Wall clock time and date at job start Mon Mar 30 2020 04:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00452 * 2 1 4 4 H 1.48494 * 109.47483 * 240.00238 * 3 2 1 5 5 H 1.48500 * 109.46869 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46826 * 119.99737 * 3 2 1 7 7 C 1.37884 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00091 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99613 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40442 * 68.46632 * 9 7 2 11 11 O 1.42103 * 106.40462 * 295.54624 * 9 7 2 12 12 N 1.65604 * 107.21789 * 182.00447 * 9 7 2 13 13 C 1.46499 * 119.99939 * 63.73235 * 12 9 7 14 14 H 1.09002 * 109.47044 * 0.03003 * 13 12 9 15 15 C 1.53000 * 109.46940 * 240.03054 * 13 12 9 16 16 N 1.46895 * 109.47234 * 56.49078 * 15 13 12 17 17 C 1.52994 * 109.46884 * 120.02767 * 13 12 9 18 18 C 1.54269 * 110.03337 * 57.91192 * 17 13 12 19 19 C 1.54967 * 104.16052 * 217.13615 * 18 17 13 20 20 C 1.54886 * 102.77834 * 37.88256 * 19 18 17 21 21 C 1.53876 * 110.03780 * 300.69070 * 17 13 12 22 22 H 0.97005 * 119.99886 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99670 * 243.73019 * 12 9 7 24 24 H 1.08996 * 109.46788 * 296.48535 * 15 13 12 25 25 H 1.09001 * 109.46873 * 176.48976 * 15 13 12 26 26 H 1.00896 * 111.00219 * 66.57437 * 16 15 13 27 27 H 1.00900 * 110.99519 * 190.53307 * 16 15 13 28 28 H 1.08999 * 110.01791 * 179.29978 * 17 13 12 29 29 H 1.08997 * 110.48486 * 335.77649 * 18 17 13 30 30 H 1.09000 * 110.49019 * 98.42182 * 18 17 13 31 31 H 1.09002 * 110.71620 * 279.57115 * 19 18 17 32 32 H 1.08992 * 110.92640 * 156.29224 * 19 18 17 33 33 H 1.09004 * 110.48913 * 203.40858 * 20 19 18 34 34 H 1.09002 * 110.59989 * 80.82306 * 20 19 18 35 35 H 1.08999 * 110.03489 * 238.57197 * 21 17 13 36 36 H 1.09001 * 110.02478 * 359.95369 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1234 -2.7200 -0.0005 10 8 0.4889 -2.8170 -1.2684 11 8 0.4141 -2.7738 1.2296 12 7 2.2473 -3.9350 0.0541 13 6 3.1225 -4.0714 1.2210 14 1 2.8882 -3.2901 1.9441 15 6 4.5822 -3.9390 0.7820 16 7 4.7710 -2.6571 0.0901 17 6 2.9055 -5.4427 1.8637 18 6 3.1831 -6.5583 0.8349 19 6 2.1214 -7.6411 1.1542 20 6 0.8712 -6.8000 1.5125 21 6 1.4363 -5.5965 2.2947 22 1 -0.4850 0.8401 0.0004 23 1 2.3261 -4.5564 -0.6866 24 1 4.8341 -4.7569 0.1070 25 1 5.2299 -3.9781 1.6578 26 1 4.6478 -1.8822 0.7244 27 1 5.6743 -2.6177 -0.3578 28 1 3.5617 -5.5586 2.7262 29 1 3.0514 -6.1828 -0.1798 30 1 4.1885 -6.9579 0.9674 31 1 2.4341 -8.2493 2.0030 32 1 1.9292 -8.2668 0.2826 33 1 0.1903 -7.3763 2.1389 34 1 0.3636 -6.4632 0.6085 35 1 1.3797 -5.7877 3.3663 36 1 0.8782 -4.6937 2.0468 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236284249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:31 Heat of formation + Delta-G solvation = -136.096356 kcal Electronic energy + Delta-G solvation = -19435.797070 eV Core-core repulsion = 16465.144285 eV Total energy + Delta-G solvation = -2970.652785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97218 -37.22192 -36.35129 -35.98013 -35.06457 -33.42912 -30.35148 -29.48411 -28.06222 -26.51347 -22.90542 -21.41140 -20.82235 -20.32012 -19.11673 -18.11968 -17.20468 -16.95190 -16.63882 -16.31629 -15.84238 -15.50065 -14.99111 -14.69738 -14.48328 -14.09244 -13.91639 -13.82880 -13.04710 -12.91359 -12.51634 -12.47348 -12.32902 -12.25404 -12.19887 -11.87347 -11.75605 -11.72885 -11.37533 -11.33188 -11.27293 -11.11515 -10.75689 -9.97935 -9.26027 -8.61138 -7.27412 0.57917 1.38611 1.41578 1.52868 2.29043 2.71508 3.17761 3.63217 3.78528 3.87228 3.93986 4.10285 4.26716 4.42545 4.56389 4.63031 4.70264 4.75440 4.81061 4.88473 4.91381 4.96471 5.03665 5.15378 5.22524 5.33137 5.35731 5.46371 5.55990 5.58709 5.77188 6.24945 6.45913 6.63937 6.82198 6.96912 8.34455 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028282 B = 0.008012 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.781252 B = 3494.062560 C = 4050.095812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.065 3.935 3 Si 0.988 3.012 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.245 1.245 7 C -1.026 5.026 8 H 0.149 0.851 9 S 2.718 3.282 10 O -1.065 7.065 11 O -1.043 7.043 12 N -1.094 6.094 13 C 0.161 3.839 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.860 5.860 17 C -0.093 4.093 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.129 4.129 21 C -0.148 4.148 22 H 0.292 0.708 23 H 0.407 0.593 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.341 0.659 27 H 0.350 0.650 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.546 -10.344 4.130 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.169 1.169 7 C -1.160 5.160 8 H 0.166 0.834 9 S 2.820 3.180 10 O -1.055 7.055 11 O -1.032 7.032 12 N -0.852 5.852 13 C 0.052 3.948 14 H 0.081 0.919 15 C -0.073 4.073 16 N -0.392 5.392 17 C -0.114 4.114 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.167 4.167 21 C -0.185 4.185 22 H 0.102 0.898 23 H 0.241 0.759 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.155 0.845 27 H 0.164 0.836 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.786 -10.520 3.826 15.545 hybrid contribution 0.853 1.269 0.234 1.547 sum 11.639 -9.250 4.060 15.412 Atomic orbital electron populations 1.70047 1.09008 1.31746 1.43138 1.26042 0.95155 1.05420 0.87957 0.85190 0.78649 0.74716 0.80687 1.17728 1.19993 1.16872 1.31200 1.08855 1.11436 1.64526 0.83351 0.99808 0.72686 0.74412 0.71125 1.93279 1.77082 1.88704 1.46426 1.93278 1.73439 1.88223 1.48299 1.55049 1.54808 1.47379 1.27928 1.20898 0.90313 0.97502 0.86055 0.91867 1.22149 0.94145 0.92881 0.98130 1.58538 1.38565 1.04200 1.37929 1.22099 0.96356 0.93943 0.98996 1.22452 0.99821 0.94597 0.98459 1.22482 0.94055 0.97037 1.01732 1.22363 0.98565 0.96534 0.99193 1.22450 0.96843 0.99288 0.99956 0.89801 0.75856 0.89247 0.92720 0.84501 0.83625 0.88128 0.92078 0.89131 0.90000 0.91053 0.91331 0.94230 0.91477 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.73 13.19 21.45 0.28 -55.45 16 2 C 0.07 3.66 5.46 84.66 0.46 4.13 16 3 Si 0.99 41.74 29.54 68.60 2.03 43.76 16 4 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -1.03 -55.91 9.70 67.74 0.66 -55.25 16 8 H 0.15 7.01 4.81 -2.91 -0.01 7.00 16 9 S 2.72 148.58 4.85 -56.49 -0.27 148.31 16 10 O -1.06 -66.83 18.02 -128.00 -2.31 -69.14 16 11 O -1.04 -62.56 15.35 -128.00 -1.97 -64.53 16 12 N -1.09 -42.93 4.36 -169.40 -0.74 -43.67 16 13 C 0.16 5.08 2.14 44.99 0.10 5.18 16 14 H 0.06 2.32 7.70 -2.39 -0.02 2.31 16 15 C 0.06 1.41 6.30 86.30 0.54 1.96 16 16 N -0.86 -23.48 7.99 -186.73 -1.49 -24.98 16 17 C -0.09 -2.42 2.82 -10.07 -0.03 -2.45 16 18 C -0.12 -2.45 5.14 31.70 0.16 -2.28 16 19 C -0.12 -2.42 6.91 31.91 0.22 -2.20 16 20 C -0.13 -3.65 6.83 31.67 0.22 -3.43 16 21 C -0.15 -4.73 6.19 31.32 0.19 -4.54 16 22 H 0.29 16.35 8.31 -92.70 -0.77 15.58 16 23 H 0.41 14.49 7.25 -96.75 -0.70 13.79 16 24 H 0.09 1.83 7.12 -2.39 -0.02 1.82 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.34 9.80 7.75 -89.70 -0.69 9.10 16 27 H 0.35 7.41 9.08 -89.69 -0.81 6.60 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.42 6.01 -2.39 -0.01 1.40 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 2.27 4.88 -2.39 -0.01 2.25 16 Total: -1.00 -78.30 294.14 -3.03 -81.33 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -1.09 Total: 43.24 kcal Atomic # 6 Polarization: -61.41 SS G_CDS: 2.52 Total: -58.88 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -1.95 Total: -124.09 kcal Atomic # 8 Polarization: -129.39 SS G_CDS: -4.27 Total: -133.67 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 148.58 SS G_CDS: -0.27 Total: 148.31 kcal Total: -78.30 -3.03 -81.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236284249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.766 kcal (2) G-P(sol) polarization free energy of solvation -78.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds