Wall clock time and date at job start Mon Mar 30 2020 04:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99962 * 2 1 4 4 O 1.21588 * 119.99844 * 180.02562 * 3 2 1 5 5 N 1.34777 * 119.99974 * 359.97438 * 3 2 1 6 6 C 1.37195 * 119.99853 * 180.02562 * 5 3 2 7 7 H 1.08005 * 120.00016 * 0.02562 * 6 5 3 8 8 C 1.38870 * 119.99966 * 180.02562 * 6 5 3 9 9 N 1.31480 * 120.00175 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00194 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47363 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47233 * 300.00205 * 10 8 6 13 13 H 1.48508 * 109.46883 * 60.00009 * 10 8 6 14 14 C 1.46504 * 119.99794 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.00666 * 179.29917 * 14 2 1 16 16 C 1.53879 * 110.02484 * 57.92122 * 14 2 1 17 17 C 1.54188 * 108.68574 * 193.57181 * 16 14 2 18 18 S 1.82912 * 105.11404 * 27.83603 * 17 16 14 19 19 O 1.42103 * 109.35608 * 244.51743 * 18 17 16 20 20 O 1.42107 * 109.35548 * 111.31302 * 18 17 16 21 21 C 1.55045 * 110.02990 * 300.68075 * 14 2 1 22 22 H 1.08999 * 109.47256 * 90.00260 * 1 2 3 23 23 H 1.09003 * 109.47332 * 210.00848 * 1 2 3 24 24 H 1.09007 * 109.47355 * 330.00240 * 1 2 3 25 25 H 0.96996 * 119.99887 * 0.02562 * 5 3 2 26 26 H 0.97001 * 119.99566 * 359.97438 * 9 8 6 27 27 H 1.08997 * 109.64825 * 313.37724 * 16 14 2 28 28 H 1.08998 * 109.64536 * 73.67530 * 16 14 2 29 29 H 1.09004 * 110.27786 * 268.93862 * 17 16 14 30 30 H 1.09008 * 110.42609 * 146.80968 * 17 16 14 31 31 H 1.09003 * 110.78815 * 279.99640 * 21 14 2 32 32 H 1.09005 * 110.78863 * 43.45558 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1509 3.5225 -0.0011 7 1 3.2310 3.5225 -0.0015 8 6 1.4566 4.7252 -0.0011 9 7 0.1418 4.7252 0.0000 10 14 2.3906 6.3429 -0.0025 11 1 1.4256 7.4717 -0.0029 12 1 3.2453 6.4222 1.2093 13 1 3.2434 6.4210 -1.2158 14 6 2.1975 -1.2688 0.0006 15 1 3.2708 -1.0797 -0.0120 16 6 1.7959 -2.1096 -1.2241 17 6 2.3061 -3.5506 -1.0227 18 16 2.3592 -3.7888 0.7901 19 8 3.7059 -3.9819 1.2005 20 8 1.3597 -4.7241 1.1717 21 6 1.8193 -2.0997 1.2537 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5140 24 1 -0.3634 0.8901 0.5138 25 1 0.4950 2.3344 -0.0005 26 1 -0.3432 3.8852 0.0003 27 1 0.7106 -2.1162 -1.3241 28 1 2.2423 -1.6842 -2.1229 29 1 3.3035 -3.6612 -1.4484 30 1 1.6196 -4.2643 -1.4783 31 1 2.3625 -1.7468 2.1303 32 1 0.7434 -2.0713 1.4266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:28 Heat of formation + Delta-G solvation = -85.049128 kcal Electronic energy + Delta-G solvation = -18240.295030 eV Core-core repulsion = 15136.022725 eV Total energy + Delta-G solvation = -3104.272305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 262.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.59425 -37.19322 -36.89248 -36.13492 -34.40212 -33.50259 -30.98194 -29.60793 -26.78870 -25.32929 -24.16625 -21.50709 -19.35656 -18.99998 -18.28915 -17.55340 -16.88357 -16.49991 -15.79606 -15.32983 -14.94188 -14.51253 -14.29386 -14.07469 -13.66222 -13.32591 -12.88685 -12.71121 -12.42317 -12.28173 -12.24185 -12.17758 -11.93882 -11.17363 -11.11692 -10.99825 -10.85442 -10.55373 -10.20403 -9.83900 -9.66004 -9.03087 -8.34825 -8.03833 -6.71930 -3.87647 -0.13118 2.32878 3.22731 3.33896 3.37022 3.42858 3.56090 3.84327 4.02869 4.27971 4.35682 4.43045 4.57004 4.61789 4.83209 5.14529 5.19751 5.29929 5.33429 5.39064 5.50157 5.62217 5.84435 5.86771 5.90353 6.79760 7.26920 8.01120 8.07776 8.69256 8.76691 9.48697 9.86823 10.71537 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.049275 B = 0.004604 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.104568 B = 6080.127449 C = 6278.998831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.630 5.630 3 C 0.658 3.342 4 O -0.615 6.615 5 N -0.592 5.592 6 C -0.373 4.373 7 H 0.098 0.902 8 C -0.012 4.012 9 N -0.909 5.909 10 Si 1.093 2.907 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.169 3.831 15 H 0.124 0.876 16 C -0.128 4.128 17 C -0.587 4.587 18 S 2.393 3.607 19 O -0.935 6.935 20 O -0.942 6.942 21 C -0.605 4.605 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.376 0.624 26 H 0.257 0.743 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -14.281 -1.731 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.369 5.369 3 C 0.361 3.639 4 O -0.497 6.497 5 N -0.234 5.234 6 C -0.502 4.502 7 H 0.116 0.884 8 C -0.213 4.213 9 N -0.548 5.548 10 Si 0.919 3.081 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.211 1.211 14 C 0.061 3.939 15 H 0.142 0.858 16 C -0.167 4.167 17 C -0.718 4.718 18 S 2.576 3.424 19 O -0.932 6.932 20 O -0.939 6.939 21 C -0.736 4.736 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.212 0.788 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.687 -13.313 -1.176 13.382 hybrid contribution -0.770 -1.087 -0.478 1.415 sum -1.457 -14.400 -1.654 14.568 Atomic orbital electron populations 1.21652 0.80919 1.02696 1.01388 1.46679 1.05256 1.03823 1.81143 1.15692 0.85398 0.80020 0.82827 1.90746 1.11702 1.85614 1.61673 1.41219 1.07958 1.03891 1.70366 1.20424 0.94337 0.83077 1.52405 0.88367 1.26439 0.96602 1.02338 0.95945 1.70945 1.06399 1.28962 1.48526 0.83104 0.74353 0.73654 0.76982 1.20472 1.21099 1.21105 1.21265 1.00112 0.83722 0.88850 0.85791 1.22320 1.03094 0.90387 1.00915 1.30432 1.11281 1.05130 1.24917 1.08877 0.75635 0.78198 0.79715 1.93634 1.34392 1.84897 1.80260 1.93607 1.60402 1.58746 1.81155 1.31114 1.12717 1.21549 1.08230 0.92996 0.91446 0.91194 0.78837 0.93137 0.89552 0.88418 0.84299 0.84343 0.83946 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 9.02 59.85 0.54 1.55 16 2 N -0.63 -10.62 2.82 -177.89 -0.50 -11.12 16 3 C 0.66 15.29 8.23 -86.92 -0.72 14.58 16 4 O -0.62 -16.49 15.26 5.29 0.08 -16.40 16 5 N -0.59 -14.67 5.15 -15.34 -0.08 -14.75 16 6 C -0.37 -10.38 9.68 -14.92 -0.14 -10.52 16 7 H 0.10 2.89 7.16 -52.48 -0.38 2.51 16 8 C -0.01 -0.32 5.50 -17.47 -0.10 -0.42 16 9 N -0.91 -25.24 13.69 55.49 0.76 -24.48 16 10 Si 1.09 24.13 29.92 -169.99 -5.09 19.04 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.17 2.28 2.97 -66.39 -0.20 2.08 16 15 H 0.12 1.92 6.94 -51.93 -0.36 1.56 16 16 C -0.13 -1.25 5.88 -25.65 -0.15 -1.40 16 17 C -0.59 -4.48 7.26 37.78 0.27 -4.21 16 18 S 2.39 24.22 6.11 -107.50 -0.66 23.56 16 19 O -0.93 -13.00 18.15 -57.71 -1.05 -14.04 16 20 O -0.94 -12.03 18.15 -57.71 -1.05 -13.08 16 21 C -0.61 -6.48 6.78 38.24 0.26 -6.22 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.65 6.29 -51.93 -0.33 0.33 16 24 H 0.07 1.00 6.36 -51.92 -0.33 0.67 16 25 H 0.38 8.57 4.46 -40.82 -0.18 8.39 16 26 H 0.26 6.87 6.77 -40.82 -0.28 6.59 16 27 H 0.09 0.71 7.28 -51.93 -0.38 0.33 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.14 0.77 8.14 -51.92 -0.42 0.34 16 31 H 0.14 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.14 1.23 6.34 -51.93 -0.33 0.91 16 LS Contribution 278.20 15.07 4.19 4.19 Total: -1.00 -37.58 278.20 -7.08 -44.66 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.47 Total: 6.98 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.23 Total: -4.56 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.18 Total: -50.35 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -2.01 Total: -43.53 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.09 Total: 19.04 kcal Atomic # 16 Polarization: 24.22 SS G_CDS: -0.66 Total: 23.56 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -37.58 -7.08 -44.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.386 kcal (2) G-P(sol) polarization free energy of solvation -37.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds