Wall clock time and date at job start Mon Mar 30 2020 04:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47418 * 270.00111 * 3 2 1 5 5 H 1.48498 * 109.47238 * 30.00362 * 3 2 1 6 6 H 1.48505 * 109.47348 * 149.99856 * 3 2 1 7 7 C 1.37882 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99928 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47461 * 300.00276 * 9 7 2 11 11 O 1.42903 * 109.47147 * 60.00026 * 9 7 2 12 12 C 1.53002 * 109.47186 * 180.02562 * 9 7 2 13 13 C 1.50701 * 109.46874 * 175.00299 * 12 9 7 14 14 N 1.30972 * 126.44550 * 90.00214 * 13 12 9 15 15 C 1.35201 * 105.58268 * 179.97438 * 14 13 12 16 16 C 1.48464 * 126.41136 * 179.97438 * 15 14 13 17 17 C 1.39415 * 120.10046 * 180.02562 * 16 15 14 18 18 N 1.32015 * 119.87563 * 179.70441 * 17 16 15 19 19 C 1.32192 * 120.08196 * 0.55538 * 18 17 16 20 20 C 1.38485 * 120.20056 * 359.44213 * 19 18 17 21 21 N 1.31978 * 120.12125 * 0.28049 * 20 19 18 22 22 N 1.30729 * 107.17932 * 0.22372 * 15 14 13 23 23 O 1.21294 * 110.10053 * 359.61047 * 22 15 14 24 24 H 0.96999 * 119.99812 * 359.97438 * 1 2 3 25 25 H 0.96704 * 113.99507 * 60.00057 * 11 9 7 26 26 H 1.09001 * 109.47124 * 54.99968 * 12 9 7 27 27 H 1.09002 * 109.46965 * 295.00185 * 12 9 7 28 28 H 1.07998 * 120.06110 * 0.02562 * 17 16 15 29 29 H 1.08002 * 119.90180 * 179.72679 * 19 18 17 30 30 H 1.08001 * 119.93664 * 180.30249 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4289 -2.5746 -1.1670 12 6 2.2451 -3.6621 -0.0005 13 6 1.4956 -4.9637 0.1232 14 7 1.0389 -5.6953 -0.8624 15 6 0.4429 -6.7594 -0.2790 16 6 -0.2317 -7.8834 -0.9760 17 6 -0.8063 -8.9186 -0.2399 18 7 -1.4101 -9.9129 -0.8641 19 6 -1.4604 -9.9329 -2.1849 20 6 -0.8908 -8.9064 -2.9194 21 7 -0.2899 -7.9056 -2.3035 22 7 0.5671 -6.6107 1.0138 23 8 1.1723 -5.5888 1.2597 24 1 -0.4850 0.8400 0.0004 25 1 0.9208 -2.5291 -1.9984 26 1 2.9292 -3.5553 0.8413 27 1 2.8113 -3.6561 -0.9319 28 1 -0.7620 -8.9044 0.8391 29 1 -1.9513 -10.7500 -2.6926 30 1 -0.9387 -8.9246 -3.9982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236553557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:33 Heat of formation + Delta-G solvation = 68.543335 kcal Electronic energy + Delta-G solvation = -18502.048630 eV Core-core repulsion = 15301.285393 eV Total energy + Delta-G solvation = -3200.763236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.085 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.24624 -41.21559 -36.40453 -35.68139 -34.38721 -33.25162 -32.21355 -31.40649 -29.42531 -25.95405 -25.80832 -24.77639 -23.17118 -22.09451 -20.74166 -18.04288 -17.81932 -17.55573 -17.15227 -16.71716 -16.18338 -15.04559 -14.71823 -14.58496 -14.36827 -14.31802 -13.40000 -13.14852 -12.87740 -12.30918 -12.02058 -11.84176 -11.40476 -11.25921 -11.14504 -10.95964 -10.83607 -10.69883 -10.29693 -10.10534 -9.39167 -9.35810 -9.08113 -8.69234 -8.29923 -6.11270 -4.31996 0.17217 0.81264 1.57097 2.56646 3.08395 3.23690 3.23883 3.31620 3.33521 3.56116 3.80737 3.95217 4.23827 4.31789 4.53047 4.83336 4.98221 5.16582 5.20244 5.26456 5.72512 5.87738 5.98033 6.04089 6.22862 6.27255 6.54054 6.96507 7.45439 7.48360 7.70928 7.97256 8.38547 8.69937 9.27690 9.45890 10.93063 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.004025 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.927137 B = 6955.018288 C = 7238.998743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.577 4.577 8 H 0.062 0.938 9 C 0.236 3.764 10 H 0.062 0.938 11 O -0.559 6.559 12 C -0.063 4.063 13 C 0.221 3.779 14 N -0.453 5.453 15 C 0.203 3.797 16 C 0.163 3.837 17 C 0.085 3.915 18 N -0.435 5.435 19 C 0.054 3.946 20 C 0.058 3.942 21 N -0.399 5.399 22 N -0.376 5.376 23 O 0.081 5.919 24 H 0.263 0.737 25 H 0.351 0.649 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.177 0.823 29 H 0.176 0.824 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 -15.721 -2.939 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.614 4.614 8 H 0.081 0.919 9 C 0.177 3.823 10 H 0.080 0.920 11 O -0.362 6.362 12 C -0.103 4.103 13 C 0.001 3.999 14 N -0.185 5.185 15 C -0.068 4.068 16 C 0.023 3.977 17 C -0.076 4.076 18 N -0.149 5.149 19 C -0.107 4.107 20 C -0.104 4.104 21 N -0.115 5.115 22 N -0.084 5.084 23 O 0.019 5.981 24 H 0.073 0.927 25 H 0.195 0.805 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.195 0.805 29 H 0.193 0.807 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.420 -16.330 -2.315 16.498 hybrid contribution 0.920 1.149 -0.408 1.527 sum 0.500 -15.181 -2.723 15.431 Atomic orbital electron populations 1.70076 1.06063 1.26811 1.46112 1.25035 0.94717 0.99334 0.93529 0.86580 0.79888 0.83073 0.78299 1.20431 1.21095 1.19646 1.21509 0.93308 0.90670 1.55948 0.91934 1.19432 0.87594 0.88147 0.87125 0.92012 1.86606 1.38115 1.96092 1.15338 1.21644 0.98859 0.84763 1.04986 1.29453 0.94579 0.97268 0.78574 1.72148 1.14105 1.02913 1.29309 1.23096 1.01340 0.95536 0.86859 1.18903 0.96792 0.91818 0.90188 1.23719 0.92683 0.89073 1.02170 1.68557 1.12838 1.23210 1.10274 1.23995 0.96783 0.99154 0.90724 1.23908 0.94194 0.89919 1.02384 1.68345 1.11517 1.23258 1.08396 1.74767 1.14326 1.02945 1.16390 1.85265 1.51945 1.25175 1.35704 0.92737 0.80507 0.87991 0.87798 0.80548 0.80698 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.48 12.84 55.43 0.71 -23.76 16 2 C 0.08 2.15 5.40 -17.82 -0.10 2.06 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.58 -14.60 8.76 -34.44 -0.30 -14.90 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.24 5.56 2.81 -27.88 -0.08 5.48 16 10 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 11 O -0.56 -14.01 12.48 -35.23 -0.44 -14.45 16 12 C -0.06 -1.15 5.46 -27.88 -0.15 -1.30 16 13 C 0.22 4.14 7.52 -12.99 -0.10 4.04 16 14 N -0.45 -8.94 11.57 -9.89 -0.11 -9.06 16 15 C 0.20 3.70 7.92 -156.14 -1.24 2.46 16 16 C 0.16 2.57 6.76 -82.76 -0.56 2.01 16 17 C 0.08 1.12 10.88 -17.03 -0.19 0.94 16 18 N -0.43 -5.18 10.49 -12.78 -0.13 -5.31 16 19 C 0.05 0.50 11.22 -17.31 -0.19 0.30 16 20 C 0.06 0.59 11.22 -17.40 -0.20 0.40 16 21 N -0.40 -6.01 10.44 -9.57 -0.10 -6.11 16 22 N -0.38 -6.70 11.86 30.96 0.37 -6.33 16 23 O 0.08 1.47 11.29 18.04 0.20 1.68 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.35 7.82 9.04 45.56 0.41 8.23 16 26 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.18 2.09 7.87 -52.49 -0.41 1.68 16 29 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 283.28 15.07 4.27 4.27 Total: -1.00 -32.24 283.28 -5.01 -37.25 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -1.66 Total: 5.19 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -3.10 Total: 1.49 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.73 Total: -50.57 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.24 Total: -12.77 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.24 -5.01 -37.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236553557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.795 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds