Wall clock time and date at job start Mon Mar 30 2020 04:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99631 * 2 1 4 4 H 1.48497 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47028 * 299.99698 * 3 2 1 6 6 H 1.48496 * 109.47064 * 59.99605 * 3 2 1 7 7 C 1.37877 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46880 * 179.97438 * 10 9 7 12 12 O 1.42110 * 110.53974 * 68.37482 * 11 10 9 13 13 O 1.42095 * 110.54334 * 291.62439 * 11 10 9 14 14 N 1.65603 * 104.44840 * 179.97438 * 11 10 9 15 15 C 1.46493 * 119.99798 * 65.00465 * 14 11 10 16 16 C 1.53001 * 109.47158 * 165.00059 * 15 14 11 17 17 H 1.08996 * 109.47352 * 64.99489 * 16 15 14 18 18 N 1.46905 * 109.46947 * 304.99719 * 16 15 14 19 19 C 1.53001 * 109.47190 * 184.99901 * 16 15 14 20 20 C 1.53005 * 117.49698 * 248.74299 * 19 16 15 21 21 C 1.53001 * 117.49867 * 180.08387 * 19 16 15 22 22 H 0.96992 * 120.00473 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47291 * 59.99482 * 9 7 2 24 24 H 1.09007 * 109.46551 * 299.99415 * 9 7 2 25 25 H 1.08995 * 109.47647 * 59.99688 * 10 9 7 26 26 H 1.08998 * 109.47254 * 299.99002 * 10 9 7 27 27 H 0.97004 * 119.99732 * 245.00013 * 14 11 10 28 28 H 1.09001 * 109.47725 * 44.99673 * 15 14 11 29 29 H 1.09000 * 109.47116 * 284.99583 * 15 14 11 30 30 H 1.00901 * 110.99869 * 176.04901 * 18 16 15 31 31 H 1.00896 * 110.99543 * 300.00023 * 18 16 15 32 32 H 1.08999 * 115.55273 * 34.41507 * 19 16 15 33 33 H 1.08995 * 117.49745 * 0.02562 * 20 19 16 34 34 H 1.08996 * 117.49514 * 145.02210 * 20 19 16 35 35 H 1.08997 * 117.50296 * 214.97733 * 21 19 16 36 36 H 1.08999 * 117.49872 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 16 1.3386 -5.2330 0.0026 12 8 0.6651 -5.4205 -1.2347 13 8 0.6641 -5.4188 1.2394 14 7 2.5208 -6.3926 0.0032 15 6 3.4190 -6.5222 1.1532 16 6 4.1502 -7.8642 1.0806 17 1 4.7990 -7.8776 0.2049 18 7 3.1681 -8.9520 0.9790 19 6 4.9933 -8.0546 2.3431 20 6 6.5150 -8.0146 2.1890 21 6 5.8076 -9.3446 2.4609 22 1 -0.4850 0.8399 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6243 -2.5566 0.8904 25 1 2.8715 -3.6038 0.8922 26 1 2.8727 -3.6047 -0.8878 27 1 2.6185 -6.9861 -0.7578 28 1 2.8389 -6.4739 2.0748 29 1 4.1467 -5.7108 1.1391 30 1 3.6265 -9.8436 0.8650 31 1 2.5543 -8.9608 1.7797 32 1 4.5691 -7.6419 3.2584 33 1 6.9154 -7.8522 1.1883 34 1 7.0919 -7.5759 3.0031 35 1 5.9195 -9.7803 3.4537 36 1 5.7423 -10.0577 1.6392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194734948.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:32 Heat of formation + Delta-G solvation = -93.478974 kcal Electronic energy + Delta-G solvation = -17832.304451 eV Core-core repulsion = 14863.499695 eV Total energy + Delta-G solvation = -2968.804756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40645 -38.08118 -36.95386 -36.22842 -35.87422 -33.33903 -33.09419 -28.51900 -27.56965 -23.86701 -23.57225 -23.15545 -21.36533 -20.10391 -19.02089 -18.25306 -17.57619 -17.17835 -16.83971 -16.50357 -16.20516 -15.99556 -15.20075 -15.04921 -14.77921 -14.45655 -13.81173 -13.65813 -13.39057 -13.13439 -13.05175 -12.93697 -12.75545 -12.65301 -12.42185 -12.24263 -12.16873 -12.07328 -11.71616 -11.23142 -11.14347 -11.10809 -10.64527 -10.22717 -9.55529 -8.24940 -6.38983 -0.60379 1.41713 1.42461 1.55768 1.94899 2.39025 2.86541 2.89238 3.08523 3.33847 3.59556 3.72926 3.94604 4.04440 4.14752 4.16726 4.20431 4.36919 4.49579 4.70032 4.78551 4.80833 4.92064 5.06189 5.11943 5.27187 5.28831 5.29740 5.30600 5.69908 6.07664 6.21330 6.33481 6.64916 6.75191 7.31258 8.87624 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.004478 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.611881 B = 6251.815060 C = 7050.076292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.018 3.982 10 C -0.590 4.590 11 S 2.624 3.376 12 O -1.004 7.004 13 O -1.000 7.000 14 N -1.095 6.095 15 C 0.113 3.887 16 C 0.124 3.876 17 H 0.096 0.904 18 N -0.844 5.844 19 C -0.199 4.199 20 C -0.173 4.173 21 C -0.171 4.171 22 H 0.267 0.733 23 H 0.005 0.995 24 H 0.007 0.993 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.425 0.575 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.350 0.650 31 H 0.343 0.657 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.763 -17.632 3.970 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.722 4.722 11 S 2.720 3.280 12 O -0.994 6.994 13 O -0.990 6.990 14 N -0.857 5.857 15 C -0.014 4.014 16 C 0.011 3.989 17 H 0.114 0.886 18 N -0.374 5.374 19 C -0.220 4.220 20 C -0.211 4.211 21 C -0.208 4.208 22 H 0.076 0.924 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.160 0.840 26 H 0.160 0.840 27 H 0.262 0.738 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.383 -17.248 3.455 22.103 hybrid contribution 0.863 0.703 0.652 1.290 sum 14.247 -16.545 4.107 22.216 Atomic orbital electron populations 1.70112 1.08107 1.28242 1.51025 1.26136 0.95854 1.03930 0.94417 0.85249 0.79177 0.77958 0.77756 1.17851 1.20448 1.20370 1.21564 0.94014 0.90788 1.51301 0.90538 1.18836 0.93686 0.93218 0.96326 1.30357 1.12798 1.16714 1.12290 1.04292 0.74739 0.76390 0.72558 1.93494 1.73337 1.85862 1.46689 1.93484 1.72900 1.85481 1.47131 1.54995 1.52199 1.49960 1.28543 1.21578 0.92891 0.99005 0.87923 1.21124 0.91635 0.90154 0.95982 0.88635 1.58894 1.22347 1.07312 1.48816 1.23175 0.94345 1.03975 1.00550 1.23062 0.93541 1.00825 1.03648 1.22974 1.03503 0.90773 1.03551 0.92422 0.97637 0.97508 0.83991 0.83961 0.73790 0.91312 0.89378 0.83554 0.84385 0.87869 0.88047 0.88448 0.88334 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.29 21.45 0.28 -57.01 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 4 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.02 0.96 4.98 29.85 0.15 1.11 16 10 C -0.59 -22.20 6.01 71.98 0.43 -21.77 16 11 S 2.62 94.53 5.46 -56.49 -0.31 94.22 16 12 O -1.00 -43.19 18.08 -127.65 -2.31 -45.50 16 13 O -1.00 -42.37 17.50 -127.65 -2.23 -44.60 16 14 N -1.09 -27.14 5.63 -187.50 -1.06 -28.20 16 15 C 0.11 2.25 5.78 86.38 0.50 2.75 16 16 C 0.12 1.85 3.09 44.91 0.14 1.99 16 17 H 0.10 1.29 7.90 -2.39 -0.02 1.27 16 18 N -0.84 -12.90 8.87 -168.67 -1.50 -14.40 16 19 C -0.20 -2.54 5.33 -10.79 -0.06 -2.60 16 20 C -0.17 -1.93 10.18 30.62 0.31 -1.61 16 21 C -0.17 -1.73 9.87 30.62 0.30 -1.43 16 22 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 23 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 24 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 25 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 26 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 27 H 0.43 9.44 8.54 -96.74 -0.83 8.61 16 28 H 0.07 1.52 7.70 -2.39 -0.02 1.50 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.35 3.96 8.30 -89.69 -0.74 3.21 16 31 H 0.34 5.53 9.00 -89.70 -0.81 4.72 16 32 H 0.10 1.44 8.11 -2.39 -0.02 1.42 16 33 H 0.10 1.04 8.05 -2.39 -0.02 1.02 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 0.87 7.74 -2.39 -0.02 0.85 16 Total: -1.00 -75.75 317.87 -3.90 -79.65 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -1.28 Total: 21.54 kcal Atomic # 6 Polarization: -53.54 SS G_CDS: 2.47 Total: -51.07 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -2.27 Total: -99.61 kcal Atomic # 8 Polarization: -85.56 SS G_CDS: -4.54 Total: -90.10 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 94.53 SS G_CDS: -0.31 Total: 94.22 kcal Total: -75.75 -3.90 -79.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734948.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.834 kcal (2) G-P(sol) polarization free energy of solvation -75.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds