Wall clock time and date at job start Mon Mar 30 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47225 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99590 * 3 2 1 6 6 H 1.48497 * 109.47276 * 60.00059 * 3 2 1 7 7 C 1.37878 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00257 * 180.27803 * 7 2 1 9 9 C 1.50699 * 119.99536 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46868 * 180.02562 * 9 7 2 11 11 C 1.36585 * 119.99815 * 171.95770 * 10 9 7 12 12 C 1.35023 * 120.00279 * 52.09288 * 11 10 9 13 13 C 1.41191 * 119.99633 * 12.25915 * 12 11 10 14 14 O 1.21711 * 120.00401 * 6.93139 * 13 12 11 15 15 O 1.34974 * 119.99836 * 186.94104 * 13 12 11 16 16 C 1.46494 * 120.00059 * 351.95326 * 10 9 7 17 17 C 1.50705 * 109.46952 * 89.99984 * 16 10 9 18 18 C 1.38674 * 120.41804 * 269.72373 * 17 16 10 19 19 C 1.38637 * 118.41814 * 179.78132 * 18 17 16 20 20 C 1.38230 * 119.15940 * 0.51188 * 19 18 17 21 21 N 1.31856 * 120.76345 * 359.72455 * 20 19 18 22 22 C 1.31885 * 121.72678 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00245 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47347 * 300.00584 * 9 7 2 25 25 H 1.09003 * 109.46982 * 60.00603 * 9 7 2 26 26 H 1.07996 * 119.99861 * 232.09829 * 11 10 9 27 27 H 1.07989 * 120.00259 * 192.25628 * 12 11 10 28 28 H 0.96692 * 113.99742 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47509 * 209.99450 * 16 10 9 30 30 H 1.08991 * 109.47388 * 330.00490 * 16 10 9 31 31 H 1.07999 * 120.79068 * 0.02562 * 18 17 16 32 32 H 1.07994 * 120.41523 * 180.21959 * 19 18 17 33 33 H 1.07996 * 119.61816 * 179.75146 * 20 19 18 34 34 H 1.08001 * 119.61562 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 0.0040 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7567 -4.8928 0.1650 12 6 0.7633 -5.3677 -0.6165 13 6 0.3627 -4.6489 -1.7638 14 8 0.9928 -3.6703 -2.1196 15 8 -0.7191 -5.0469 -2.4659 16 6 3.6339 -3.3530 -0.1781 17 6 4.2757 -3.1347 1.1679 18 6 4.3567 -1.8604 1.7087 19 6 4.9514 -1.7077 2.9517 20 6 5.4499 -2.8215 3.6012 21 7 5.3596 -4.0179 3.0542 22 6 4.7962 -4.2011 1.8759 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 0.8896 25 1 0.6241 -2.5567 -0.8904 26 1 2.1982 -5.5251 0.9209 27 1 0.2752 -6.2973 -0.3640 28 1 -0.9152 -4.4930 -3.2338 29 1 4.1002 -4.2075 -0.6686 30 1 3.7682 -2.4632 -0.7931 31 1 3.9624 -1.0076 1.1760 32 1 5.0285 -0.7304 3.4046 33 1 5.9182 -2.7106 4.5679 34 1 4.7410 -5.1961 1.4596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211534297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:35 Heat of formation + Delta-G solvation = 5.836848 kcal Electronic energy + Delta-G solvation = -19792.687675 eV Core-core repulsion = 16692.745624 eV Total energy + Delta-G solvation = -3099.942050 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99579 -39.48573 -37.09455 -34.98092 -33.09221 -32.58502 -31.49142 -30.18856 -27.47842 -25.87426 -23.61963 -23.14734 -22.34593 -21.03187 -18.47545 -17.37004 -17.12151 -16.64769 -15.91350 -15.83686 -15.10265 -14.98610 -14.68096 -14.26422 -13.82454 -13.59805 -13.35938 -12.76323 -12.53336 -12.49112 -12.18307 -11.79497 -11.41854 -11.06426 -11.01833 -10.90080 -10.44966 -10.11329 -9.61492 -9.36352 -9.33085 -9.01940 -8.89883 -8.61649 -8.26118 -6.93911 -6.19225 -4.19727 1.43510 1.71638 1.89134 3.17485 3.23685 3.26499 3.88477 3.99842 4.25308 4.27231 4.47759 4.72619 5.16302 5.17984 5.26300 5.40305 5.51812 5.67941 5.72379 6.01127 6.04926 6.19144 6.37325 6.55482 6.59544 6.80595 6.83925 7.06797 7.14600 7.39063 7.64491 7.65800 7.91182 8.09257 8.26137 8.59380 8.78682 8.90757 9.40867 10.92001 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.009950 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.087157 B = 2813.474314 C = 4669.100649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.587 5.587 11 C 0.225 3.775 12 C -0.325 4.325 13 C 0.481 3.519 14 O -0.492 6.492 15 O -0.530 6.530 16 C 0.170 3.830 17 C -0.142 4.142 18 C -0.053 4.053 19 C -0.179 4.179 20 C 0.085 3.915 21 N -0.496 5.496 22 C 0.096 3.904 23 H 0.263 0.737 24 H 0.016 0.984 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.394 0.606 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.398 -6.511 1.618 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.096 0.904 9 C 0.120 3.880 10 N -0.293 5.293 11 C 0.094 3.906 12 C -0.353 4.353 13 C 0.331 3.669 14 O -0.383 6.383 15 O -0.340 6.340 16 C 0.046 3.954 17 C -0.146 4.146 18 C -0.079 4.079 19 C -0.199 4.199 20 C -0.072 4.072 21 N -0.204 5.204 22 C -0.062 4.062 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.083 0.917 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.249 0.751 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.177 0.823 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.881 -6.935 2.316 10.040 hybrid contribution -0.384 2.043 -0.662 2.182 sum 6.497 -4.892 1.653 8.299 Atomic orbital electron populations 1.69956 1.06035 1.26891 1.49547 1.24908 0.94832 0.99047 0.95112 0.86592 0.79919 0.83889 0.77941 1.19520 1.20713 1.20822 1.21599 0.93706 0.90194 1.51781 0.90363 1.19761 0.88857 0.81861 0.97547 1.46616 1.05966 1.04205 1.72486 1.21363 0.91950 0.86280 0.90959 1.20648 1.12386 1.04283 0.97991 1.19369 0.78919 0.83024 0.85628 1.90949 1.53893 1.25145 1.68319 1.85042 1.47647 1.58222 1.43067 1.20230 0.80911 1.02672 0.91585 1.21548 0.98870 0.94195 0.99944 1.22355 0.92107 0.98959 0.94484 1.22184 1.00722 1.00220 0.96773 1.22600 0.97251 0.88141 0.99255 1.67606 1.15887 1.25417 1.11532 1.22562 0.94543 0.98510 0.90549 0.92711 0.96637 0.91703 0.86454 0.85665 0.75144 0.91666 0.87813 0.82307 0.85374 0.83584 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -13.60 7.31 -34.44 -0.25 -13.85 16 8 H 0.08 1.83 2.48 -52.49 -0.13 1.70 16 9 C 0.24 5.93 4.87 -5.19 -0.03 5.90 16 10 N -0.59 -11.77 1.81 -177.28 -0.32 -12.09 16 11 C 0.22 3.88 9.87 -16.58 -0.16 3.71 16 12 C -0.33 -5.71 9.81 -39.60 -0.39 -6.10 16 13 C 0.48 9.53 7.26 31.85 0.23 9.76 16 14 O -0.49 -11.38 12.68 -19.43 -0.25 -11.62 16 15 O -0.53 -9.04 13.54 -41.24 -0.56 -9.59 16 16 C 0.17 3.01 5.31 -5.19 -0.03 2.98 16 17 C -0.14 -2.40 5.45 -104.48 -0.57 -2.97 16 18 C -0.05 -0.94 9.00 -39.27 -0.35 -1.29 16 19 C -0.18 -2.75 10.11 -39.44 -0.40 -3.14 16 20 C 0.08 1.24 11.18 -17.54 -0.20 1.04 16 21 N -0.50 -7.94 10.36 -13.25 -0.14 -8.08 16 22 C 0.10 1.48 10.86 -17.55 -0.19 1.29 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 1.83 4.55 -54.03 -0.25 1.58 16 26 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 28 H 0.39 5.28 8.98 45.56 0.41 5.69 16 29 H 0.06 0.98 7.99 -51.93 -0.41 0.57 16 30 H 0.10 2.03 5.98 -51.93 -0.31 1.72 16 31 H 0.16 3.10 5.04 -52.49 -0.26 2.83 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -31.22 290.79 -6.22 -37.45 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -2.63 Total: 10.10 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.43 Total: -1.06 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.28 Total: -44.73 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.80 Total: -21.22 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.22 -6.22 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211534297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.286 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds