Wall clock time and date at job start Mon Mar 30 2020 04:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99631 * 2 1 4 4 H 1.48497 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47028 * 299.99698 * 3 2 1 6 6 H 1.48496 * 109.47064 * 59.99605 * 3 2 1 7 7 C 1.37877 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46880 * 179.97438 * 10 9 7 12 12 O 1.42110 * 110.53974 * 68.37482 * 11 10 9 13 13 O 1.42095 * 110.54334 * 291.62439 * 11 10 9 14 14 N 1.65603 * 104.44840 * 179.97438 * 11 10 9 15 15 C 1.46493 * 119.99798 * 65.00465 * 14 11 10 16 16 C 1.53001 * 109.47158 * 165.00059 * 15 14 11 17 17 H 1.08996 * 109.47352 * 64.99489 * 16 15 14 18 18 N 1.46905 * 109.46947 * 304.99719 * 16 15 14 19 19 C 1.53001 * 109.47190 * 184.99901 * 16 15 14 20 20 C 1.53005 * 117.49698 * 248.74299 * 19 16 15 21 21 C 1.53001 * 117.49867 * 180.08387 * 19 16 15 22 22 H 0.96992 * 120.00473 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47291 * 59.99482 * 9 7 2 24 24 H 1.09007 * 109.46551 * 299.99415 * 9 7 2 25 25 H 1.08995 * 109.47647 * 59.99688 * 10 9 7 26 26 H 1.08998 * 109.47254 * 299.99002 * 10 9 7 27 27 H 0.97004 * 119.99732 * 245.00013 * 14 11 10 28 28 H 1.09001 * 109.47725 * 44.99673 * 15 14 11 29 29 H 1.09000 * 109.47116 * 284.99583 * 15 14 11 30 30 H 1.00901 * 110.99869 * 176.04901 * 18 16 15 31 31 H 1.00896 * 110.99543 * 300.00023 * 18 16 15 32 32 H 1.08999 * 115.55273 * 34.41507 * 19 16 15 33 33 H 1.08995 * 117.49745 * 0.02562 * 20 19 16 34 34 H 1.08996 * 117.49514 * 145.02210 * 20 19 16 35 35 H 1.08997 * 117.50296 * 214.97733 * 21 19 16 36 36 H 1.08999 * 117.49872 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 16 1.3386 -5.2330 0.0026 12 8 0.6651 -5.4205 -1.2347 13 8 0.6641 -5.4188 1.2394 14 7 2.5208 -6.3926 0.0032 15 6 3.4190 -6.5222 1.1532 16 6 4.1502 -7.8642 1.0806 17 1 4.7990 -7.8776 0.2049 18 7 3.1681 -8.9520 0.9790 19 6 4.9933 -8.0546 2.3431 20 6 6.5150 -8.0146 2.1890 21 6 5.8076 -9.3446 2.4609 22 1 -0.4850 0.8399 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6243 -2.5566 0.8904 25 1 2.8715 -3.6038 0.8922 26 1 2.8727 -3.6047 -0.8878 27 1 2.6185 -6.9861 -0.7578 28 1 2.8389 -6.4739 2.0748 29 1 4.1467 -5.7108 1.1391 30 1 3.6265 -9.8436 0.8650 31 1 2.5543 -8.9608 1.7797 32 1 4.5691 -7.6419 3.2584 33 1 6.9154 -7.8522 1.1883 34 1 7.0919 -7.5759 3.0031 35 1 5.9195 -9.7803 3.4537 36 1 5.7423 -10.0577 1.6392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194734948.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:33 Heat of formation + Delta-G solvation = -64.987278 kcal Electronic energy + Delta-G solvation = -17831.068959 eV Core-core repulsion = 14863.499695 eV Total energy + Delta-G solvation = -2967.569264 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.77019 -36.48395 -35.45463 -35.24517 -33.85538 -32.52394 -31.12037 -27.69168 -25.56178 -23.09487 -22.67489 -21.64373 -20.66801 -18.71436 -17.38175 -16.89492 -16.26076 -16.07118 -15.54983 -15.25636 -14.86054 -14.56147 -14.39722 -13.93497 -13.36416 -12.87510 -12.55716 -12.45281 -11.96095 -11.70540 -11.63684 -11.48491 -11.42486 -11.36521 -11.07577 -10.92059 -10.68841 -10.50771 -10.36307 -10.35118 -9.74909 -9.39036 -8.92328 -8.91513 -8.48593 -6.10412 -4.15778 0.89921 3.23065 3.26410 3.33580 3.36994 3.42083 4.19997 4.34079 4.35239 4.44270 4.51447 4.69911 4.80379 4.83064 5.13081 5.14230 5.24787 5.26760 5.50203 5.52948 5.65404 5.72426 5.73628 5.77058 5.88182 6.09636 6.53757 6.89972 7.23499 7.31841 7.34053 7.41023 7.82880 8.20401 8.87971 9.48869 11.00694 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.004478 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.611881 B = 6251.815060 C = 7050.076292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.593 4.593 11 S 2.597 3.403 12 O -0.969 6.969 13 O -0.970 6.970 14 N -1.115 6.115 15 C 0.126 3.874 16 C 0.116 3.884 17 H 0.087 0.913 18 N -0.834 5.834 19 C -0.193 4.193 20 C -0.172 4.172 21 C -0.179 4.179 22 H 0.264 0.736 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.416 0.584 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.339 0.661 31 H 0.345 0.655 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -17.164 3.840 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.726 4.726 11 S 2.694 3.306 12 O -0.959 6.959 13 O -0.960 6.960 14 N -0.873 5.873 15 C -0.001 4.001 16 C 0.003 3.997 17 H 0.105 0.895 18 N -0.363 5.363 19 C -0.214 4.214 20 C -0.210 4.210 21 C -0.216 4.216 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.250 0.750 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.778 -16.765 3.331 20.207 hybrid contribution 1.649 0.652 0.670 1.895 sum 12.427 -16.113 4.001 20.739 Atomic orbital electron populations 1.69965 1.06104 1.27049 1.49747 1.25075 0.94963 0.99531 0.94962 0.86421 0.79917 0.83237 0.77746 1.19674 1.20811 1.20818 1.21055 0.93082 0.89825 1.51898 0.92028 1.18964 0.92736 0.90626 0.98883 1.30473 1.13736 1.18475 1.09896 1.05384 0.74695 0.76456 0.74063 1.93548 1.71754 1.85342 1.45283 1.93525 1.71548 1.85017 1.45871 1.55510 1.52788 1.51657 1.27371 1.21223 0.92940 0.96551 0.89427 1.21222 0.91845 0.91614 0.95002 0.89515 1.58886 1.22029 1.06560 1.48799 1.23303 0.94064 1.02620 1.01388 1.22984 0.94200 1.00538 1.03227 1.22911 1.04777 0.91008 1.02946 0.92607 0.94823 0.94847 0.86501 0.86188 0.74956 0.90510 0.91307 0.84809 0.84175 0.87339 0.88519 0.88693 0.88780 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -11.41 6.01 37.16 0.22 -11.18 16 11 S 2.60 47.09 5.46 -107.50 -0.59 46.50 16 12 O -0.97 -20.70 18.08 -57.54 -1.04 -21.74 16 13 O -0.97 -20.38 17.50 -57.54 -1.01 -21.38 16 14 N -1.12 -14.74 5.63 -10.62 -0.06 -14.80 16 15 C 0.13 1.39 5.78 -4.05 -0.02 1.37 16 16 C 0.12 1.00 3.09 -67.71 -0.21 0.79 16 17 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 18 N -0.83 -7.16 8.87 -4.66 -0.04 -7.20 16 19 C -0.19 -1.44 5.33 -90.62 -0.48 -1.92 16 20 C -0.17 -1.17 10.18 -26.69 -0.27 -1.44 16 21 C -0.18 -1.13 9.87 -26.69 -0.26 -1.39 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.03 0.91 8.14 -51.92 -0.42 0.48 16 25 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 26 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 27 H 0.42 5.03 8.54 -34.47 -0.29 4.73 16 28 H 0.08 0.90 7.70 -51.93 -0.40 0.50 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.34 2.28 8.30 -39.29 -0.33 1.96 16 31 H 0.35 3.01 9.00 -39.29 -0.35 2.66 16 32 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.53 7.74 -51.93 -0.40 0.13 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -34.92 317.87 -9.33 -44.25 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.53 Total: 5.72 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -1.58 Total: -26.46 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.64 Total: -47.94 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -2.05 Total: -43.12 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 47.09 SS G_CDS: -0.59 Total: 46.50 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.92 -9.33 -44.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734948.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.740 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds