Wall clock time and date at job start Mon Mar 30 2020 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.52228 * 2 1 4 4 N 1.46500 * 109.46863 * 60.00109 * 3 2 1 5 5 S 1.65606 * 120.00055 * 165.00064 * 4 3 2 6 6 O 1.42105 * 106.40008 * 311.45637 * 5 4 3 7 7 O 1.42098 * 106.40370 * 178.53822 * 5 4 3 8 8 C 1.76193 * 107.21910 * 64.99793 * 5 4 3 9 9 H 1.08002 * 120.00351 * 0.02562 * 8 5 4 10 10 C 1.37881 * 120.00314 * 180.02562 * 8 5 4 11 11 N 1.31506 * 120.00315 * 180.02562 * 10 8 5 12 12 Si 1.86797 * 119.99549 * 359.97438 * 10 8 5 13 13 H 1.48501 * 109.47295 * 90.00054 * 12 10 8 14 14 H 1.48505 * 109.47129 * 210.00207 * 12 10 8 15 15 H 1.48504 * 109.47322 * 330.00304 * 12 10 8 16 16 C 1.53119 * 109.52056 * 120.12787 * 2 1 3 17 17 C 1.53049 * 109.27268 * 62.37902 * 16 2 1 18 18 N 1.46848 * 109.57612 * 59.08527 * 17 16 2 19 19 C 1.46847 * 111.19635 * 298.28511 * 18 17 16 20 20 C 1.53038 * 109.52009 * 61.74406 * 19 18 17 21 21 H 1.09002 * 109.46709 * 59.99882 * 1 2 3 22 22 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47510 * 299.99836 * 1 2 3 24 24 H 1.09002 * 109.47598 * 300.00436 * 3 2 1 25 25 H 1.09002 * 109.47149 * 179.97438 * 3 2 1 26 26 H 0.97002 * 120.00335 * 345.00104 * 4 3 2 27 27 H 0.96999 * 119.99997 * 180.02562 * 11 10 8 28 28 H 1.09004 * 109.50238 * 182.25608 * 16 2 1 29 29 H 1.08994 * 109.50310 * 302.37425 * 16 2 1 30 30 H 1.08994 * 109.41071 * 299.06494 * 17 16 2 31 31 H 1.09007 * 109.44668 * 179.12439 * 17 16 2 32 32 H 1.00895 * 110.99631 * 174.18963 * 18 17 16 33 33 H 1.09003 * 109.46096 * 301.73142 * 19 18 17 34 34 H 1.08993 * 109.45360 * 181.75661 * 19 18 17 35 35 H 1.09003 * 109.49987 * 180.87703 * 20 19 18 36 36 H 1.09000 * 109.53782 * 60.78308 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5536 2.1330 1.1962 5 16 2.2349 3.5700 1.6580 6 8 3.6421 3.3729 1.6341 7 8 1.5293 3.9949 2.8159 8 6 1.8757 4.7467 0.3968 9 1 1.3033 4.4515 -0.4701 10 6 2.3254 6.0446 0.5165 11 7 2.0569 6.9231 -0.4246 12 14 3.3148 6.5556 2.0163 13 1 4.7604 6.3421 1.7519 14 1 3.0711 7.9919 2.3043 15 1 2.8995 5.7390 3.1851 16 6 2.0417 -0.7244 1.2482 17 6 1.5792 -2.1828 1.2111 18 7 2.0951 -2.8319 -0.0009 19 6 1.5780 -2.1823 -1.2122 20 6 2.0417 -0.7243 -1.2482 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6784 1.9563 -0.8899 25 1 3.1313 1.4410 0.0005 26 1 0.8316 1.7488 1.7178 27 1 2.3735 7.8360 -0.3405 28 1 3.1310 -0.6894 1.2684 29 1 1.6448 -0.2383 2.1394 30 1 0.4898 -2.2174 1.2060 31 1 1.9550 -2.7053 2.0909 32 1 1.8829 -3.8183 -0.0010 33 1 0.4885 -2.2168 -1.2059 34 1 1.9528 -2.7045 -2.0924 35 1 1.6449 -0.2382 -2.1395 36 1 3.1310 -0.6887 -1.2688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159997499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:16 Heat of formation + Delta-G solvation = -91.879216 kcal Electronic energy + Delta-G solvation = -18913.238654 eV Core-core repulsion = 15944.503268 eV Total energy + Delta-G solvation = -2968.735386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60715 -35.63923 -35.24105 -34.37654 -33.00646 -31.92323 -30.81042 -27.32665 -26.40763 -25.73159 -23.03024 -21.64564 -19.09643 -18.25613 -17.48356 -16.88319 -16.39949 -15.55008 -15.01564 -14.79749 -14.55324 -14.29378 -13.83972 -13.48468 -13.31685 -12.92609 -12.85480 -12.41045 -12.16031 -11.79497 -11.63552 -11.50608 -11.33603 -11.10844 -10.83113 -10.58619 -10.49816 -10.44428 -10.25113 -10.19564 -9.77301 -9.18450 -9.17180 -8.53552 -8.45692 -6.77857 -5.30996 2.14262 3.09420 3.20237 3.29486 3.97946 4.11436 4.38457 4.62033 4.71627 4.76094 4.85357 5.18766 5.24329 5.34731 5.36723 5.43826 5.50272 5.61477 5.72848 5.85091 5.90705 5.93589 6.01362 6.11062 6.19537 6.25660 6.29120 6.35561 6.53126 6.69676 6.92337 7.25285 7.50423 7.79524 8.23654 8.73692 10.34577 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.040990 B = 0.005786 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.925768 B = 4837.804148 C = 5070.531079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C 0.137 3.863 4 N -1.123 6.123 5 S 2.677 3.323 6 O -1.012 7.012 7 O -1.011 7.011 8 C -1.015 5.015 9 H 0.121 0.879 10 C 0.153 3.847 11 N -0.825 5.825 12 Si 0.802 3.198 13 H -0.246 1.246 14 H -0.256 1.256 15 H -0.220 1.220 16 C -0.108 4.108 17 C 0.056 3.944 18 N -0.690 5.690 19 C 0.058 3.942 20 C -0.108 4.108 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.403 0.597 27 H 0.280 0.720 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.338 0.662 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 -16.498 -1.004 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C 0.010 3.990 4 N -0.880 5.880 5 S 2.778 3.222 6 O -1.002 7.002 7 O -1.002 7.002 8 C -1.150 5.150 9 H 0.139 0.861 10 C -0.067 4.067 11 N -0.454 5.454 12 Si 0.622 3.378 13 H -0.170 1.170 14 H -0.180 1.180 15 H -0.142 1.142 16 C -0.146 4.146 17 C -0.073 4.073 18 N -0.321 5.321 19 C -0.071 4.071 20 C -0.146 4.146 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.236 0.764 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.443 -15.754 -0.398 15.825 hybrid contribution -1.175 0.193 0.042 1.191 sum -2.618 -15.561 -0.355 15.783 Atomic orbital electron populations 1.21974 0.94654 1.01173 1.02488 1.20783 0.95733 0.94697 0.95799 1.21154 0.99312 0.90897 0.87663 1.55482 1.52372 1.41628 1.38502 1.01269 0.73164 0.72764 0.74983 1.93402 1.32510 1.85741 1.88529 1.93469 1.74594 1.80942 1.51162 1.30484 1.49167 1.09422 1.25880 0.86146 1.24433 0.91620 0.95055 0.95550 1.69988 1.38945 1.04524 1.31951 0.87854 0.82986 0.82471 0.84460 1.17014 1.17981 1.14225 1.21651 1.02064 0.93440 0.97452 1.21984 0.97002 0.95781 0.92502 1.60263 1.63402 1.06416 1.02055 1.21938 0.97037 0.95517 0.92592 1.21614 1.01982 0.93918 0.97086 0.92194 0.92821 0.92291 0.91841 0.90515 0.76432 0.90963 0.90694 0.91208 0.95021 0.91072 0.84465 0.94989 0.91027 0.91129 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 7.73 37.16 0.29 -1.41 16 2 C -0.07 -0.88 0.54 -154.39 -0.08 -0.96 16 3 C 0.14 2.26 5.12 -4.04 -0.02 2.24 16 4 N -1.12 -21.15 5.36 -10.61 -0.06 -21.20 16 5 S 2.68 66.73 4.24 -107.50 -0.46 66.28 16 6 O -1.01 -27.07 16.30 -57.17 -0.93 -28.01 16 7 O -1.01 -27.24 16.02 -57.17 -0.92 -28.15 16 8 C -1.02 -28.40 10.26 30.60 0.31 -28.09 16 9 H 0.12 3.39 8.06 -52.49 -0.42 2.96 16 10 C 0.15 4.42 5.47 -17.82 -0.10 4.33 16 11 N -0.82 -24.00 13.96 55.43 0.77 -23.22 16 12 Si 0.80 20.83 26.54 -169.99 -4.51 16.32 16 13 H -0.25 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.22 -5.82 5.61 56.52 0.32 -5.51 16 16 C -0.11 -1.36 4.68 -26.64 -0.12 -1.49 16 17 C 0.06 0.58 6.30 -3.83 -0.02 0.56 16 18 N -0.69 -6.81 6.85 -113.81 -0.78 -7.59 16 19 C 0.06 0.56 6.30 -3.83 -0.02 0.54 16 20 C -0.11 -1.22 4.88 -26.65 -0.13 -1.35 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.55 4.93 -51.93 -0.26 0.29 16 23 H 0.06 0.70 6.61 -51.93 -0.34 0.36 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.34 7.75 -51.93 -0.40 0.94 16 26 H 0.40 6.57 6.50 -34.47 -0.22 6.35 16 27 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.89 7.29 -51.93 -0.38 0.51 16 30 H 0.03 0.31 6.52 -51.93 -0.34 -0.03 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.34 2.64 8.90 -39.29 -0.35 2.29 16 33 H 0.03 0.30 6.51 -51.93 -0.34 -0.04 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 288.72 15.07 4.35 4.35 Total: -1.00 -32.81 288.72 -7.66 -40.47 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.23 Total: 6.40 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 0.10 Total: -25.64 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.06 Total: -52.02 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -1.85 Total: -56.16 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.51 Total: 16.32 kcal Atomic # 16 Polarization: 66.73 SS G_CDS: -0.46 Total: 66.28 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.81 -7.66 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159997499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.409 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds