Wall clock time and date at job start Mon Mar 30 2020 04:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00452 * 2 1 4 4 H 1.48494 * 109.47483 * 240.00238 * 3 2 1 5 5 H 1.48500 * 109.46869 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46826 * 119.99737 * 3 2 1 7 7 C 1.37884 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00091 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99613 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40442 * 68.46632 * 9 7 2 11 11 O 1.42103 * 106.40462 * 295.54624 * 9 7 2 12 12 N 1.65604 * 107.21789 * 182.00447 * 9 7 2 13 13 C 1.46499 * 119.99939 * 63.73235 * 12 9 7 14 14 H 1.09002 * 109.47044 * 0.03003 * 13 12 9 15 15 C 1.53000 * 109.46940 * 240.03054 * 13 12 9 16 16 N 1.46895 * 109.47234 * 56.49078 * 15 13 12 17 17 C 1.52994 * 109.46884 * 120.02767 * 13 12 9 18 18 C 1.54269 * 110.03337 * 57.91192 * 17 13 12 19 19 C 1.54967 * 104.16052 * 217.13615 * 18 17 13 20 20 C 1.54886 * 102.77834 * 37.88256 * 19 18 17 21 21 C 1.53876 * 110.03780 * 300.69070 * 17 13 12 22 22 H 0.97005 * 119.99886 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99670 * 243.73019 * 12 9 7 24 24 H 1.08996 * 109.46788 * 296.48535 * 15 13 12 25 25 H 1.09001 * 109.46873 * 176.48976 * 15 13 12 26 26 H 1.00896 * 111.00219 * 66.57437 * 16 15 13 27 27 H 1.00900 * 110.99519 * 190.53307 * 16 15 13 28 28 H 1.08999 * 110.01791 * 179.29978 * 17 13 12 29 29 H 1.08997 * 110.48486 * 335.77649 * 18 17 13 30 30 H 1.09000 * 110.49019 * 98.42182 * 18 17 13 31 31 H 1.09002 * 110.71620 * 279.57115 * 19 18 17 32 32 H 1.08992 * 110.92640 * 156.29224 * 19 18 17 33 33 H 1.09004 * 110.48913 * 203.40858 * 20 19 18 34 34 H 1.09002 * 110.59989 * 80.82306 * 20 19 18 35 35 H 1.08999 * 110.03489 * 238.57197 * 21 17 13 36 36 H 1.09001 * 110.02478 * 359.95369 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1234 -2.7200 -0.0005 10 8 0.4889 -2.8170 -1.2684 11 8 0.4141 -2.7738 1.2296 12 7 2.2473 -3.9350 0.0541 13 6 3.1225 -4.0714 1.2210 14 1 2.8882 -3.2901 1.9441 15 6 4.5822 -3.9390 0.7820 16 7 4.7710 -2.6571 0.0901 17 6 2.9055 -5.4427 1.8637 18 6 3.1831 -6.5583 0.8349 19 6 2.1214 -7.6411 1.1542 20 6 0.8712 -6.8000 1.5125 21 6 1.4363 -5.5965 2.2947 22 1 -0.4850 0.8401 0.0004 23 1 2.3261 -4.5564 -0.6866 24 1 4.8341 -4.7569 0.1070 25 1 5.2299 -3.9781 1.6578 26 1 4.6478 -1.8822 0.7244 27 1 5.6743 -2.6177 -0.3578 28 1 3.5617 -5.5586 2.7262 29 1 3.0514 -6.1828 -0.1798 30 1 4.1885 -6.9579 0.9674 31 1 2.4341 -8.2493 2.0030 32 1 1.9292 -8.2668 0.2826 33 1 0.1903 -7.3763 2.1389 34 1 0.3636 -6.4632 0.6085 35 1 1.3797 -5.7877 3.3663 36 1 0.8782 -4.6937 2.0468 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236284249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:32 Heat of formation + Delta-G solvation = -107.158037 kcal Electronic energy + Delta-G solvation = -19434.542210 eV Core-core repulsion = 16465.144285 eV Total energy + Delta-G solvation = -2969.397925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.78214 -35.20694 -34.96887 -33.78053 -32.98400 -32.05490 -29.05930 -28.38978 -25.93413 -25.34610 -21.74569 -20.24936 -19.08115 -18.83911 -17.25850 -16.23924 -15.69567 -15.56563 -15.27647 -14.79411 -13.97724 -13.84907 -13.68144 -13.33475 -13.05284 -12.78175 -12.75162 -11.88792 -11.50767 -11.11729 -10.94008 -10.82099 -10.75595 -10.64395 -10.49800 -10.47314 -10.37004 -10.21565 -10.07843 -10.01555 -9.78221 -9.09601 -8.86098 -8.30567 -8.11220 -6.54180 -5.10435 2.56915 3.15090 3.20214 3.25565 4.17448 4.70187 4.79550 4.85672 4.89185 5.06341 5.16009 5.38023 5.62977 5.67764 5.78598 5.78893 5.81403 5.90635 5.98537 6.02859 6.06407 6.13069 6.25814 6.28252 6.45061 6.51379 6.64736 6.76821 6.93820 7.18562 7.49337 7.57051 7.83867 8.16510 8.31532 9.08197 10.40015 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028282 B = 0.008012 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.781252 B = 3494.062560 C = 4050.095812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.131 3.869 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -1.013 5.013 8 H 0.123 0.877 9 S 2.717 3.283 10 O -1.017 7.017 11 O -1.010 7.010 12 N -1.111 6.111 13 C 0.170 3.830 14 H 0.089 0.911 15 C 0.053 3.947 16 N -0.838 5.838 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.137 4.137 22 H 0.287 0.713 23 H 0.398 0.602 24 H 0.071 0.929 25 H 0.025 0.975 26 H 0.346 0.654 27 H 0.333 0.667 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 -9.583 3.617 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.086 4.086 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.192 1.192 7 C -1.147 5.147 8 H 0.140 0.860 9 S 2.817 3.183 10 O -1.007 7.007 11 O -1.000 7.000 12 N -0.864 5.864 13 C 0.061 3.939 14 H 0.107 0.893 15 C -0.080 4.080 16 N -0.369 5.369 17 C -0.119 4.119 18 C -0.156 4.156 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.175 4.175 22 H 0.098 0.902 23 H 0.229 0.771 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.161 0.839 27 H 0.145 0.855 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.538 -9.722 3.318 12.742 hybrid contribution 1.878 1.123 0.351 2.217 sum 9.416 -8.599 3.669 13.269 Atomic orbital electron populations 1.69918 1.06806 1.30365 1.41261 1.24761 0.94309 1.00647 0.88845 0.86272 0.79860 0.80220 0.79456 1.19021 1.20574 1.19194 1.30804 1.07368 1.11178 1.65325 0.85954 1.00245 0.72021 0.73445 0.72566 1.93355 1.75064 1.87767 1.44535 1.93318 1.71774 1.87479 1.47443 1.55717 1.55272 1.49012 1.26387 1.20571 0.89014 0.96646 0.87708 0.89307 1.22185 0.96366 0.92889 0.96571 1.58593 1.37054 1.03785 1.37438 1.22094 0.97429 0.94833 0.97574 1.22431 0.98013 0.95355 0.99794 1.22496 0.95940 0.97283 1.00447 1.22329 0.97003 0.96443 1.00287 1.22416 0.95542 1.00658 0.98880 0.90247 0.77059 0.91096 0.95727 0.83921 0.85523 0.91032 0.91090 0.92299 0.92092 0.92142 0.92352 0.91727 0.92603 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.40 13.19 55.43 0.73 -24.67 16 2 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 3 Si 0.92 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -1.01 -27.30 9.70 30.60 0.30 -27.00 16 8 H 0.12 2.93 4.81 -52.49 -0.25 2.68 16 9 S 2.72 71.55 4.85 -107.50 -0.52 71.03 16 10 O -1.02 -30.53 18.02 -57.17 -1.03 -31.56 16 11 O -1.01 -28.75 15.35 -57.17 -0.88 -29.62 16 12 N -1.11 -21.64 4.36 -4.89 -0.02 -21.66 16 13 C 0.17 2.79 2.14 -67.93 -0.15 2.65 16 14 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 15 C 0.05 0.71 6.30 -3.83 -0.02 0.69 16 16 N -0.84 -12.45 7.99 -10.37 -0.08 -12.53 16 17 C -0.10 -1.39 2.82 -89.50 -0.25 -1.64 16 18 C -0.12 -1.45 5.14 -25.03 -0.13 -1.58 16 19 C -0.12 -1.48 6.91 -24.70 -0.17 -1.65 16 20 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 21 C -0.14 -2.21 6.19 -25.61 -0.16 -2.37 16 22 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 23 H 0.40 7.07 7.25 -34.47 -0.25 6.82 16 24 H 0.07 0.88 7.12 -51.93 -0.37 0.51 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.35 5.32 7.75 -39.29 -0.30 5.01 16 27 H 0.33 4.02 9.08 -39.29 -0.36 3.67 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.92 6.01 -51.93 -0.31 0.60 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 2.01 4.88 -51.93 -0.25 1.76 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -34.48 294.14 -8.26 -42.74 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: -0.85 Total: -29.30 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.63 Total: -58.86 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -1.91 Total: -61.18 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 71.55 SS G_CDS: -0.52 Total: 71.03 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.48 -8.26 -42.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236284249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.418 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds