Wall clock time and date at job start Mon Mar 30 2020 04:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47418 * 270.00111 * 3 2 1 5 5 H 1.48498 * 109.47238 * 30.00362 * 3 2 1 6 6 H 1.48505 * 109.47348 * 149.99856 * 3 2 1 7 7 C 1.37882 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99928 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47461 * 300.00276 * 9 7 2 11 11 O 1.42903 * 109.47147 * 60.00026 * 9 7 2 12 12 C 1.53002 * 109.47186 * 180.02562 * 9 7 2 13 13 C 1.50701 * 109.46874 * 175.00299 * 12 9 7 14 14 N 1.30972 * 126.44550 * 90.00214 * 13 12 9 15 15 C 1.35201 * 105.58268 * 179.97438 * 14 13 12 16 16 C 1.48464 * 126.41136 * 179.97438 * 15 14 13 17 17 C 1.39415 * 120.10046 * 180.02562 * 16 15 14 18 18 N 1.32015 * 119.87563 * 179.70441 * 17 16 15 19 19 C 1.32192 * 120.08196 * 0.55538 * 18 17 16 20 20 C 1.38485 * 120.20056 * 359.44213 * 19 18 17 21 21 N 1.31978 * 120.12125 * 0.28049 * 20 19 18 22 22 N 1.30729 * 107.17932 * 0.22372 * 15 14 13 23 23 O 1.21294 * 110.10053 * 359.61047 * 22 15 14 24 24 H 0.96999 * 119.99812 * 359.97438 * 1 2 3 25 25 H 0.96704 * 113.99507 * 60.00057 * 11 9 7 26 26 H 1.09001 * 109.47124 * 54.99968 * 12 9 7 27 27 H 1.09002 * 109.46965 * 295.00185 * 12 9 7 28 28 H 1.07998 * 120.06110 * 0.02562 * 17 16 15 29 29 H 1.08002 * 119.90180 * 179.72679 * 19 18 17 30 30 H 1.08001 * 119.93664 * 180.30249 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4289 -2.5746 -1.1670 12 6 2.2451 -3.6621 -0.0005 13 6 1.4956 -4.9637 0.1232 14 7 1.0389 -5.6953 -0.8624 15 6 0.4429 -6.7594 -0.2790 16 6 -0.2317 -7.8834 -0.9760 17 6 -0.8063 -8.9186 -0.2399 18 7 -1.4101 -9.9129 -0.8641 19 6 -1.4604 -9.9329 -2.1849 20 6 -0.8908 -8.9064 -2.9194 21 7 -0.2899 -7.9056 -2.3035 22 7 0.5671 -6.6107 1.0138 23 8 1.1723 -5.5888 1.2597 24 1 -0.4850 0.8400 0.0004 25 1 0.9208 -2.5291 -1.9984 26 1 2.9292 -3.5553 0.8413 27 1 2.8113 -3.6561 -0.9319 28 1 -0.7620 -8.9044 0.8391 29 1 -1.9513 -10.7500 -2.6926 30 1 -0.9387 -8.9246 -3.9982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236553557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:32 Heat of formation + Delta-G solvation = 41.295411 kcal Electronic energy + Delta-G solvation = -18503.230189 eV Core-core repulsion = 15301.285393 eV Total energy + Delta-G solvation = -3201.944795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.085 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.64886 -42.13829 -38.20404 -37.05194 -35.40500 -34.66219 -34.21779 -32.53777 -31.02545 -27.74334 -26.94445 -25.77952 -24.52844 -23.66224 -22.26453 -19.49818 -19.19710 -18.88891 -18.33779 -17.85061 -17.35809 -16.64460 -16.38197 -16.05110 -15.99094 -15.36205 -14.95035 -14.63402 -14.15456 -13.69668 -13.32647 -13.19637 -12.85991 -12.79055 -12.77950 -12.52508 -12.39561 -12.16456 -12.01412 -11.65442 -11.02398 -10.70681 -10.35711 -10.30976 -10.12321 -8.12409 -6.38685 -0.83694 -0.10592 0.20524 1.24660 1.47555 1.48330 1.58794 1.72873 2.04187 2.43246 2.60542 2.63839 3.11679 3.16015 3.26441 3.51371 3.81634 4.05511 4.13079 4.26513 4.37620 4.42187 4.47171 4.55799 4.82641 4.99775 5.20589 5.56846 5.71007 6.00712 6.06998 6.55183 6.72872 6.97526 7.34962 7.52737 8.92884 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.004025 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.927137 B = 6955.018288 C = 7238.998743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.234 3.766 10 H 0.026 0.974 11 O -0.580 6.580 12 C -0.047 4.047 13 C 0.216 3.784 14 N -0.475 5.475 15 C 0.202 3.798 16 C 0.123 3.877 17 C 0.087 3.913 18 N -0.449 5.449 19 C 0.081 3.919 20 C 0.063 3.937 21 N -0.436 5.436 22 N -0.381 5.381 23 O 0.075 5.925 24 H 0.260 0.740 25 H 0.360 0.640 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.180 0.820 29 H 0.228 0.772 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -17.079 -4.139 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.181 1.181 7 C -0.617 4.617 8 H 0.098 0.902 9 C 0.175 3.825 10 H 0.043 0.957 11 O -0.384 6.384 12 C -0.086 4.086 13 C -0.003 4.003 14 N -0.207 5.207 15 C -0.070 4.070 16 C -0.015 4.015 17 C -0.073 4.073 18 N -0.163 5.163 19 C -0.082 4.082 20 C -0.100 4.100 21 N -0.153 5.153 22 N -0.090 5.090 23 O 0.016 5.984 24 H 0.069 0.931 25 H 0.206 0.794 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.197 0.803 29 H 0.244 0.756 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.277 -17.672 -3.464 18.011 hybrid contribution 0.613 1.374 -0.169 1.514 sum 0.890 -16.298 -3.633 16.722 Atomic orbital electron populations 1.70236 1.07987 1.27471 1.48358 1.25937 0.95370 1.03193 0.93303 0.85482 0.78848 0.78458 0.78315 1.20056 1.21627 1.18089 1.21968 0.94220 0.91291 1.54229 0.90245 1.19264 0.87704 0.90055 0.85455 0.95655 1.86555 1.39337 1.96319 1.16228 1.21392 0.97602 0.82470 1.07100 1.29466 0.94634 0.97467 0.78755 1.72125 1.14807 1.03770 1.30040 1.23641 1.00653 0.95772 0.86932 1.18873 0.99328 0.92297 0.90961 1.23706 0.92391 0.88801 1.02373 1.68670 1.13121 1.22655 1.11846 1.24871 0.94179 0.99414 0.89687 1.24689 0.92418 0.88652 1.04246 1.68257 1.13122 1.25598 1.08317 1.74731 1.14797 1.02974 1.16519 1.85241 1.52194 1.25429 1.35573 0.93067 0.79402 0.85389 0.86064 0.80265 0.75608 0.76395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.85 12.84 21.45 0.28 -52.57 16 2 C 0.02 1.30 5.40 84.66 0.46 1.76 16 3 Si 0.96 41.21 29.54 68.60 2.03 43.24 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.58 -29.09 8.76 25.60 0.22 -28.87 16 8 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.23 11.18 2.81 29.85 0.08 11.27 16 10 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 11 O -0.58 -29.72 12.48 -148.98 -1.86 -31.58 16 12 C -0.05 -1.67 5.46 29.85 0.16 -1.51 16 13 C 0.22 8.21 7.52 88.36 0.66 8.88 16 14 N -0.47 -19.04 11.57 -302.58 -3.50 -22.54 16 15 C 0.20 7.50 7.92 137.32 1.09 8.59 16 16 C 0.12 3.89 6.76 42.00 0.28 4.18 16 17 C 0.09 2.25 10.88 84.95 0.92 3.18 16 18 N -0.45 -9.70 10.49 -194.34 -2.04 -11.74 16 19 C 0.08 1.16 11.22 84.70 0.95 2.11 16 20 C 0.06 1.10 11.22 84.73 0.95 2.05 16 21 N -0.44 -12.73 10.44 -184.20 -1.92 -14.66 16 22 N -0.38 -13.90 11.86 -59.20 -0.70 -14.60 16 23 O 0.08 2.80 11.29 74.61 0.84 3.64 16 24 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 25 H 0.36 16.31 9.04 -74.05 -0.67 15.64 16 26 H 0.13 3.89 8.14 -2.39 -0.02 3.87 16 27 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 28 H 0.18 4.31 7.87 -2.91 -0.02 4.29 16 29 H 0.23 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.22 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -71.79 283.28 -0.56 -72.35 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.53 Total: 16.84 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.79 Total: 11.63 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -7.89 Total: -116.12 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.02 Total: -27.94 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -71.79 -0.56 -72.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236553557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.643 kcal (2) G-P(sol) polarization free energy of solvation -71.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds