Wall clock time and date at job start Mon Mar 30 2020 04:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 O 1.42898 * 109.47228 * 60.00083 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 C 1.50695 * 109.47125 * 175.00037 * 12 9 7 14 14 N 1.30969 * 126.44822 * 90.00131 * 13 12 9 15 15 C 1.35193 * 105.57958 * 179.97438 * 14 13 12 16 16 C 1.48551 * 126.40544 * 180.02562 * 15 14 13 17 17 N 1.32512 * 119.20388 * 359.73224 * 16 15 14 18 18 C 1.32184 * 120.75058 * 179.75519 * 17 16 15 19 19 C 1.38713 * 119.18123 * 0.50997 * 18 17 16 20 20 C 1.38700 * 118.54018 * 359.74855 * 19 18 17 21 21 N 1.32185 * 119.18287 * 359.97438 * 20 19 18 22 22 N 1.30681 * 107.18776 * 0.02562 * 15 14 13 23 23 O 1.21285 * 110.11330 * 359.70161 * 22 15 14 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 0.96698 * 113.99738 * 60.00140 * 11 9 7 26 26 H 1.09006 * 109.47088 * 295.00120 * 12 9 7 27 27 H 1.09001 * 109.46771 * 54.99545 * 12 9 7 28 28 H 1.07993 * 120.40909 * 180.25890 * 18 17 16 29 29 H 1.08003 * 120.72623 * 179.76676 * 19 18 17 30 30 H 1.07998 * 120.41354 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0018 13 6 1.4959 -4.9635 0.1256 14 7 1.0400 -5.6957 -0.8599 15 6 0.4438 -6.7595 -0.2764 16 6 -0.2296 -7.8851 -0.9738 17 7 -0.2802 -7.8877 -2.2979 18 6 -0.8675 -8.8762 -2.9499 19 6 -1.4436 -9.9128 -2.2304 20 6 -1.3768 -9.8755 -0.8455 21 7 -0.7694 -8.8598 -0.2567 22 7 0.5707 -6.6125 1.0159 23 8 1.1762 -5.5908 1.2620 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9225 -2.5300 -1.9975 26 1 2.8124 -3.6564 -0.9292 27 1 2.9289 -3.5547 0.8441 28 1 -0.9019 -8.8748 -4.0293 29 1 -1.9332 -10.7311 -2.7375 30 1 -1.8156 -10.6665 -0.2555 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236553630.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:42 Heat of formation + Delta-G solvation = 66.576265 kcal Electronic energy + Delta-G solvation = -18556.337661 eV Core-core repulsion = 15355.489126 eV Total energy + Delta-G solvation = -3200.848535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.085 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.29149 -41.20111 -36.66240 -35.59246 -34.09649 -33.31023 -32.18636 -31.86059 -29.46195 -25.90197 -25.44510 -24.74791 -23.19126 -22.16174 -20.97827 -18.23713 -17.90515 -17.61577 -17.28329 -16.61142 -15.75098 -15.22102 -15.11902 -14.48487 -14.37122 -13.85615 -13.79660 -13.40167 -12.83980 -12.48383 -11.79230 -11.73374 -11.26692 -11.19388 -11.17700 -10.79907 -10.73902 -10.50723 -10.15821 -10.12405 -9.61975 -9.51034 -9.21538 -8.54729 -8.18334 -6.43167 -4.29421 0.21721 0.80796 1.54404 2.48540 2.88898 3.18054 3.40883 3.41470 3.59877 3.60834 3.62938 4.25258 4.39902 4.47973 4.56589 4.73636 4.75125 5.19983 5.26934 5.44411 5.64192 5.82524 5.88886 5.94591 6.05997 6.22852 6.41610 6.67610 7.24815 7.71427 7.81199 8.24327 8.39138 8.75968 9.02141 9.57315 10.96900 Molecular weight = 262.09amu Principal moments of inertia in cm(-1) A = 0.044875 B = 0.004063 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.799792 B = 6889.570399 C = 7176.257507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.653 4.653 8 H 0.056 0.944 9 C 0.219 3.781 10 H 0.056 0.944 11 O -0.576 6.576 12 C -0.053 4.053 13 C 0.212 3.788 14 N -0.447 5.447 15 C 0.208 3.792 16 C 0.408 3.592 17 N -0.476 5.476 18 C 0.151 3.849 19 C -0.223 4.223 20 C 0.150 3.850 21 N -0.492 5.492 22 N -0.347 5.347 23 O 0.084 5.916 24 H 0.285 0.715 25 H 0.359 0.641 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.177 0.823 29 H 0.154 0.846 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -17.754 -3.918 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.173 4.173 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.690 4.690 8 H 0.074 0.926 9 C 0.161 3.839 10 H 0.073 0.927 11 O -0.381 6.381 12 C -0.093 4.093 13 C -0.007 4.007 14 N -0.179 5.179 15 C -0.064 4.064 16 C 0.140 3.860 17 N -0.191 5.191 18 C -0.015 4.015 19 C -0.245 4.245 20 C -0.016 4.016 21 N -0.208 5.208 22 N -0.053 5.053 23 O 0.019 5.981 24 H 0.097 0.903 25 H 0.205 0.795 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.194 0.806 29 H 0.172 0.828 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.555 -16.119 -2.854 16.379 hybrid contribution 0.248 -2.356 -0.803 2.501 sum -0.307 -18.475 -3.657 18.836 Atomic orbital electron populations 1.70642 1.07003 1.32392 1.42042 1.25826 0.96425 1.02558 0.92484 0.83559 0.74917 0.75225 0.76612 1.20751 1.21290 1.21292 1.22315 0.94542 0.91720 1.60458 0.92561 1.19591 0.88115 0.89842 0.86396 0.92674 1.86515 1.39112 1.96312 1.16115 1.21449 0.98482 0.84195 1.05171 1.29453 0.95123 0.97469 0.78704 1.72106 1.13896 1.02675 1.29252 1.22516 1.02202 0.95081 0.86602 1.18976 0.91975 0.89262 0.85749 1.68312 1.16071 1.25993 1.08723 1.23381 0.89232 0.87479 1.01432 1.23096 1.02804 1.01930 0.96719 1.23288 0.91453 0.94303 0.92602 1.68245 1.09240 1.01986 1.41301 1.74934 1.12168 1.01660 1.16511 1.85328 1.51782 1.25227 1.35754 0.90349 0.79498 0.87664 0.87866 0.80554 0.82812 0.80683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.53 55.43 0.75 -25.69 16 2 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 3 Si 1.07 23.93 29.90 -169.99 -5.08 18.85 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.65 -16.95 8.76 -34.44 -0.30 -17.25 16 8 H 0.06 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.22 5.21 2.41 -27.88 -0.07 5.14 16 10 H 0.06 1.43 8.01 -51.93 -0.42 1.02 16 11 O -0.58 -14.25 11.77 -35.23 -0.41 -14.67 16 12 C -0.05 -1.01 5.46 -27.88 -0.15 -1.16 16 13 C 0.21 4.13 7.52 -13.00 -0.10 4.03 16 14 N -0.45 -9.13 11.55 -9.90 -0.11 -9.24 16 15 C 0.21 4.11 7.99 -156.15 -1.25 2.86 16 16 C 0.41 7.06 7.60 -156.99 -1.19 5.87 16 17 N -0.48 -7.43 10.34 -11.10 -0.11 -7.55 16 18 C 0.15 1.54 11.30 -17.22 -0.19 1.35 16 19 C -0.22 -1.72 10.17 -39.24 -0.40 -2.12 16 20 C 0.15 1.47 11.30 -17.23 -0.19 1.28 16 21 N -0.49 -7.43 10.33 -11.11 -0.11 -7.55 16 22 N -0.35 -6.88 12.16 30.95 0.38 -6.51 16 23 O 0.08 1.63 11.29 18.02 0.20 1.83 16 24 H 0.28 8.70 6.47 -40.82 -0.26 8.43 16 25 H 0.36 7.98 9.04 45.56 0.41 8.39 16 26 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 27 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.15 0.54 8.06 -52.48 -0.42 0.11 16 30 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 281.84 15.07 4.25 4.25 Total: -1.00 -34.07 281.84 -5.79 -39.87 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -1.58 Total: 5.50 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -3.94 Total: 0.91 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.78 Total: -56.54 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.21 Total: -12.84 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.08 Total: 18.85 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.07 -5.79 -39.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236553630.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.443 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds