Wall clock time and date at job start Mon Mar 30 2020 04:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35528 * 116.99895 * 2 1 4 4 C 1.39323 * 120.48061 * 180.29830 * 3 2 1 5 5 C 1.39217 * 118.23942 * 180.21017 * 4 3 2 6 6 C 1.48537 * 120.51142 * 179.76117 * 5 4 3 7 7 N 1.30691 * 126.40286 * 359.72485 * 6 5 4 8 8 O 1.21296 * 110.10131 * 179.74765 * 7 6 5 9 9 C 1.33670 * 110.01789 * 0.40388 * 8 7 6 10 10 C 1.50698 * 126.44298 * 179.86320 * 9 8 7 11 11 C 1.50706 * 109.47294 * 269.68746 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00200 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00139 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47145 * 89.99836 * 15 13 11 17 17 H 1.48496 * 109.47547 * 210.00333 * 15 13 11 18 18 H 1.48499 * 109.47030 * 330.00237 * 15 13 11 19 19 N 1.30975 * 107.10569 * 359.60416 * 9 8 7 20 20 N 1.33262 * 118.97110 * 359.49458 * 5 4 3 21 21 C 1.31610 * 120.86374 * 0.27032 * 20 5 4 22 22 N 1.31837 * 121.94620 * 359.97438 * 21 20 5 23 23 H 1.08997 * 109.46845 * 60.00154 * 1 2 3 24 24 H 1.08996 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47019 * 300.00343 * 1 2 3 26 26 H 1.08003 * 120.87714 * 359.97438 * 4 3 2 27 27 H 1.09001 * 109.46665 * 149.69128 * 10 9 8 28 28 H 1.09000 * 109.47722 * 29.69459 * 10 9 8 29 29 H 0.96999 * 120.00061 * 179.97438 * 14 13 11 30 30 H 1.08000 * 119.02815 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 3.4350 1.2922 -0.0063 5 6 4.0180 2.5564 -0.0015 6 6 5.4959 2.7053 -0.0024 7 7 6.3730 1.7364 -0.0025 8 8 7.4972 2.1919 -0.0084 9 6 7.4498 3.5277 -0.0040 10 6 8.6295 4.4654 -0.0058 11 6 9.0238 4.7796 1.4144 12 1 8.4752 4.3434 2.2361 13 6 10.0848 5.6237 1.6646 14 7 10.4292 5.8974 2.9040 15 14 11.0341 6.3774 0.2433 16 1 10.4141 7.6729 -0.1344 17 1 12.4431 6.6040 0.6538 18 1 10.9997 5.4546 -0.9197 19 7 6.1851 3.8683 -0.0033 20 7 3.2297 3.6308 -0.0014 21 6 1.9194 3.5068 -0.0005 22 7 1.3303 2.3274 -0.0001 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 4.0445 0.4006 -0.0108 27 1 8.3597 5.3876 -0.5205 28 1 9.4673 3.9943 -0.5199 29 1 11.1759 6.4910 3.0800 30 1 1.3087 4.3976 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234955754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:50 Heat of formation + Delta-G solvation = 61.398728 kcal Electronic energy + Delta-G solvation = -18255.685686 eV Core-core repulsion = 15054.612636 eV Total energy + Delta-G solvation = -3201.073050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.66052 -42.41654 -39.70160 -37.15874 -35.94861 -34.62294 -33.83268 -32.94345 -30.93685 -28.71453 -26.57400 -26.10226 -25.30410 -24.08020 -22.47897 -19.85761 -19.57537 -19.36848 -18.67864 -18.00135 -17.36962 -16.79804 -16.73397 -16.32977 -15.95951 -15.49708 -15.43881 -15.02124 -14.51653 -14.20443 -13.48254 -13.36133 -13.09868 -13.00600 -12.65614 -12.46881 -12.23659 -12.10179 -11.99591 -11.73276 -11.52652 -10.81862 -10.79124 -10.74902 -10.37749 -8.32742 -6.45166 -0.88971 -0.19723 0.22770 1.24532 1.47625 1.48731 1.53186 1.59172 1.79338 2.03322 2.37534 2.56328 2.69543 2.89568 3.04173 3.36775 3.60213 3.84741 3.93501 4.31810 4.38904 4.38972 4.50865 4.68375 4.70920 4.80493 4.91883 5.04646 5.32656 5.54614 5.89295 6.09395 6.57610 6.76978 6.97410 7.18100 8.83494 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.047382 B = 0.003833 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.796041 B = 7303.618700 C = 7503.104821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.372 3.628 4 C -0.210 4.210 5 C 0.268 3.732 6 C 0.192 3.808 7 N -0.373 5.373 8 O 0.080 5.920 9 C 0.239 3.761 10 C 0.074 3.926 11 C -0.541 4.541 12 H 0.025 0.975 13 C 0.020 3.980 14 N -0.941 5.941 15 Si 0.954 3.046 16 H -0.264 1.264 17 H -0.282 1.282 18 H -0.225 1.225 19 N -0.485 5.485 20 N -0.534 5.534 21 C 0.347 3.653 22 N -0.565 5.565 23 H 0.068 0.932 24 H 0.131 0.869 25 H 0.066 0.934 26 H 0.166 0.834 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.273 0.727 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.114 -8.795 -9.769 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.207 6.207 3 C 0.184 3.816 4 C -0.236 4.236 5 C 0.125 3.875 6 C -0.079 4.079 7 N -0.082 5.082 8 O 0.020 5.980 9 C 0.020 3.980 10 C 0.035 3.965 11 C -0.580 4.580 12 H 0.044 0.956 13 C -0.179 4.179 14 N -0.579 5.579 15 Si 0.774 3.226 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.147 1.147 19 N -0.218 5.218 20 N -0.254 5.254 21 C 0.060 3.940 22 N -0.296 5.296 23 H 0.087 0.913 24 H 0.149 0.851 25 H 0.084 0.916 26 H 0.183 0.817 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -18.031 -8.806 -9.659 22.270 hybrid contribution 0.988 -0.122 0.292 1.038 sum -17.043 -8.928 -9.367 21.399 Atomic orbital electron populations 1.23328 0.74162 1.05667 1.03260 1.86270 1.25696 1.22588 1.86129 1.19907 0.88609 0.85993 0.87115 1.21747 0.94022 0.99165 1.08666 1.17871 0.87121 0.89413 0.93076 1.23559 0.95596 0.85007 1.03763 1.74744 0.90272 1.22389 1.20803 1.85262 1.23978 1.23271 1.65520 1.29501 0.95771 0.82468 0.90235 1.18566 0.87305 0.92145 0.98457 1.20748 1.16377 1.30638 0.90220 0.95630 1.25913 0.97290 0.95566 0.99147 1.70025 1.29144 1.36857 1.21923 0.85621 0.77393 0.80074 0.79470 1.18836 1.20799 1.14747 1.72161 1.02055 1.26120 1.21485 1.68324 1.07494 1.32810 1.16809 1.25569 0.86777 0.95065 0.86589 1.68221 1.41397 0.99155 1.20823 0.91335 0.85137 0.91558 0.81684 0.89947 0.89270 0.91759 0.73624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.41 113.37 1.18 1.54 16 2 O -0.30 -6.15 10.49 -88.32 -0.93 -7.08 16 3 C 0.37 9.03 7.53 84.81 0.64 9.67 16 4 C -0.21 -5.91 9.78 22.77 0.22 -5.69 16 5 C 0.27 9.07 6.79 41.91 0.28 9.36 16 6 C 0.19 7.63 7.94 137.36 1.09 8.72 16 7 N -0.37 -14.57 11.92 -59.27 -0.71 -15.28 16 8 O 0.08 3.27 11.29 74.60 0.84 4.11 16 9 C 0.24 10.29 7.69 88.36 0.68 10.97 16 10 C 0.07 3.20 4.67 29.10 0.14 3.34 16 11 C -0.54 -29.70 9.65 25.60 0.25 -29.45 16 12 H 0.03 1.61 7.98 -2.91 -0.02 1.59 16 13 C 0.02 1.09 5.47 84.65 0.46 1.55 16 14 N -0.94 -56.40 13.96 21.44 0.30 -56.10 16 15 Si 0.95 39.21 27.47 68.60 1.88 41.10 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.23 -7.92 6.54 99.48 0.65 -7.27 16 19 N -0.49 -21.42 11.57 -302.65 -3.50 -24.93 16 20 N -0.53 -16.96 10.40 -189.21 -1.97 -18.92 16 21 C 0.35 7.94 12.28 180.93 2.22 10.16 16 22 N -0.56 -12.71 9.37 -313.02 -2.93 -15.64 16 23 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 24 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.17 4.35 7.94 -2.91 -0.02 4.32 16 27 H 0.08 3.32 7.57 -2.39 -0.02 3.31 16 28 H 0.09 3.35 7.20 -2.39 -0.02 3.34 16 29 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.25 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -69.26 280.86 1.28 -67.98 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.13 Total: 4.58 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 7.16 Total: 20.17 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -8.81 Total: -130.87 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -0.08 Total: -2.97 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.88 Total: 41.10 kcal Total: -69.26 1.28 -67.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234955754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.381 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds