65353 5.80185 6.24208 6.31315 6.49889 6.67822 7.94902 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.008366 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.179872 B = 3345.899474 C = 4107.388524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.034 3.966 3 Si 1.118 2.882 4 H -0.270 1.270 5 H -0.251 1.251 6 H -0.249 1.249 7 C -1.094 5.094 8 H 0.122 0.878 9 S 2.698 3.302 10 O -1.043 7.043 11 O -1.053 7.053 12 N -1.101 6.101 13 C 0.157 3.843 14 H 0.070 0.930 15 C -0.138 4.138 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.102 4.102 19 C -0.076 4.076 20 H 0.100 0.900 21 C 0.062 3.938 22 N -0.844 5.844 23 H 0.255 0.745 24 H 0.412 0.588 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.021 0.979 35 H 0.347 0.653 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.561 -9.604 2.596 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.932 3.068 4 H -0.195 1.195 5 H -0.175 1.175 6 H -0.172 1.172 7 C -1.228 5.228 8 H 0.140 0.860 9 S 2.799 3.201 10 O -1.032 7.032 11 O -1.043 7.043 12 N -0.862 5.862 13 C 0.049 3.951 14 H 0.088 0.912 15 C -0.177 4.177 16 C -0.157 4.157 17 C -0.149 4.149 18 C -0.140 4.140 19 C -0.097 4.097 20 H 0.118 0.882 21 C -0.070 4.070 22 N -0.375 5.375 23 H 0.066 0.934 24 H 0.248 0.752 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.160 0.840 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.026 -8.730 2.435 15.869 hybrid contribution 0.223 -0.550 0.015 0.594 sum 13.249 -9.280 2.450 16.360 Atomic orbital electron populations 1.70998 1.08608 1.30699 1.40626 1.27749 0.95060 1.08411 0.86350 0.83089 0.74877 0.69125 0.79749 1.19476 1.17539 1.17249 1.31823 1.09106 1.13286 1.68593 0.85957 1.00415 0.73253 0.74829 0.71583 1.93368 1.74760 1.88429 1.46641 1.93362 1.75388 1.88702 1.46845 1.55184 1.54472 1.48570 1.27960 1.20863 0.89866 0.98815 0.85529 0.91217 1.22047 1.01217 0.95807 0.98606 1.21510 0.98365 0.96005 0.99796 1.21537 0.95482 0.98215 0.99677 1.21446 1.01627 0.93467 0.97456 1.21337 0.93754 0.95673 0.98901 0.88211 1.21768 0.90916 0.95621 0.98659 1.58690 1.03091 1.54085 1.21599 0.93370 0.75206 0.88819 0.93661 0.91047 0.93690 0.90455 0.91048 0.89724 0.93557 0.92362 0.96082 0.84045 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -55.15 13.66 21.45 0.29 -54.85 16 2 C 0.03 1.95 5.46 84.65 0.46 2.41 16 3 Si 1.12 46.46 29.90 68.60 2.05 48.51 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 7 C -1.09 -59.27 9.58 67.73 0.65 -58.62 16 8 H 0.12 5.90 7.81 -2.91 -0.02 5.88 16 9 S 2.70 142.12 4.29 -56.49 -0.24 141.87 16 10 O -1.04 -60.50 16.91 -128.00 -2.16 -62.66 16 11 O -1.05 -62.37 17.64 -128.00 -2.26 -64.63 16 12 N -1.10 -42.28 4.07 -169.39 -0.69 -42.97 16 13 C 0.16 5.02 2.43 44.99 0.11 5.13 16 14 H 0.07 2.46 7.85 -2.39 -0.02 2.44 16 15 C -0.14 -4.02 5.64 30.60 0.17 -3.85 16 16 C -0.12 -2.97 5.77 30.60 0.18 -2.79 16 17 C -0.11 -2.18 5.92 30.60 0.18 -2.00 16 18 C -0.10 -2.24 4.90 30.60 0.15 -2.09 16 19 C -0.08 -1.83 2.15 -10.79 -0.02 -1.86 16 20 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 21 C 0.06 1.59 5.94 86.30 0.51 2.10 16 22 N -0.84 -16.42 9.08 -186.73 -1.70 -18.12 16 23 H 0.26 16.80 6.52 -92.71 -0.60 16.20 16 24 H 0.41 14.24 6.81 -96.75 -0.66 13.59 16 25 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.04 1.63 7.64 -2.39 -0.02 1.61 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.27 7.44 -2.39 -0.02 1.25 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.70 7.75 -2.39 -0.02 1.68 16 32 H 0.05 1.14 6.50 -2.39 -0.02 1.12 16 33 H 0.06 1.75 7.76 -2.39 -0.02 1.73 16 34 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.35 6.08 9.08 -89.69 -0.81 5.27 16 36 H 0.35 5.36 8.99 -89.70 -0.81 4.55 16 Total: -1.00 -74.67 297.68 -3.32 -78.00 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -1.01 Total: 36.42 kcal Atomic # 6 Polarization: -63.95 SS G_CDS: 2.39 Total: -61.56 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -2.09 Total: -115.94 kcal Atomic # 8 Polarization: -122.87 SS G_CDS: -4.42 Total: -127.30 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.05 Total: 48.51 kcal Atomic # 16 Polarization: 142.12 SS G_CDS: -0.24 Total: 141.87 kcal Total: -74.67 -3.32 -78.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084213270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.769 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds