Wall clock time and date at job start Mon Mar 30 2020 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.52228 * 2 1 4 4 N 1.46500 * 109.46863 * 60.00109 * 3 2 1 5 5 S 1.65606 * 120.00055 * 165.00064 * 4 3 2 6 6 O 1.42105 * 106.40008 * 311.45637 * 5 4 3 7 7 O 1.42098 * 106.40370 * 178.53822 * 5 4 3 8 8 C 1.76193 * 107.21910 * 64.99793 * 5 4 3 9 9 H 1.08002 * 120.00351 * 0.02562 * 8 5 4 10 10 C 1.37881 * 120.00314 * 180.02562 * 8 5 4 11 11 N 1.31506 * 120.00315 * 180.02562 * 10 8 5 12 12 Si 1.86797 * 119.99549 * 359.97438 * 10 8 5 13 13 H 1.48501 * 109.47295 * 90.00054 * 12 10 8 14 14 H 1.48505 * 109.47129 * 210.00207 * 12 10 8 15 15 H 1.48504 * 109.47322 * 330.00304 * 12 10 8 16 16 C 1.53119 * 109.52056 * 120.12787 * 2 1 3 17 17 C 1.53049 * 109.27268 * 62.37902 * 16 2 1 18 18 N 1.46848 * 109.57612 * 59.08527 * 17 16 2 19 19 C 1.46847 * 111.19635 * 298.28511 * 18 17 16 20 20 C 1.53038 * 109.52009 * 61.74406 * 19 18 17 21 21 H 1.09002 * 109.46709 * 59.99882 * 1 2 3 22 22 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47510 * 299.99836 * 1 2 3 24 24 H 1.09002 * 109.47598 * 300.00436 * 3 2 1 25 25 H 1.09002 * 109.47149 * 179.97438 * 3 2 1 26 26 H 0.97002 * 120.00335 * 345.00104 * 4 3 2 27 27 H 0.96999 * 119.99997 * 180.02562 * 11 10 8 28 28 H 1.09004 * 109.50238 * 182.25608 * 16 2 1 29 29 H 1.08994 * 109.50310 * 302.37425 * 16 2 1 30 30 H 1.08994 * 109.41071 * 299.06494 * 17 16 2 31 31 H 1.09007 * 109.44668 * 179.12439 * 17 16 2 32 32 H 1.00895 * 110.99631 * 174.18963 * 18 17 16 33 33 H 1.09003 * 109.46096 * 301.73142 * 19 18 17 34 34 H 1.08993 * 109.45360 * 181.75661 * 19 18 17 35 35 H 1.09003 * 109.49987 * 180.87703 * 20 19 18 36 36 H 1.09000 * 109.53782 * 60.78308 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5536 2.1330 1.1962 5 16 2.2349 3.5700 1.6580 6 8 3.6421 3.3729 1.6341 7 8 1.5293 3.9949 2.8159 8 6 1.8757 4.7467 0.3968 9 1 1.3033 4.4515 -0.4701 10 6 2.3254 6.0446 0.5165 11 7 2.0569 6.9231 -0.4246 12 14 3.3148 6.5556 2.0163 13 1 4.7604 6.3421 1.7519 14 1 3.0711 7.9919 2.3043 15 1 2.8995 5.7390 3.1851 16 6 2.0417 -0.7244 1.2482 17 6 1.5792 -2.1828 1.2111 18 7 2.0951 -2.8319 -0.0009 19 6 1.5780 -2.1823 -1.2122 20 6 2.0417 -0.7243 -1.2482 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6784 1.9563 -0.8899 25 1 3.1313 1.4410 0.0005 26 1 0.8316 1.7488 1.7178 27 1 2.3735 7.8360 -0.3405 28 1 3.1310 -0.6894 1.2684 29 1 1.6448 -0.2383 2.1394 30 1 0.4898 -2.2174 1.2060 31 1 1.9550 -2.7053 2.0909 32 1 1.8829 -3.8183 -0.0010 33 1 0.4885 -2.2168 -1.2059 34 1 1.9528 -2.7045 -2.0924 35 1 1.6449 -0.2382 -2.1395 36 1 3.1310 -0.6887 -1.2688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159997499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:16 Heat of formation + Delta-G solvation = -119.438041 kcal Electronic energy + Delta-G solvation = -18914.433694 eV Core-core repulsion = 15944.503268 eV Total energy + Delta-G solvation = -2969.930426 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58185 -37.67766 -36.49616 -36.46402 -35.18751 -33.14209 -31.68382 -28.57072 -28.25737 -27.00769 -23.90351 -22.64937 -21.08789 -19.46740 -19.24886 -18.63570 -17.72974 -17.04551 -16.80039 -15.87077 -15.71667 -15.58492 -15.31948 -15.24022 -14.95094 -14.55994 -13.98353 -13.67441 -13.48137 -13.35114 -12.99665 -12.87854 -12.69146 -12.67206 -12.56029 -12.48390 -12.01527 -11.87271 -11.54100 -11.34188 -11.24214 -11.19852 -11.10278 -10.18555 -9.23650 -8.96603 -7.51980 0.17292 1.04694 1.14195 1.21498 1.89087 2.41963 2.60293 3.31657 3.38631 3.68365 3.76680 3.89157 4.22912 4.31951 4.35878 4.47749 4.49915 4.55651 4.72018 4.77604 4.80922 4.85657 4.96229 5.01855 5.12498 5.15392 5.21189 5.31511 5.38257 5.44080 5.57217 6.01434 6.15418 6.31819 6.54136 6.61910 8.21041 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.040990 B = 0.005786 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.925768 B = 4837.804148 C = 5070.531079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C 0.128 3.872 4 N -1.106 6.106 5 S 2.699 3.301 6 O -1.031 7.031 7 O -1.031 7.031 8 C -1.037 5.037 9 H 0.107 0.893 10 C 0.108 3.892 11 N -0.854 5.854 12 Si 0.825 3.175 13 H -0.240 1.240 14 H -0.220 1.220 15 H -0.229 1.229 16 C -0.112 4.112 17 C 0.061 3.939 18 N -0.700 5.700 19 C 0.062 3.938 20 C -0.109 4.109 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.417 0.583 27 H 0.291 0.709 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.353 0.647 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 -18.024 -0.799 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 C 0.001 3.999 4 N -0.867 5.867 5 S 2.799 3.201 6 O -1.021 7.021 7 O -1.021 7.021 8 C -1.169 5.169 9 H 0.125 0.875 10 C -0.109 4.109 11 N -0.484 5.484 12 Si 0.642 3.358 13 H -0.163 1.163 14 H -0.142 1.142 15 H -0.152 1.152 16 C -0.151 4.151 17 C -0.068 4.068 18 N -0.333 5.333 19 C -0.067 4.067 20 C -0.147 4.147 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.253 0.747 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.172 0.828 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.918 -17.263 -0.203 17.371 hybrid contribution -1.047 0.596 -0.086 1.208 sum -2.965 -16.667 -0.289 16.931 Atomic orbital electron populations 1.21977 0.93392 1.02494 1.02309 1.20752 0.96657 0.92025 0.96960 1.21406 0.98750 0.93343 0.86352 1.54978 1.52615 1.39676 1.39473 1.00433 0.72704 0.73193 0.73817 1.93374 1.33841 1.86290 1.88548 1.93431 1.74886 1.82117 1.51681 1.30985 1.48795 1.10554 1.26590 0.87491 1.25161 0.92562 0.95491 0.97654 1.70008 1.39898 1.05372 1.33149 0.87497 0.82315 0.84325 0.81696 1.16294 1.14176 1.15202 1.21673 1.00966 0.95365 0.97047 1.21913 0.97580 0.94067 0.93206 1.60211 1.63746 1.07414 1.01883 1.21920 0.97589 0.94109 0.93092 1.21636 1.01300 0.95340 0.96453 0.92181 0.90748 0.92698 0.92000 0.91809 0.74668 0.89865 0.92478 0.91635 0.93917 0.90171 0.82822 0.93992 0.89591 0.90397 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 7.73 71.98 0.56 -2.51 16 2 C -0.06 -1.51 0.54 -52.10 -0.03 -1.54 16 3 C 0.13 4.20 5.12 86.38 0.44 4.64 16 4 N -1.11 -41.24 5.36 -187.49 -1.01 -42.24 16 5 S 2.70 134.50 4.24 -56.49 -0.24 134.26 16 6 O -1.03 -55.16 16.30 -128.00 -2.09 -57.25 16 7 O -1.03 -55.13 16.02 -128.00 -2.05 -57.18 16 8 C -1.04 -58.67 10.26 67.74 0.69 -57.98 16 9 H 0.11 6.16 8.06 -2.91 -0.02 6.13 16 10 C 0.11 6.27 5.47 84.66 0.46 6.73 16 11 N -0.85 -49.83 13.96 21.45 0.30 -49.53 16 12 Si 0.82 41.61 26.54 68.60 1.82 43.43 16 13 H -0.24 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.22 -9.75 7.11 99.48 0.71 -9.05 16 15 H -0.23 -11.90 5.61 99.48 0.56 -11.35 16 16 C -0.11 -2.69 4.68 30.65 0.14 -2.54 16 17 C 0.06 1.11 6.30 86.33 0.54 1.66 16 18 N -0.70 -11.92 6.85 -513.98 -3.52 -15.44 16 19 C 0.06 1.02 6.30 86.33 0.54 1.56 16 20 C -0.11 -2.28 4.88 30.65 0.15 -2.13 16 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.07 1.28 4.93 -2.39 -0.01 1.27 16 23 H 0.05 1.20 6.61 -2.39 -0.02 1.18 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 26 H 0.42 13.22 6.50 -96.74 -0.63 12.60 16 27 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 1.59 7.29 -2.39 -0.02 1.57 16 30 H 0.04 0.69 6.52 -2.39 -0.02 0.68 16 31 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.35 4.41 8.90 -89.70 -0.80 3.61 16 33 H 0.04 0.62 6.51 -2.39 -0.02 0.61 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -69.11 288.72 -3.75 -72.86 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.48 Total: 23.21 kcal Atomic # 6 Polarization: -55.63 SS G_CDS: 3.51 Total: -52.12 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.23 Total: -107.21 kcal Atomic # 8 Polarization: -110.29 SS G_CDS: -4.14 Total: -114.43 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.82 Total: 43.43 kcal Atomic # 16 Polarization: 134.50 SS G_CDS: -0.24 Total: 134.26 kcal Total: -69.11 -3.75 -72.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159997499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.579 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds