Wall clock time and date at job start Mon Mar 30 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47225 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99590 * 3 2 1 6 6 H 1.48497 * 109.47276 * 60.00059 * 3 2 1 7 7 C 1.37878 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00257 * 180.27803 * 7 2 1 9 9 C 1.50699 * 119.99536 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46868 * 180.02562 * 9 7 2 11 11 C 1.36585 * 119.99815 * 171.95770 * 10 9 7 12 12 C 1.35023 * 120.00279 * 52.09288 * 11 10 9 13 13 C 1.41191 * 119.99633 * 12.25915 * 12 11 10 14 14 O 1.21711 * 120.00401 * 6.93139 * 13 12 11 15 15 O 1.34974 * 119.99836 * 186.94104 * 13 12 11 16 16 C 1.46494 * 120.00059 * 351.95326 * 10 9 7 17 17 C 1.50705 * 109.46952 * 89.99984 * 16 10 9 18 18 C 1.38674 * 120.41804 * 269.72373 * 17 16 10 19 19 C 1.38637 * 118.41814 * 179.78132 * 18 17 16 20 20 C 1.38230 * 119.15940 * 0.51188 * 19 18 17 21 21 N 1.31856 * 120.76345 * 359.72455 * 20 19 18 22 22 C 1.31885 * 121.72678 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00245 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47347 * 300.00584 * 9 7 2 25 25 H 1.09003 * 109.46982 * 60.00603 * 9 7 2 26 26 H 1.07996 * 119.99861 * 232.09829 * 11 10 9 27 27 H 1.07989 * 120.00259 * 192.25628 * 12 11 10 28 28 H 0.96692 * 113.99742 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47509 * 209.99450 * 16 10 9 30 30 H 1.08991 * 109.47388 * 330.00490 * 16 10 9 31 31 H 1.07999 * 120.79068 * 0.02562 * 18 17 16 32 32 H 1.07994 * 120.41523 * 180.21959 * 19 18 17 33 33 H 1.07996 * 119.61816 * 179.75146 * 20 19 18 34 34 H 1.08001 * 119.61562 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 0.0040 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7567 -4.8928 0.1650 12 6 0.7633 -5.3677 -0.6165 13 6 0.3627 -4.6489 -1.7638 14 8 0.9928 -3.6703 -2.1196 15 8 -0.7191 -5.0469 -2.4659 16 6 3.6339 -3.3530 -0.1781 17 6 4.2757 -3.1347 1.1679 18 6 4.3567 -1.8604 1.7087 19 6 4.9514 -1.7077 2.9517 20 6 5.4499 -2.8215 3.6012 21 7 5.3596 -4.0179 3.0542 22 6 4.7962 -4.2011 1.8759 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 0.8896 25 1 0.6241 -2.5567 -0.8904 26 1 2.1982 -5.5251 0.9209 27 1 0.2752 -6.2973 -0.3640 28 1 -0.9152 -4.4930 -3.2338 29 1 4.1002 -4.2075 -0.6686 30 1 3.7682 -2.4632 -0.7931 31 1 3.9624 -1.0076 1.1760 32 1 5.0285 -0.7304 3.4046 33 1 5.9182 -2.7106 4.5679 34 1 4.7410 -5.1961 1.4596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211534297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:35 Heat of formation + Delta-G solvation = -14.749064 kcal Electronic energy + Delta-G solvation = -19793.580347 eV Core-core repulsion = 16692.745624 eV Total energy + Delta-G solvation = -3100.834723 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38002 -40.87010 -38.57893 -36.50960 -34.93123 -34.03023 -32.72170 -31.70944 -29.24968 -27.30464 -25.33321 -24.41140 -23.80069 -22.48245 -19.96567 -18.89884 -18.76600 -17.99964 -17.50713 -17.21046 -16.69870 -16.44067 -16.14914 -15.85736 -15.32133 -14.98463 -14.59210 -14.21719 -14.07237 -14.04980 -13.75073 -13.34847 -12.87974 -12.77293 -12.69389 -12.47448 -11.92820 -11.91742 -11.29730 -10.95411 -10.85390 -10.59470 -10.25462 -10.15234 -9.78539 -8.49821 -8.21676 -6.27293 0.24960 0.44469 0.45845 1.36625 1.38803 1.48163 2.32652 2.40677 2.64700 2.91307 3.11713 3.16346 3.63713 3.98822 4.00377 4.20365 4.23740 4.42793 4.51265 4.76846 4.84168 4.86902 4.97848 5.12747 5.17186 5.31698 5.53189 5.57179 5.64872 5.71872 5.88273 5.91405 6.06515 6.31666 6.87191 7.02774 7.08513 7.37619 7.38835 8.91128 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.009950 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.087157 B = 2813.474314 C = 4669.100649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.250 1.250 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.098 0.902 9 C 0.254 3.746 10 N -0.598 5.598 11 C 0.227 3.773 12 C -0.333 4.333 13 C 0.476 3.524 14 O -0.535 6.535 15 O -0.524 6.524 16 C 0.175 3.825 17 C -0.151 4.151 18 C -0.078 4.078 19 C -0.181 4.181 20 C 0.088 3.912 21 N -0.507 5.507 22 C 0.101 3.899 23 H 0.261 0.739 24 H -0.023 1.023 25 H 0.036 0.964 26 H 0.164 0.836 27 H 0.156 0.844 28 H 0.409 0.591 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.181 0.819 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.308 -7.783 2.786 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.173 1.173 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.115 0.885 9 C 0.134 3.866 10 N -0.305 5.305 11 C 0.099 3.901 12 C -0.360 4.360 13 C 0.327 3.673 14 O -0.429 6.429 15 O -0.335 6.335 16 C 0.051 3.949 17 C -0.155 4.155 18 C -0.104 4.104 19 C -0.201 4.201 20 C -0.068 4.068 21 N -0.216 5.216 22 C -0.056 4.056 23 H 0.070 0.930 24 H -0.006 1.006 25 H 0.052 0.948 26 H 0.181 0.819 27 H 0.174 0.826 28 H 0.265 0.735 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.198 0.802 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.807 -8.252 3.477 12.560 hybrid contribution -1.002 2.318 -1.048 2.734 sum 7.805 -5.934 2.428 10.101 Atomic orbital electron populations 1.70113 1.07877 1.27518 1.51814 1.25795 0.95516 1.02782 0.95114 0.85584 0.79787 0.79414 0.77469 1.17295 1.21318 1.20554 1.22082 0.94872 0.90491 1.49693 0.88493 1.19164 0.89205 0.83818 0.94417 1.46404 1.06204 1.04179 1.73716 1.22025 0.91613 0.85420 0.91030 1.21058 1.12452 1.05194 0.97279 1.19921 0.78773 0.82442 0.86137 1.90942 1.55308 1.26936 1.69674 1.85004 1.46526 1.58325 1.43663 1.20195 0.79802 1.02731 0.92136 1.21449 0.99764 0.94538 0.99717 1.22264 0.93680 0.98655 0.95800 1.22413 1.00074 1.01733 0.95842 1.23144 0.96159 0.87370 1.00173 1.67713 1.16156 1.26030 1.11713 1.22907 0.93383 0.99167 0.90157 0.93009 1.00553 0.94753 0.81926 0.82623 0.73466 0.88709 0.90544 0.84807 0.83326 0.80225 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -27.91 7.31 25.60 0.19 -27.73 16 8 H 0.10 4.63 2.48 -2.91 -0.01 4.62 16 9 C 0.25 13.13 4.87 85.63 0.42 13.55 16 10 N -0.60 -23.80 1.81 -714.78 -1.29 -25.09 16 11 C 0.23 7.39 9.87 83.21 0.82 8.21 16 12 C -0.33 -11.14 9.81 22.26 0.22 -10.92 16 13 C 0.48 18.82 7.26 68.55 0.50 19.32 16 14 O -0.53 -25.34 12.68 19.15 0.24 -25.10 16 15 O -0.52 -17.60 13.54 -58.92 -0.80 -18.40 16 16 C 0.17 6.02 5.31 85.64 0.45 6.48 16 17 C -0.15 -4.87 5.45 -19.77 -0.11 -4.97 16 18 C -0.08 -2.68 9.00 22.47 0.20 -2.48 16 19 C -0.18 -5.15 10.11 22.36 0.23 -4.92 16 20 C 0.09 2.29 11.18 84.69 0.95 3.24 16 21 N -0.51 -14.54 10.36 -195.84 -2.03 -16.57 16 22 C 0.10 2.80 10.86 84.67 0.92 3.72 16 23 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 24 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 25 H 0.04 2.07 4.55 -35.74 -0.16 1.90 16 26 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.16 4.18 8.06 -2.92 -0.02 4.16 16 28 H 0.41 10.94 8.98 -74.06 -0.67 10.28 16 29 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 30 H 0.08 3.02 5.98 -2.39 -0.01 3.01 16 31 H 0.13 5.23 5.04 -2.91 -0.01 5.22 16 32 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -70.17 290.79 4.01 -66.16 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.33 Total: 25.80 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.25 Total: 4.30 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -3.03 Total: -96.87 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.56 Total: -43.50 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.17 4.01 -66.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211534297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.410 kcal (2) G-P(sol) polarization free energy of solvation -70.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds